Wall clock time and date at job start Fri Apr 10 2020 18:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 114.00114 * 2 1 4 4 H 1.08999 * 109.46967 * 29.99773 * 3 2 1 5 5 C 1.50697 * 109.47122 * 269.99908 * 3 2 1 6 6 O 1.21278 * 120.00202 * 334.22417 * 5 3 2 7 7 N 1.34776 * 119.99730 * 154.22506 * 5 3 2 8 8 C 1.47485 * 125.66448 * 354.98143 * 7 5 3 9 9 C 1.55030 * 104.90315 * 204.02468 * 8 7 5 10 10 C 1.54517 * 101.51461 * 323.62347 * 9 8 7 11 11 C 1.47190 * 125.66208 * 174.67394 * 7 5 3 12 12 C 1.52522 * 110.05698 * 153.09931 * 10 9 8 13 13 N 1.47314 * 108.37733 * 72.02236 * 12 10 9 14 14 C 1.36940 * 121.05429 * 229.38920 * 13 12 10 15 15 H 1.07997 * 119.99606 * 147.15348 * 14 13 12 16 16 C 1.38809 * 120.00146 * 327.15928 * 14 13 12 17 17 N 1.31617 * 120.00140 * 358.46010 * 16 14 13 18 18 Si 1.86802 * 119.99923 * 178.46521 * 16 14 13 19 19 H 1.48503 * 109.46994 * 89.99619 * 18 16 14 20 20 H 1.48491 * 109.47337 * 209.99940 * 18 16 14 21 21 H 1.48500 * 109.47139 * 329.99973 * 18 16 14 22 22 C 1.47159 * 117.88254 * 49.41817 * 13 12 10 23 23 C 1.53276 * 108.54039 * 308.88342 * 22 13 12 24 24 O 1.42071 * 110.33659 * 276.04610 * 10 9 8 25 25 C 1.53005 * 109.47039 * 149.99792 * 3 2 1 26 26 C 1.53001 * 109.46674 * 185.46927 * 25 3 2 27 27 C 1.52992 * 109.47108 * 305.47074 * 25 3 2 28 28 H 1.09007 * 109.47269 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47041 * 300.00233 * 1 2 3 30 30 H 1.09006 * 109.46912 * 60.00038 * 1 2 3 31 31 H 1.09001 * 110.35130 * 322.87777 * 8 7 5 32 32 H 1.08995 * 110.35502 * 85.17049 * 8 7 5 33 33 H 1.09004 * 111.01462 * 81.67742 * 9 8 7 34 34 H 1.09000 * 111.01787 * 205.52543 * 9 8 7 35 35 H 1.09001 * 109.90794 * 297.85459 * 11 7 5 36 36 H 1.09002 * 109.90899 * 59.12215 * 11 7 5 37 37 H 1.09000 * 109.68363 * 191.73896 * 12 10 9 38 38 H 1.08995 * 109.68319 * 312.26052 * 12 10 9 39 39 H 0.97006 * 119.99788 * 180.02562 * 17 16 14 40 40 H 1.08994 * 109.62636 * 68.60644 * 22 13 12 41 41 H 1.09002 * 109.62088 * 188.97944 * 22 13 12 42 42 H 1.09007 * 109.50957 * 172.80803 * 23 22 13 43 43 H 1.08997 * 109.50980 * 292.95178 * 23 22 13 44 44 H 1.09000 * 109.46886 * 65.47780 * 25 3 2 45 45 H 1.08996 * 109.47594 * 294.35932 * 26 25 3 46 46 H 1.09005 * 109.47269 * 54.36515 * 26 25 3 47 47 H 1.09003 * 109.46733 * 174.35610 * 26 25 3 48 48 H 1.08995 * 109.47317 * 60.00275 * 27 25 3 49 49 H 1.08999 * 109.47049 * 179.97438 * 27 25 3 50 50 H 1.09001 * 109.47124 * 299.99871 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2146 1.7643 -1.4208 6 8 2.3513 0.9486 -2.3078 7 7 2.2453 3.0813 -1.7057 8 6 1.9901 4.1742 -0.7489 9 6 1.5360 5.3714 -1.6230 10 6 2.4227 5.1925 -2.8758 11 6 2.5455 3.6677 -3.0220 12 6 1.7342 5.7978 -4.0947 13 7 1.7763 7.2651 -3.9710 14 6 0.6477 8.0213 -4.1435 15 1 0.5172 8.9329 -3.5793 16 6 -0.3285 7.6160 -5.0432 17 7 -0.1557 6.5210 -5.7527 18 14 -1.8875 8.6247 -5.2470 19 1 -1.6831 9.6425 -6.3090 20 1 -3.0097 7.7301 -5.6282 21 1 -2.2088 9.3036 -3.9660 22 6 3.0699 7.8924 -3.6568 23 6 3.6668 7.1913 -2.4315 24 8 3.6990 5.7799 -2.6653 25 6 3.3589 1.2632 0.7213 26 6 3.9176 2.6825 0.8414 27 6 3.1715 0.6688 2.1186 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.2003 3.8920 -0.0528 32 1 2.9023 4.4248 -0.2074 33 1 0.4791 5.2909 -1.8775 34 1 1.7455 6.3192 -1.1272 35 1 3.5584 3.4018 -3.3245 36 1 1.8286 3.3088 -3.7604 37 1 2.2559 5.4908 -5.0012 38 1 0.6981 5.4618 -4.1357 39 1 -0.8378 6.2380 -6.3818 40 1 3.7450 7.7842 -4.5056 41 1 2.9208 8.9503 -3.4403 42 1 4.6801 7.5554 -2.2613 43 1 3.0519 7.4014 -1.5564 44 1 4.0551 0.6455 0.1540 45 1 4.1451 3.0688 -0.1521 46 1 3.1784 3.3246 1.3205 47 1 4.8273 2.6652 1.4417 48 1 2.7736 -0.3422 2.0330 49 1 4.1324 0.6383 2.6323 50 1 2.4753 1.2866 2.6858 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972532660.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:54 Heat of formation + Delta-G solvation = -109.316207 kcal Electronic energy + Delta-G solvation = -30544.174750 eV Core-core repulsion = 26572.009804 eV Total energy + Delta-G solvation = -3972.164946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.88043 -40.59486 -38.63348 -37.53583 -36.27868 -35.96269 -33.26324 -32.86732 -30.92917 -29.55603 -28.91209 -28.18197 -27.42466 -26.39892 -25.17540 -23.95839 -23.08884 -21.80135 -20.53988 -20.15195 -18.97905 -18.78370 -17.91131 -17.45008 -17.07729 -16.73406 -16.62809 -16.14221 -15.90483 -15.73452 -15.37879 -15.22697 -15.09262 -14.66936 -14.50382 -14.29721 -14.08973 -13.89439 -13.69993 -13.61153 -13.34116 -13.15043 -12.91700 -12.83213 -12.67415 -12.56698 -12.41663 -12.26912 -12.14857 -12.12026 -11.93255 -11.86839 -11.83050 -11.59802 -11.47779 -11.16833 -10.73072 -10.50900 -10.36985 -9.77005 -8.63148 -7.89704 -5.45558 1.43326 1.46332 1.47474 1.56207 1.73707 2.46284 2.69022 2.76518 3.25371 3.30015 3.50374 3.56587 3.73272 3.79135 3.91631 4.01158 4.19635 4.24563 4.29745 4.31571 4.39117 4.40583 4.46580 4.50511 4.52885 4.62219 4.65300 4.70319 4.78345 4.79000 4.84041 4.91648 4.97712 5.04806 5.05796 5.08128 5.13668 5.15301 5.21895 5.28764 5.35459 5.47571 5.56775 5.60956 5.95502 6.33100 6.38694 6.46096 7.02263 7.08547 7.74335 8.31832 9.15233 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.016613 B = 0.003687 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.986934 B = 7591.641044 C = 8445.345142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.377 6.377 3 C 0.089 3.911 4 H 0.110 0.890 5 C 0.498 3.502 6 O -0.581 6.581 7 N -0.606 5.606 8 C 0.097 3.903 9 C -0.137 4.137 10 C 0.096 3.904 11 C 0.129 3.871 12 C 0.176 3.824 13 N -0.609 5.609 14 C -0.259 4.259 15 H 0.076 0.924 16 C -0.046 4.046 17 N -0.939 5.939 18 Si 0.969 3.031 19 H -0.288 1.288 20 H -0.297 1.297 21 H -0.262 1.262 22 C 0.102 3.898 23 C 0.052 3.948 24 O -0.382 6.382 25 C -0.083 4.083 26 C -0.156 4.156 27 C -0.134 4.134 28 H 0.103 0.897 29 H 0.073 0.927 30 H 0.024 0.976 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.065 0.935 36 H 0.058 0.942 37 H -0.014 1.014 38 H 0.070 0.930 39 H 0.249 0.751 40 H 0.011 0.989 41 H 0.076 0.924 42 H 0.120 0.880 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.045 0.955 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.055 0.945 49 H 0.072 0.928 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.780 -5.507 19.870 21.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.294 6.294 3 C 0.028 3.972 4 H 0.127 0.873 5 C 0.288 3.712 6 O -0.461 6.461 7 N -0.340 5.340 8 C -0.024 4.024 9 C -0.175 4.175 10 C 0.054 3.946 11 C 0.005 3.995 12 C 0.050 3.950 13 N -0.334 5.334 14 C -0.389 4.389 15 H 0.093 0.907 16 C -0.241 4.241 17 N -0.585 5.585 18 Si 0.797 3.203 19 H -0.214 1.214 20 H -0.224 1.224 21 H -0.187 1.187 22 C -0.023 4.023 23 C -0.025 4.025 24 O -0.301 6.301 25 C -0.102 4.102 26 C -0.213 4.213 27 C -0.191 4.191 28 H 0.122 0.878 29 H 0.091 0.909 30 H 0.043 0.957 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.004 0.996 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.029 0.971 41 H 0.094 0.906 42 H 0.138 0.862 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.102 0.898 47 H 0.100 0.900 48 H 0.074 0.926 49 H 0.091 0.909 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.002 -6.352 19.325 20.948 hybrid contribution -1.306 0.684 -1.664 2.223 sum 3.695 -5.668 17.661 18.913 Atomic orbital electron populations 1.23076 0.79468 1.04400 1.00562 1.87963 1.21385 1.25859 1.94219 1.22326 0.98827 0.86576 0.89452 0.87267 1.21876 0.76074 0.80263 0.92993 1.90672 1.51565 1.53530 1.50331 1.48738 1.68510 1.05542 1.11251 1.22963 1.02733 0.84953 0.91782 1.23094 0.99504 0.99406 0.95547 1.22302 0.84815 0.90727 0.96727 1.21530 1.00633 0.91262 0.86043 1.20928 0.98898 0.83965 0.91257 1.44240 1.04452 1.01314 1.83372 1.19500 0.96531 1.05988 1.16849 0.90663 1.26026 1.03136 0.98756 0.96203 1.70107 1.35426 1.25220 1.27735 0.85245 0.78810 0.77870 0.78365 1.21443 1.22383 1.18653 1.21825 0.87066 0.97582 0.95866 1.23201 1.02451 0.79924 0.96904 1.87683 1.27527 1.22675 1.92204 1.21126 0.92316 0.99086 0.97680 1.22177 1.02700 0.94232 1.02151 1.21702 1.02953 1.01111 0.93324 0.87814 0.90857 0.95705 0.87896 0.87830 0.91445 0.88117 0.91662 0.92349 0.99627 0.91162 0.94139 0.97127 0.90587 0.86241 0.91671 0.92346 0.93600 0.89782 0.90003 0.92614 0.90941 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.81 113.37 1.23 1.63 16 2 O -0.38 -9.68 9.11 -131.35 -1.20 -10.87 16 3 C 0.09 2.08 1.80 29.85 0.05 2.13 16 4 H 0.11 1.86 6.30 -2.39 -0.02 1.85 16 5 C 0.50 16.24 6.50 87.66 0.57 16.81 16 6 O -0.58 -24.81 17.02 14.61 0.25 -24.56 16 7 N -0.61 -18.66 2.74 -812.26 -2.23 -20.89 16 8 C 0.10 2.24 5.04 86.89 0.44 2.68 16 9 C -0.14 -4.19 5.91 31.80 0.19 -4.00 16 10 C 0.10 3.58 0.83 -10.21 -0.01 3.57 16 11 C 0.13 4.83 6.25 86.47 0.54 5.37 16 12 C 0.18 8.48 3.88 86.07 0.33 8.81 16 13 N -0.61 -29.28 2.94 -698.64 -2.05 -31.33 16 14 C -0.26 -13.42 9.64 84.03 0.81 -12.61 16 15 H 0.08 3.70 7.83 -2.91 -0.02 3.68 16 16 C -0.05 -2.47 5.25 84.86 0.45 -2.03 16 17 N -0.94 -54.79 10.80 21.65 0.23 -54.56 16 18 Si 0.97 43.27 29.55 68.60 2.03 45.30 16 19 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 20 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 21 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 22 C 0.10 3.96 6.72 86.35 0.58 4.54 16 23 C 0.05 1.59 6.76 72.07 0.49 2.07 16 24 O -0.38 -13.45 10.21 -148.98 -1.52 -14.98 16 25 C -0.08 -1.59 2.68 -10.79 -0.03 -1.62 16 26 C -0.16 -2.44 7.20 71.98 0.52 -1.92 16 27 C -0.13 -1.85 8.99 71.98 0.65 -1.20 16 28 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.07 0.98 8.08 -2.39 -0.02 0.96 16 30 H 0.02 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.10 1.74 6.91 -2.39 -0.02 1.72 16 32 H 0.10 2.00 5.26 -2.39 -0.01 1.99 16 33 H 0.07 2.32 7.86 -2.38 -0.02 2.31 16 34 H 0.10 2.84 5.98 -2.39 -0.01 2.82 16 35 H 0.07 2.53 8.06 -2.39 -0.02 2.51 16 36 H 0.06 2.46 7.79 -2.39 -0.02 2.44 16 37 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 38 H 0.07 3.81 6.02 -2.39 -0.01 3.80 16 39 H 0.25 14.26 8.31 -92.70 -0.77 13.49 16 40 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.08 2.72 7.96 -2.39 -0.02 2.70 16 42 H 0.12 2.81 8.14 -2.38 -0.02 2.79 16 43 H 0.07 1.79 6.13 -2.39 -0.01 1.78 16 44 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.04 0.95 5.86 -2.39 -0.01 0.94 16 46 H 0.08 0.95 6.90 -2.38 -0.02 0.94 16 47 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.05 0.90 7.55 -2.39 -0.02 0.88 16 49 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -72.69 378.04 3.24 -69.45 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.92 Total: 18.21 kcal Atomic # 6 Polarization: 17.43 SS G_CDS: 6.80 Total: 24.23 kcal Atomic # 7 Polarization: -102.73 SS G_CDS: -4.04 Total: -106.78 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: -2.47 Total: -50.41 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -72.69 3.24 -69.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972532660.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.863 kcal (2) G-P(sol) polarization free energy of solvation -72.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds