Wall clock time and date at job start Fri Apr 10 2020 18:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99717 * 2 1 4 4 H 1.48496 * 109.47105 * 269.99737 * 3 2 1 5 5 H 1.48504 * 109.47081 * 30.00170 * 3 2 1 6 6 H 1.48501 * 109.46752 * 149.99811 * 3 2 1 7 7 C 1.37880 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99944 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00052 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47133 * 305.47815 * 9 7 2 11 11 O 1.42905 * 109.47218 * 65.47704 * 9 7 2 12 12 C 1.52999 * 109.47257 * 185.47940 * 9 7 2 13 13 N 1.46900 * 109.47209 * 176.61981 * 12 9 7 14 14 C 1.46903 * 110.99775 * 185.41980 * 13 12 9 15 15 C 1.50706 * 109.46999 * 298.52958 * 14 13 12 16 16 O 1.21283 * 119.99581 * 123.21972 * 15 14 13 17 17 N 1.34775 * 119.99949 * 303.21508 * 15 14 13 18 18 C 1.47151 * 120.98209 * 3.56626 * 17 15 14 19 19 C 1.53714 * 108.16229 * 129.43125 * 18 17 15 20 20 O 1.42965 * 109.14839 * 52.53225 * 19 18 17 21 21 C 1.42958 * 114.16714 * 297.29212 * 20 19 18 22 22 C 1.47154 * 120.98114 * 183.84295 * 17 15 14 23 23 C 1.52998 * 109.46968 * 58.53070 * 14 13 12 24 24 C 1.53005 * 109.46971 * 179.97438 * 23 14 13 25 25 C 1.53000 * 109.47075 * 300.00306 * 24 23 14 26 26 C 1.52998 * 109.47209 * 59.99716 * 25 24 23 27 27 C 1.52996 * 109.47432 * 300.00028 * 26 25 24 28 28 H 0.96999 * 120.00288 * 0.02562 * 1 2 3 29 29 H 0.96701 * 113.99696 * 60.00085 * 11 9 7 30 30 H 1.08998 * 109.47187 * 56.61699 * 12 9 7 31 31 H 1.09004 * 109.46733 * 296.62273 * 12 9 7 32 32 H 1.00893 * 110.99859 * 309.37410 * 13 12 9 33 33 H 1.09000 * 109.68283 * 249.20734 * 18 17 15 34 34 H 1.08998 * 109.68325 * 9.75978 * 18 17 15 35 35 H 1.09003 * 109.65735 * 292.57053 * 19 18 17 36 36 H 1.09004 * 109.44496 * 172.37177 * 19 18 17 37 37 H 1.09001 * 109.51114 * 302.65370 * 21 20 19 38 38 H 1.09002 * 109.55172 * 182.52847 * 21 20 19 39 39 H 1.09003 * 109.67981 * 350.23773 * 22 17 15 40 40 H 1.08997 * 109.67943 * 110.75315 * 22 17 15 41 41 H 1.09005 * 109.46967 * 299.99543 * 23 14 13 42 42 H 1.08991 * 109.47211 * 59.99983 * 23 14 13 43 43 H 1.08994 * 109.47448 * 179.97438 * 24 23 14 44 44 H 1.09001 * 109.46974 * 60.00015 * 24 23 14 45 45 H 1.09001 * 109.46982 * 299.99705 * 25 24 23 46 46 H 1.09001 * 109.47335 * 179.97438 * 25 24 23 47 47 H 1.09000 * 109.47020 * 180.02562 * 26 25 24 48 48 H 1.09001 * 109.47158 * 60.00096 * 26 25 24 49 49 H 1.09004 * 109.47481 * 300.00359 * 27 26 25 50 50 H 1.08994 * 109.47547 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.5526 -2.5154 0.8371 11 8 0.5291 -2.6324 -1.2255 12 6 2.2396 -3.6588 0.1389 13 7 1.5001 -4.9255 0.2203 14 6 2.4088 -6.0496 0.4826 15 6 3.3958 -6.1724 -0.6496 16 8 4.5866 -6.1302 -0.4233 17 7 2.9552 -6.3294 -1.9136 18 6 1.5167 -6.3058 -2.2228 19 6 1.2911 -5.3171 -3.3779 20 8 2.1668 -5.6499 -4.4579 21 6 3.5562 -5.5408 -4.1396 22 6 3.8981 -6.5354 -3.0244 23 6 3.1620 -5.8018 1.7912 24 6 4.1079 -6.9728 2.0647 25 6 3.2986 -8.2662 2.1791 26 6 2.5454 -8.5139 0.8705 27 6 1.5995 -7.3429 0.5970 28 1 -0.4850 0.8400 -0.0004 29 1 1.0887 -2.6260 -2.0141 30 1 2.8321 -3.5251 1.0440 31 1 2.9000 -3.6786 -0.7280 32 1 0.7745 -4.8763 0.9196 33 1 1.1886 -7.3020 -2.5192 34 1 0.9579 -5.9807 -1.3453 35 1 1.5008 -4.3027 -3.0386 36 1 0.2564 -5.3825 -3.7147 37 1 3.7741 -4.5272 -3.8030 38 1 4.1519 -5.7667 -5.0241 39 1 4.9170 -6.3624 -2.6779 40 1 3.8061 -7.5546 -3.3997 41 1 3.7382 -4.8801 1.7097 42 1 2.4481 -5.7129 2.6100 43 1 4.6448 -6.7962 2.9967 44 1 4.8218 -7.0621 1.2459 45 1 2.5847 -8.1769 2.9979 46 1 3.9725 -9.1005 2.3735 47 1 1.9685 -9.4351 0.9522 48 1 3.2593 -8.6032 0.0517 49 1 0.8856 -7.2535 1.4158 50 1 1.0626 -7.5196 -0.3350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934053200.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:32 Heat of formation + Delta-G solvation = -124.823658 kcal Electronic energy + Delta-G solvation = -31396.667581 eV Core-core repulsion = 27423.830182 eV Total energy + Delta-G solvation = -3972.837400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.08672 -38.79888 -37.14288 -36.21356 -34.78765 -33.93204 -32.18259 -31.43879 -30.61756 -29.62253 -27.73976 -27.15949 -24.46997 -24.08350 -23.41221 -22.53617 -21.30738 -20.65380 -20.28822 -18.64116 -17.16388 -16.68447 -16.36249 -16.04927 -15.47430 -15.25233 -15.10827 -14.87880 -14.65665 -14.52935 -14.26388 -14.01518 -13.88504 -13.75295 -13.32561 -13.05265 -12.85579 -12.68561 -12.31976 -12.14007 -12.08563 -11.92016 -11.59799 -11.26682 -11.24371 -11.04015 -11.01632 -10.90810 -10.88983 -10.70684 -10.52156 -10.37660 -10.18594 -10.05592 -9.97635 -9.30247 -9.05865 -8.64367 -8.37684 -8.19308 -7.93109 -6.07965 -4.25376 2.75887 3.05325 3.24618 3.31918 3.34944 3.95694 4.24248 4.41729 4.49307 4.74807 4.80324 4.88009 5.08568 5.09648 5.17792 5.21305 5.23992 5.29181 5.34194 5.41400 5.48834 5.53257 5.61487 5.64084 5.73584 5.75279 5.86083 5.88025 5.96205 6.01034 6.04186 6.09725 6.13116 6.15858 6.20359 6.27123 6.37595 6.45923 6.55244 6.68212 6.77278 7.22454 7.24415 7.51252 7.58379 7.69838 7.79401 8.13013 8.35738 8.79510 9.33526 9.51943 10.96832 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011691 B = 0.004921 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.407297 B = 5688.765019 C = 6951.594775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.082 3.918 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.572 4.572 8 H 0.053 0.947 9 C 0.236 3.764 10 H 0.058 0.942 11 O -0.557 6.557 12 C 0.029 3.971 13 N -0.664 5.664 14 C 0.096 3.904 15 C 0.546 3.454 16 O -0.545 6.545 17 N -0.602 5.602 18 C 0.059 3.941 19 C 0.050 3.950 20 O -0.387 6.387 21 C 0.050 3.950 22 C 0.075 3.925 23 C -0.130 4.130 24 C -0.131 4.131 25 C -0.118 4.118 26 C -0.119 4.119 27 C -0.113 4.113 28 H 0.261 0.739 29 H 0.340 0.660 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.347 0.653 33 H 0.058 0.942 34 H 0.146 0.854 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.057 0.943 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.093 0.907 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.064 0.936 48 H 0.058 0.942 49 H 0.074 0.926 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.399 -16.837 -1.647 17.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.124 4.124 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.610 4.610 8 H 0.072 0.928 9 C 0.178 3.822 10 H 0.076 0.924 11 O -0.360 6.360 12 C -0.100 4.100 13 N -0.296 5.296 14 C 0.002 3.998 15 C 0.334 3.666 16 O -0.422 6.422 17 N -0.336 5.336 18 C -0.064 4.064 19 C -0.027 4.027 20 O -0.306 6.306 21 C -0.028 4.028 22 C -0.048 4.048 23 C -0.169 4.169 24 C -0.169 4.169 25 C -0.155 4.155 26 C -0.157 4.157 27 C -0.151 4.151 28 H 0.071 0.929 29 H 0.183 0.817 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.167 0.833 33 H 0.076 0.924 34 H 0.163 0.837 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.111 0.889 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.077 0.923 49 H 0.093 0.907 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.266 -16.869 -1.961 17.294 hybrid contribution 1.321 1.275 0.842 2.020 sum 4.588 -15.593 -1.119 16.293 Atomic orbital electron populations 1.70044 1.05912 1.26603 1.47104 1.24995 0.94684 0.99110 0.93633 0.86676 0.79990 0.83464 0.78291 1.20471 1.21064 1.19863 1.21586 0.93131 0.91492 1.54804 0.92828 1.19339 0.89140 0.88614 0.85130 0.92379 1.86584 1.38007 1.96108 1.15303 1.23031 0.97856 0.89183 0.99900 1.60815 1.13046 1.03220 1.52541 1.21151 0.92523 0.93785 0.92328 1.20317 0.88827 0.74317 0.83130 1.90573 1.17338 1.51057 1.83208 1.47979 1.07624 1.71692 1.06259 1.23140 0.81367 0.99229 1.02666 1.23091 0.94356 0.98540 0.86678 1.87908 1.15601 1.89689 1.37376 1.22893 0.83349 0.98672 0.97866 1.22243 0.95372 0.99504 0.87723 1.22007 0.99053 0.99936 0.95933 1.21795 0.98739 0.93540 1.02808 1.21544 0.98867 0.97947 0.97179 1.21523 0.98336 0.97653 0.98153 1.21764 0.97672 0.92436 1.03220 0.92896 0.81673 0.94487 0.92461 0.83298 0.92395 0.83659 0.91341 0.87954 0.92497 0.88299 0.88621 0.91278 0.90745 0.91669 0.92673 0.88897 0.92292 0.92389 0.91727 0.92293 0.90741 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.67 13.07 55.43 0.72 -23.94 16 2 C 0.08 2.24 5.43 -17.82 -0.10 2.14 16 3 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.57 -15.22 8.72 -34.44 -0.30 -15.52 16 8 H 0.05 1.43 7.75 -52.49 -0.41 1.03 16 9 C 0.24 5.54 2.86 -27.88 -0.08 5.46 16 10 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 11 O -0.56 -13.09 12.96 -35.23 -0.46 -13.55 16 12 C 0.03 0.55 4.63 -3.82 -0.02 0.53 16 13 N -0.66 -10.15 3.56 -101.14 -0.36 -10.51 16 14 C 0.10 1.34 0.31 -132.75 -0.04 1.30 16 15 C 0.55 8.50 3.88 -10.98 -0.04 8.45 16 16 O -0.54 -9.87 13.02 5.56 0.07 -9.80 16 17 N -0.60 -8.40 3.01 -172.02 -0.52 -8.91 16 18 C 0.06 0.75 4.83 -3.32 -0.02 0.73 16 19 C 0.05 0.68 7.00 37.53 0.26 0.94 16 20 O -0.39 -5.38 10.74 -35.23 -0.38 -5.75 16 21 C 0.05 0.61 6.98 37.31 0.26 0.87 16 22 C 0.07 0.94 6.65 -3.53 -0.02 0.92 16 23 C -0.13 -1.86 4.12 -26.73 -0.11 -1.97 16 24 C -0.13 -1.73 5.63 -26.73 -0.15 -1.88 16 25 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 26 C -0.12 -1.28 5.70 -26.73 -0.15 -1.43 16 27 C -0.11 -1.27 4.66 -26.73 -0.12 -1.40 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.34 7.36 7.56 45.56 0.34 7.70 16 30 H 0.04 0.75 5.99 -51.93 -0.31 0.44 16 31 H 0.06 1.19 7.33 -51.93 -0.38 0.81 16 32 H 0.35 5.17 8.63 -39.30 -0.34 4.83 16 33 H 0.06 0.66 8.05 -51.93 -0.42 0.25 16 34 H 0.15 1.94 3.83 -51.93 -0.20 1.74 16 35 H 0.07 1.05 6.66 -51.93 -0.35 0.71 16 36 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.10 1.28 7.07 -51.93 -0.37 0.91 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.25 6.25 -51.93 -0.32 0.93 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 1.44 5.40 -51.93 -0.28 1.16 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.06 0.73 7.22 -51.93 -0.37 0.35 16 49 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 50 H 0.08 0.85 5.48 -51.93 -0.28 0.57 16 LS Contribution 369.63 15.07 5.57 5.57 Total: -1.00 -30.14 369.63 -8.63 -38.77 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -7.47 Total: 14.47 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -0.79 Total: -2.29 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: -0.15 Total: -43.36 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.76 Total: -29.10 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.14 -8.63 -38.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934053200.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.052 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds