Wall clock time and date at job start Fri Apr 10 2020 18:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00393 * 2 1 4 4 H 1.48505 * 109.47389 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47017 * 299.99444 * 3 2 1 6 6 H 1.48498 * 109.47482 * 59.99282 * 3 2 1 7 7 C 1.38816 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00360 * 190.50108 * 7 2 1 9 9 N 1.36936 * 119.99973 * 10.50520 * 7 2 1 10 10 C 1.47168 * 121.07790 * 210.39406 * 9 7 2 11 11 C 1.53273 * 108.55770 * 231.24573 * 10 9 7 12 12 O 1.43123 * 109.23337 * 307.00408 * 11 10 9 13 13 C 1.41882 * 114.36947 * 60.90368 * 12 11 10 14 14 C 1.54348 * 110.75562 * 176.66704 * 13 12 11 15 15 C 1.54470 * 102.94459 * 276.13199 * 14 13 12 16 16 N 1.47087 * 107.29175 * 338.84668 * 15 14 13 17 17 C 1.34779 * 125.63295 * 178.90139 * 16 15 14 18 18 O 1.21274 * 120.00104 * 184.23000 * 17 16 15 19 19 C 1.50704 * 119.99646 * 4.22673 * 17 16 15 20 20 C 1.53002 * 112.90805 * 294.12357 * 19 17 16 21 21 F 1.39898 * 109.47111 * 283.71026 * 20 19 17 22 22 C 1.53780 * 113.61415 * 162.87644 * 19 17 16 23 23 C 1.53783 * 87.08135 * 220.01885 * 22 19 17 24 24 C 1.53775 * 113.61657 * 65.37415 * 19 17 16 25 25 C 1.47574 * 108.73999 * 358.63504 * 16 15 14 26 26 C 1.47328 * 121.07172 * 30.41622 * 9 7 2 27 27 H 0.97001 * 119.99396 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.62205 * 111.52068 * 10 9 7 29 29 H 1.09004 * 109.77161 * 351.05880 * 10 9 7 30 30 H 1.08997 * 109.51418 * 187.07716 * 11 10 9 31 31 H 1.09002 * 109.51154 * 66.92793 * 11 10 9 32 32 H 1.09003 * 110.73838 * 34.66971 * 14 13 12 33 33 H 1.09005 * 110.73715 * 157.98343 * 14 13 12 34 34 H 1.08997 * 109.99145 * 219.36697 * 15 14 13 35 35 H 1.08997 * 109.77750 * 98.20449 * 15 14 13 36 36 H 1.08999 * 109.46998 * 43.70666 * 20 19 17 37 37 H 1.08998 * 109.47381 * 163.70784 * 20 19 17 38 38 H 1.08997 * 113.61895 * 105.46825 * 22 19 17 39 39 H 1.09004 * 113.68755 * 334.57197 * 22 19 17 40 40 H 1.08998 * 113.62002 * 139.97425 * 23 22 19 41 41 H 1.09005 * 113.61008 * 270.88571 * 23 22 19 42 42 H 1.09005 * 113.61380 * 25.42963 * 24 19 17 43 43 H 1.08997 * 113.61562 * 254.53475 * 24 19 17 44 44 H 1.09008 * 110.37656 * 142.37805 * 25 16 15 45 45 H 1.08996 * 110.38108 * 264.61602 * 25 16 15 46 46 H 1.08994 * 109.68068 * 11.07098 * 26 9 7 47 47 H 1.09004 * 109.68190 * 250.52480 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0767 -1.2101 0.1710 9 7 1.3427 -2.3782 -0.2152 10 6 1.8054 -3.6367 0.3916 11 6 1.9153 -4.6975 -0.7093 12 8 0.6751 -4.7698 -1.4199 13 6 0.2976 -3.5628 -2.0630 14 6 -1.0040 -3.7567 -2.8697 15 6 -0.4986 -4.3434 -4.2062 16 7 0.9229 -3.9867 -4.3306 17 6 1.7329 -4.3324 -5.3509 18 8 2.9111 -4.0477 -5.3130 19 6 1.1743 -5.0729 -6.5387 20 6 0.6828 -6.4785 -6.1869 21 9 1.7807 -7.3322 -6.0360 22 6 2.0872 -5.0312 -7.7755 23 6 0.8107 -4.8524 -8.6143 24 6 0.1619 -4.2528 -7.3555 25 6 1.3143 -3.1822 -3.1570 26 6 0.1384 -2.4246 -1.0626 27 1 -0.4849 0.8401 -0.0004 28 1 1.0897 -3.9643 1.1455 29 1 2.7810 -3.4863 0.8539 30 1 2.1349 -5.6663 -0.2607 31 1 2.7145 -4.4252 -1.3987 32 1 -1.6699 -4.4570 -2.3654 33 1 -1.5013 -2.8010 -3.0355 34 1 -1.0615 -3.9175 -5.0367 35 1 -0.6091 -5.4277 -4.1983 36 1 0.1189 -6.4435 -5.2548 37 1 0.0411 -6.8496 -6.9861 38 1 2.6071 -5.9699 -7.9664 39 1 2.7509 -4.1669 -7.8010 40 1 0.9210 -4.1387 -9.4307 41 1 0.3611 -5.7935 -8.9311 42 1 0.2986 -3.1751 -7.2649 43 1 -0.8723 -4.5631 -7.2072 44 1 2.3256 -3.4388 -2.8411 45 1 1.2475 -2.1188 -3.3863 46 1 0.0280 -1.4803 -1.5955 47 1 -0.7403 -2.6015 -0.4423 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972560612.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:58 Heat of formation + Delta-G solvation = -72.478327 kcal Electronic energy + Delta-G solvation = -30225.299379 eV Core-core repulsion = 26131.271538 eV Total energy + Delta-G solvation = -4094.027841 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -47.78173 -40.72635 -39.40380 -37.51709 -36.12855 -34.45905 -31.85410 -31.26721 -29.50572 -28.96698 -27.51380 -26.05126 -25.85936 -24.57721 -23.27636 -23.03207 -21.11268 -20.30141 -18.80453 -18.72465 -17.41816 -16.94404 -16.29787 -16.19925 -16.07579 -15.74907 -15.24100 -14.92709 -14.85912 -14.37727 -14.31574 -14.16197 -13.56831 -13.53155 -13.18882 -12.95637 -12.75285 -12.65106 -12.24549 -12.16975 -11.98661 -11.86465 -11.66706 -11.40955 -11.20416 -11.05802 -10.95300 -10.87230 -10.76629 -10.65392 -10.54892 -10.46644 -10.26234 -10.01692 -9.55758 -9.47941 -9.05366 -8.59294 -8.36947 -6.71823 -5.87985 -3.35799 2.70987 3.10068 3.32161 3.40427 3.42829 3.98649 4.07128 4.19568 4.32912 4.40107 4.44813 4.58238 4.71554 4.80161 4.83563 4.98163 5.06551 5.28977 5.30956 5.36140 5.38164 5.44699 5.53168 5.58650 5.60798 5.67014 5.78854 5.82157 5.87441 5.88384 6.00748 6.05947 6.10177 6.15189 6.23722 6.25848 6.46308 6.52950 6.62861 6.78604 7.02434 7.38898 7.69998 7.70823 7.90541 8.31164 8.32235 9.08936 9.69597 10.28987 11.20439 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.017081 B = 0.003898 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.890041 B = 7182.178876 C = 7737.795074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.006 3.994 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.252 4.252 8 H 0.068 0.932 9 N -0.595 5.595 10 C 0.110 3.890 11 C 0.045 3.955 12 O -0.374 6.374 13 C 0.085 3.915 14 C -0.116 4.116 15 C 0.100 3.900 16 N -0.610 5.610 17 C 0.542 3.458 18 O -0.536 6.536 19 C -0.142 4.142 20 C 0.085 3.915 21 F -0.208 7.208 22 C -0.108 4.108 23 C -0.142 4.142 24 C -0.116 4.116 25 C 0.094 3.906 26 C 0.166 3.834 27 H 0.255 0.745 28 H 0.027 0.973 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.095 0.905 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.734 -11.219 -14.122 18.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.192 4.192 3 Si 0.734 3.266 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.382 4.382 8 H 0.085 0.915 9 N -0.319 5.319 10 C -0.016 4.016 11 C -0.033 4.033 12 O -0.293 6.293 13 C 0.042 3.958 14 C -0.155 4.155 15 C -0.023 4.023 16 N -0.343 5.343 17 C 0.329 3.671 18 O -0.412 6.412 19 C -0.145 4.145 20 C 0.030 3.970 21 F -0.189 7.189 22 C -0.146 4.146 23 C -0.180 4.180 24 C -0.154 4.154 25 C -0.028 4.028 26 C 0.040 3.960 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.113 0.887 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.217 -11.107 -14.143 18.470 hybrid contribution 0.576 1.085 0.243 1.252 sum -3.641 -10.022 -13.900 17.518 Atomic orbital electron populations 1.69965 1.05224 1.25537 1.54291 1.25145 0.95450 0.98385 1.00241 0.86188 0.79422 0.83669 0.77340 1.20144 1.21479 1.21535 1.19224 0.90912 0.83520 1.44520 0.91478 1.44063 1.30614 1.03447 1.53745 1.21592 0.98772 0.87629 0.93600 1.23109 0.85994 0.99616 0.94596 1.87610 1.39876 1.33347 1.68439 1.22725 0.92419 0.88160 0.92455 1.22551 0.97024 1.02559 0.93320 1.22226 0.81718 0.99686 0.98628 1.48581 1.10994 1.53151 1.21606 1.19745 0.85624 0.79386 0.82323 1.90695 1.15705 1.55568 1.79273 1.22761 1.00918 0.96358 0.94478 1.21850 0.85910 0.85560 1.03669 1.92793 1.57058 1.71725 1.97319 1.22768 0.96215 1.03925 0.91642 1.22891 0.96938 1.01347 0.96802 1.22888 0.97707 1.00108 0.94671 1.22769 1.00742 0.95225 0.84028 1.21148 0.89335 0.94970 0.90587 0.93529 0.95506 0.91882 0.89902 0.93495 0.89170 0.88880 0.91364 0.91527 0.89593 0.89667 0.90424 0.88657 0.90621 0.89820 0.88979 0.90247 0.89915 0.90367 0.88709 0.94799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.19 11.10 55.49 0.62 -24.57 16 2 C 0.01 0.18 5.07 -17.43 -0.09 0.09 16 3 Si 0.90 21.36 29.57 -169.99 -5.03 16.33 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.25 -6.76 9.65 -15.06 -0.15 -6.91 16 8 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 9 N -0.59 -14.56 2.97 -172.25 -0.51 -15.07 16 10 C 0.11 2.32 6.71 -3.54 -0.02 2.29 16 11 C 0.04 0.83 6.78 37.30 0.25 1.08 16 12 O -0.37 -7.15 10.28 -35.22 -0.36 -7.51 16 13 C 0.08 1.57 0.83 -89.65 -0.07 1.49 16 14 C -0.12 -1.65 6.12 -25.25 -0.15 -1.80 16 15 C 0.10 1.24 5.90 -2.95 -0.02 1.22 16 16 N -0.61 -9.75 3.33 -170.75 -0.57 -10.32 16 17 C 0.54 8.94 6.80 -10.98 -0.07 8.86 16 18 O -0.54 -11.12 16.41 5.56 0.09 -11.02 16 19 C -0.14 -1.66 0.58 -154.85 -0.09 -1.75 16 20 C 0.08 0.88 6.70 37.16 0.25 1.13 16 21 F -0.21 -2.85 16.81 2.25 0.04 -2.81 16 22 C -0.11 -1.19 6.80 -25.92 -0.18 -1.37 16 23 C -0.14 -1.10 7.73 -25.92 -0.20 -1.30 16 24 C -0.12 -1.01 6.00 -25.92 -0.16 -1.17 16 25 C 0.09 1.79 5.87 -2.87 -0.02 1.78 16 26 C 0.17 3.75 4.01 -3.91 -0.02 3.73 16 27 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 1.27 7.97 -51.93 -0.41 0.86 16 30 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.05 0.92 6.25 -51.93 -0.32 0.60 16 32 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.09 1.25 8.00 -51.93 -0.42 0.84 16 34 H 0.07 0.66 6.99 -51.93 -0.36 0.30 16 35 H 0.07 0.73 5.70 -51.93 -0.30 0.44 16 36 H 0.09 0.86 5.11 -51.93 -0.27 0.59 16 37 H 0.09 0.60 7.39 -51.93 -0.38 0.21 16 38 H 0.08 0.86 7.70 -51.93 -0.40 0.46 16 39 H 0.09 1.20 7.72 -51.93 -0.40 0.80 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.52 7.72 -51.93 -0.40 0.12 16 42 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 43 H 0.08 0.52 7.83 -51.93 -0.41 0.11 16 44 H 0.08 1.79 5.96 -51.92 -0.31 1.48 16 45 H 0.08 1.58 7.82 -51.93 -0.41 1.18 16 46 H 0.09 2.35 6.10 -51.93 -0.32 2.03 16 47 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 360.59 15.07 5.43 5.43 Total: -1.00 -32.23 360.59 -8.21 -40.44 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.18 Total: 1.73 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -0.73 Total: 7.37 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: -0.47 Total: -49.96 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.27 Total: -18.54 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.04 Total: -2.81 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.23 -8.21 -40.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972560612.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.042 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds