Wall clock time and date at job start Fri Apr 10 2020 18:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99717 * 2 1 4 4 H 1.48496 * 109.47105 * 269.99737 * 3 2 1 5 5 H 1.48504 * 109.47081 * 30.00170 * 3 2 1 6 6 H 1.48501 * 109.46752 * 149.99811 * 3 2 1 7 7 C 1.37880 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99944 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00052 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47133 * 305.47815 * 9 7 2 11 11 O 1.42905 * 109.47218 * 65.47704 * 9 7 2 12 12 C 1.52999 * 109.47257 * 185.47940 * 9 7 2 13 13 N 1.46900 * 109.47209 * 176.61981 * 12 9 7 14 14 C 1.46903 * 110.99775 * 185.41980 * 13 12 9 15 15 C 1.50706 * 109.46999 * 298.52958 * 14 13 12 16 16 O 1.21283 * 119.99581 * 123.21972 * 15 14 13 17 17 N 1.34775 * 119.99949 * 303.21508 * 15 14 13 18 18 C 1.47151 * 120.98209 * 3.56626 * 17 15 14 19 19 C 1.53714 * 108.16229 * 129.43125 * 18 17 15 20 20 O 1.42965 * 109.14839 * 52.53225 * 19 18 17 21 21 C 1.42958 * 114.16714 * 297.29212 * 20 19 18 22 22 C 1.47154 * 120.98114 * 183.84295 * 17 15 14 23 23 C 1.52998 * 109.46968 * 58.53070 * 14 13 12 24 24 C 1.53005 * 109.46971 * 179.97438 * 23 14 13 25 25 C 1.53000 * 109.47075 * 300.00306 * 24 23 14 26 26 C 1.52998 * 109.47209 * 59.99716 * 25 24 23 27 27 C 1.52996 * 109.47432 * 300.00028 * 26 25 24 28 28 H 0.96999 * 120.00288 * 0.02562 * 1 2 3 29 29 H 0.96701 * 113.99696 * 60.00085 * 11 9 7 30 30 H 1.08998 * 109.47187 * 56.61699 * 12 9 7 31 31 H 1.09004 * 109.46733 * 296.62273 * 12 9 7 32 32 H 1.00893 * 110.99859 * 309.37410 * 13 12 9 33 33 H 1.09000 * 109.68283 * 249.20734 * 18 17 15 34 34 H 1.08998 * 109.68325 * 9.75978 * 18 17 15 35 35 H 1.09003 * 109.65735 * 292.57053 * 19 18 17 36 36 H 1.09004 * 109.44496 * 172.37177 * 19 18 17 37 37 H 1.09001 * 109.51114 * 302.65370 * 21 20 19 38 38 H 1.09002 * 109.55172 * 182.52847 * 21 20 19 39 39 H 1.09003 * 109.67981 * 350.23773 * 22 17 15 40 40 H 1.08997 * 109.67943 * 110.75315 * 22 17 15 41 41 H 1.09005 * 109.46967 * 299.99543 * 23 14 13 42 42 H 1.08991 * 109.47211 * 59.99983 * 23 14 13 43 43 H 1.08994 * 109.47448 * 179.97438 * 24 23 14 44 44 H 1.09001 * 109.46974 * 60.00015 * 24 23 14 45 45 H 1.09001 * 109.46982 * 299.99705 * 25 24 23 46 46 H 1.09001 * 109.47335 * 179.97438 * 25 24 23 47 47 H 1.09000 * 109.47020 * 180.02562 * 26 25 24 48 48 H 1.09001 * 109.47158 * 60.00096 * 26 25 24 49 49 H 1.09004 * 109.47481 * 300.00359 * 27 26 25 50 50 H 1.08994 * 109.47547 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.5526 -2.5154 0.8371 11 8 0.5291 -2.6324 -1.2255 12 6 2.2396 -3.6588 0.1389 13 7 1.5001 -4.9255 0.2203 14 6 2.4088 -6.0496 0.4826 15 6 3.3958 -6.1724 -0.6496 16 8 4.5866 -6.1302 -0.4233 17 7 2.9552 -6.3294 -1.9136 18 6 1.5167 -6.3058 -2.2228 19 6 1.2911 -5.3171 -3.3779 20 8 2.1668 -5.6499 -4.4579 21 6 3.5562 -5.5408 -4.1396 22 6 3.8981 -6.5354 -3.0244 23 6 3.1620 -5.8018 1.7912 24 6 4.1079 -6.9728 2.0647 25 6 3.2986 -8.2662 2.1791 26 6 2.5454 -8.5139 0.8705 27 6 1.5995 -7.3429 0.5970 28 1 -0.4850 0.8400 -0.0004 29 1 1.0887 -2.6260 -2.0141 30 1 2.8321 -3.5251 1.0440 31 1 2.9000 -3.6786 -0.7280 32 1 0.7745 -4.8763 0.9196 33 1 1.1886 -7.3020 -2.5192 34 1 0.9579 -5.9807 -1.3453 35 1 1.5008 -4.3027 -3.0386 36 1 0.2564 -5.3825 -3.7147 37 1 3.7741 -4.5272 -3.8030 38 1 4.1519 -5.7667 -5.0241 39 1 4.9170 -6.3624 -2.6779 40 1 3.8061 -7.5546 -3.3997 41 1 3.7382 -4.8801 1.7097 42 1 2.4481 -5.7129 2.6100 43 1 4.6448 -6.7962 2.9967 44 1 4.8218 -7.0621 1.2459 45 1 2.5847 -8.1769 2.9979 46 1 3.9725 -9.1005 2.3735 47 1 1.9685 -9.4351 0.9522 48 1 3.2593 -8.6032 0.0517 49 1 0.8856 -7.2535 1.4158 50 1 1.0626 -7.5196 -0.3350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934053200.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:31 Heat of formation + Delta-G solvation = -147.047030 kcal Electronic energy + Delta-G solvation = -31397.631259 eV Core-core repulsion = 27423.830182 eV Total energy + Delta-G solvation = -3973.801077 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.24564 -39.87469 -38.47149 -37.77901 -36.01012 -35.26445 -34.26058 -32.51692 -31.63249 -31.01872 -29.04756 -28.61068 -26.06710 -25.28402 -24.52798 -23.68444 -22.58484 -22.08168 -21.38490 -19.77123 -19.05531 -17.98847 -17.55226 -17.19802 -16.71292 -16.61202 -16.36956 -16.35705 -16.12398 -15.84389 -15.64830 -15.22236 -15.12180 -14.92437 -14.69747 -14.45621 -14.09619 -14.02249 -13.57762 -13.35715 -13.14933 -13.11044 -12.98190 -12.87866 -12.76551 -12.65815 -12.54724 -12.27356 -12.08870 -11.97802 -11.74257 -11.59187 -11.35997 -11.17882 -11.11432 -10.99866 -10.74254 -10.48573 -10.10125 -9.49589 -9.27333 -8.17759 -6.41536 1.36615 1.38255 1.47818 1.54835 1.95738 2.35617 2.92744 3.05394 3.12014 3.39203 3.73486 3.78531 3.85481 4.07301 4.10479 4.13495 4.19643 4.22721 4.25738 4.33505 4.36761 4.44310 4.49971 4.53790 4.55493 4.61778 4.67293 4.75792 4.82964 4.87152 4.92357 4.98937 5.03102 5.09878 5.12281 5.18060 5.24166 5.31858 5.33647 5.49449 5.57542 5.61679 5.73520 5.83434 6.08590 6.17162 6.32272 6.40863 6.71119 7.16828 7.32242 7.53328 8.86671 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011691 B = 0.004921 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.407297 B = 5688.765019 C = 6951.594775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.035 3.965 3 Si 0.950 3.050 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.272 1.272 7 C -0.588 4.588 8 H 0.045 0.955 9 C 0.242 3.758 10 H 0.034 0.966 11 O -0.563 6.563 12 C 0.058 3.942 13 N -0.652 5.652 14 C 0.099 3.901 15 C 0.538 3.462 16 O -0.577 6.577 17 N -0.602 5.602 18 C 0.062 3.938 19 C 0.051 3.949 20 O -0.393 6.393 21 C 0.051 3.949 22 C 0.074 3.926 23 C -0.129 4.129 24 C -0.128 4.128 25 C -0.114 4.114 26 C -0.115 4.115 27 C -0.109 4.109 28 H 0.263 0.737 29 H 0.347 0.653 30 H 0.025 0.975 31 H 0.040 0.960 32 H 0.354 0.646 33 H 0.082 0.918 34 H 0.141 0.859 35 H 0.043 0.957 36 H 0.118 0.882 37 H 0.036 0.964 38 H 0.128 0.872 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.040 0.960 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.091 0.909 48 H 0.041 0.959 49 H 0.092 0.908 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.863 -18.496 -1.783 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.168 4.168 3 Si 0.775 3.225 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.196 1.196 7 C -0.626 4.626 8 H 0.064 0.936 9 C 0.184 3.816 10 H 0.052 0.948 11 O -0.366 6.366 12 C -0.072 4.072 13 N -0.284 5.284 14 C 0.005 3.995 15 C 0.327 3.673 16 O -0.457 6.457 17 N -0.335 5.335 18 C -0.060 4.060 19 C -0.026 4.026 20 O -0.312 6.312 21 C -0.026 4.026 22 C -0.049 4.049 23 C -0.169 4.169 24 C -0.166 4.166 25 C -0.151 4.151 26 C -0.152 4.152 27 C -0.146 4.146 28 H 0.072 0.928 29 H 0.192 0.808 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.174 0.826 33 H 0.100 0.900 34 H 0.158 0.842 35 H 0.061 0.939 36 H 0.136 0.864 37 H 0.055 0.945 38 H 0.146 0.854 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.059 0.941 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.109 0.891 48 H 0.060 0.940 49 H 0.110 0.890 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.721 -18.541 -2.113 18.858 hybrid contribution 1.518 1.768 0.846 2.479 sum 4.238 -16.773 -1.267 17.347 Atomic orbital electron populations 1.70143 1.07224 1.27462 1.48241 1.25724 0.95442 1.02327 0.93284 0.85705 0.78751 0.79599 0.78408 1.19963 1.20417 1.19636 1.21945 0.93016 0.93231 1.54452 0.93631 1.19109 0.88862 0.89252 0.84412 0.94836 1.86525 1.38355 1.96130 1.15580 1.22457 0.96342 0.89832 0.98523 1.60709 1.12899 1.01854 1.52977 1.21221 0.92289 0.94411 0.91542 1.20616 0.88657 0.74036 0.83974 1.90566 1.18697 1.52615 1.83781 1.48094 1.08457 1.70769 1.06146 1.23172 0.80510 1.00239 1.02111 1.23090 0.95184 0.97333 0.87000 1.87901 1.16161 1.89548 1.37588 1.22983 0.83106 0.97534 0.98980 1.22336 0.94570 1.00693 0.87289 1.21985 0.99248 0.98986 0.96660 1.21727 0.98423 0.94525 1.01940 1.21532 0.99068 0.96654 0.97862 1.21512 0.98019 0.98396 0.97321 1.21795 0.97645 0.90717 1.04477 0.92792 0.80833 0.95695 0.94116 0.82597 0.90030 0.84166 0.93902 0.86391 0.94509 0.85426 0.89754 0.89182 0.94130 0.90349 0.92306 0.91369 0.90757 0.91263 0.89075 0.94035 0.88959 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.74 13.07 21.45 0.28 -51.46 16 2 C 0.04 1.95 5.43 84.65 0.46 2.41 16 3 Si 0.95 43.33 29.54 68.60 2.03 45.36 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.59 -31.97 8.72 25.60 0.22 -31.75 16 8 H 0.05 2.50 7.75 -2.91 -0.02 2.47 16 9 C 0.24 11.64 2.86 29.85 0.09 11.73 16 10 H 0.03 1.79 8.14 -2.39 -0.02 1.77 16 11 O -0.56 -26.82 12.96 -148.98 -1.93 -28.75 16 12 C 0.06 2.29 4.63 86.30 0.40 2.69 16 13 N -0.65 -19.77 3.56 -473.88 -1.69 -21.46 16 14 C 0.10 2.69 0.31 2.78 0.00 2.69 16 15 C 0.54 16.76 3.88 87.66 0.34 17.10 16 16 O -0.58 -21.53 13.02 -3.04 -0.04 -21.57 16 17 N -0.60 -16.37 3.01 -816.54 -2.46 -18.83 16 18 C 0.06 1.48 4.83 86.50 0.42 1.90 16 19 C 0.05 1.32 7.00 72.22 0.51 1.83 16 20 O -0.39 -10.39 10.74 -148.98 -1.60 -11.99 16 21 C 0.05 1.22 6.98 72.08 0.50 1.73 16 22 C 0.07 1.80 6.65 86.35 0.57 2.37 16 23 C -0.13 -3.69 4.12 30.60 0.13 -3.57 16 24 C -0.13 -3.32 5.63 30.60 0.17 -3.15 16 25 C -0.11 -2.20 5.92 30.59 0.18 -2.02 16 26 C -0.11 -2.15 5.70 30.59 0.17 -1.97 16 27 C -0.11 -2.17 4.66 30.59 0.14 -2.02 16 28 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.35 15.37 7.56 -74.06 -0.56 14.81 16 30 H 0.02 1.05 5.99 -2.39 -0.01 1.04 16 31 H 0.04 1.75 7.33 -2.38 -0.02 1.73 16 32 H 0.35 10.24 8.63 -89.70 -0.77 9.47 16 33 H 0.08 1.61 8.05 -2.39 -0.02 1.60 16 34 H 0.14 3.52 3.83 -2.39 -0.01 3.52 16 35 H 0.04 1.33 6.66 -2.39 -0.02 1.31 16 36 H 0.12 2.66 8.14 -2.38 -0.02 2.64 16 37 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.08 2.27 7.07 -2.39 -0.02 2.25 16 40 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.04 1.42 6.25 -2.38 -0.01 1.40 16 42 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.07 2.15 5.40 -2.39 -0.01 2.14 16 45 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.04 0.94 7.22 -2.39 -0.02 0.92 16 49 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.09 1.62 5.48 -2.39 -0.01 1.61 16 Total: -1.00 -65.90 369.63 -1.48 -67.38 By element: Atomic # 1 Polarization: 41.74 SS G_CDS: -0.37 Total: 41.36 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 4.31 Total: -0.04 kcal Atomic # 7 Polarization: -87.88 SS G_CDS: -3.87 Total: -91.75 kcal Atomic # 8 Polarization: -58.74 SS G_CDS: -3.57 Total: -62.31 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -65.90 -1.48 -67.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934053200.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.665 kcal (2) G-P(sol) polarization free energy of solvation -65.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds