Wall clock time and date at job start Fri Apr 10 2020 18:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 119.99709 * 2 1 4 4 H 1.48498 * 109.47483 * 269.99962 * 3 2 1 5 5 H 1.48503 * 109.47037 * 30.00106 * 3 2 1 6 6 H 1.48505 * 109.47511 * 149.99924 * 3 2 1 7 7 C 1.38809 * 120.00554 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00535 * 182.79672 * 7 2 1 9 9 N 1.36939 * 119.99909 * 2.79064 * 7 2 1 10 10 C 1.47164 * 121.06616 * 145.55993 * 9 7 2 11 11 C 1.53277 * 108.55111 * 128.89341 * 10 9 7 12 12 O 1.43102 * 109.23009 * 52.89107 * 11 10 9 13 13 C 1.42062 * 114.33313 * 298.85732 * 12 11 10 14 14 C 1.54494 * 110.38368 * 182.83071 * 13 12 11 15 15 C 1.55277 * 101.42456 * 83.74013 * 14 13 12 16 16 N 1.47492 * 104.77159 * 36.69421 * 15 14 13 17 17 C 1.34774 * 125.66074 * 155.88336 * 16 15 14 18 18 O 1.21283 * 120.00037 * 185.40903 * 17 16 15 19 19 C 1.50701 * 120.00228 * 5.41448 * 17 16 15 20 20 C 1.53006 * 112.90410 * 284.53928 * 19 17 16 21 21 F 1.39906 * 109.47021 * 316.17577 * 20 19 17 22 22 C 1.53780 * 113.61841 * 55.78707 * 19 17 16 23 23 C 1.53783 * 87.17032 * 89.16387 * 22 19 17 24 24 C 1.53774 * 87.08082 * 25.39159 * 23 22 19 25 25 C 1.47178 * 108.67468 * 335.61857 * 16 15 14 26 26 C 1.47310 * 121.06861 * 325.58459 * 9 7 2 27 27 H 0.96996 * 120.00407 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.62566 * 248.60935 * 10 9 7 29 29 H 1.08997 * 109.62445 * 8.98541 * 10 9 7 30 30 H 1.08998 * 109.51242 * 172.82183 * 11 10 9 31 31 H 1.08999 * 109.51020 * 292.97077 * 11 10 9 32 32 H 1.09003 * 111.00919 * 201.99626 * 14 13 12 33 33 H 1.08997 * 111.01096 * 325.83350 * 14 13 12 34 34 H 1.08988 * 110.50631 * 277.83549 * 15 14 13 35 35 H 1.08997 * 110.32543 * 155.45795 * 15 14 13 36 36 H 1.08998 * 109.46871 * 76.16953 * 20 19 17 37 37 H 1.08992 * 109.47210 * 196.17376 * 20 19 17 38 38 H 1.09002 * 113.61168 * 334.57004 * 22 19 17 39 39 H 1.09000 * 113.61590 * 203.75446 * 22 19 17 40 40 H 1.09000 * 113.61527 * 139.94398 * 23 22 19 41 41 H 1.09008 * 113.60845 * 270.84220 * 23 22 19 42 42 H 1.08999 * 113.61436 * 89.11929 * 24 23 22 43 43 H 1.09010 * 113.61440 * 219.93381 * 24 23 22 44 44 H 1.09004 * 109.90736 * 121.14886 * 25 16 15 45 45 H 1.08997 * 109.90964 * 242.22068 * 25 16 15 46 46 H 1.08996 * 109.67911 * 109.64609 * 26 9 7 47 47 H 1.09001 * 109.70733 * 349.11579 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4474 2.6526 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0894 -1.2026 0.0451 9 7 1.3269 -2.3873 -0.0588 10 6 1.8778 -3.5470 -0.7781 11 6 1.8374 -4.7631 0.1539 12 8 0.5104 -4.9206 0.6659 13 6 0.0435 -3.8184 1.4309 14 6 -1.3640 -4.1131 1.9957 15 6 -1.0186 -4.9187 3.2774 16 7 0.2074 -4.2867 3.7999 17 6 0.6226 -4.3182 5.0817 18 8 1.5974 -3.6803 5.4192 19 6 -0.1242 -5.1461 6.0956 20 6 -1.4447 -4.5070 6.5300 21 9 -1.2489 -3.1404 6.7569 22 6 -0.2561 -6.6275 5.7045 23 6 1.0822 -6.8584 6.4259 24 6 0.7505 -5.6176 7.2715 25 6 0.9052 -3.6213 2.6879 26 6 0.0165 -2.5423 0.5960 27 1 -0.4850 0.8400 -0.0004 28 1 1.2776 -3.7461 -1.6659 29 1 2.9073 -3.3408 -1.0710 30 1 2.1219 -5.6569 -0.4013 31 1 2.5309 -4.6112 0.9810 32 1 -1.8886 -3.1892 2.2395 33 1 -1.9454 -4.7183 1.3002 34 1 -0.8313 -5.9641 3.0324 35 1 -1.8264 -4.8377 4.0047 36 1 -2.1891 -4.6420 5.7453 37 1 -1.7935 -4.9813 7.4472 38 1 -0.2084 -6.8011 4.6294 39 1 -1.0996 -7.1305 6.1774 40 1 1.1140 -7.7834 7.0016 41 1 1.9528 -6.7286 5.7829 42 1 0.1820 -5.8434 8.1737 43 1 1.6112 -4.9767 7.4629 44 1 1.0133 -2.5578 2.9009 45 1 1.8869 -4.0723 2.5429 46 1 -0.7653 -2.6146 -0.1600 47 1 -0.1754 -1.6853 1.2417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972560615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:02 Heat of formation + Delta-G solvation = -93.324856 kcal Electronic energy + Delta-G solvation = -30326.923618 eV Core-core repulsion = 26231.991804 eV Total energy + Delta-G solvation = -4094.931814 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.65651 -41.99869 -40.74784 -38.52291 -37.55550 -36.28529 -33.36439 -33.07063 -30.63690 -30.28431 -29.23089 -27.72065 -26.59663 -25.40711 -24.91819 -23.99373 -22.69346 -22.03304 -20.35093 -19.72661 -18.91367 -17.97615 -17.82440 -17.31443 -17.12540 -16.89505 -16.66267 -16.20136 -16.08564 -15.90880 -15.81162 -15.37066 -15.07964 -15.06821 -14.65339 -14.50075 -13.99749 -13.56617 -13.51642 -13.38882 -13.29396 -13.18534 -13.01918 -12.90729 -12.77806 -12.48247 -12.38028 -12.18429 -12.15866 -12.08799 -11.87949 -11.75214 -11.32703 -11.23981 -11.16804 -10.89140 -10.71307 -10.57555 -9.75834 -8.64162 -7.95601 -5.50923 1.40593 1.41549 1.46561 1.49897 1.82232 2.41390 2.73980 3.17601 3.20845 3.26985 3.42227 3.51890 3.53714 3.68356 3.77902 3.85973 3.94889 4.07220 4.17874 4.24615 4.27686 4.34922 4.35126 4.48671 4.54492 4.59819 4.70444 4.73690 4.76903 4.79364 4.83879 4.90458 4.96777 5.02912 5.04331 5.08540 5.11632 5.17132 5.20709 5.23695 5.42076 5.54547 5.57475 6.27894 6.35910 6.46252 7.03226 7.06186 7.70441 8.26835 9.08767 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015194 B = 0.004187 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.361174 B = 6686.361018 C = 7415.060282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.038 4.038 3 Si 0.964 3.036 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.269 4.269 8 H 0.062 0.938 9 N -0.617 5.617 10 C 0.106 3.894 11 C 0.050 3.950 12 O -0.368 6.368 13 C 0.093 3.907 14 C -0.114 4.114 15 C 0.104 3.896 16 N -0.611 5.611 17 C 0.543 3.457 18 O -0.592 6.592 19 C -0.146 4.146 20 C 0.072 3.928 21 F -0.241 7.241 22 C -0.106 4.106 23 C -0.140 4.140 24 C -0.118 4.118 25 C 0.110 3.890 26 C 0.173 3.827 27 H 0.253 0.747 28 H 0.027 0.973 29 H 0.067 0.933 30 H 0.126 0.874 31 H 0.037 0.963 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.129 0.871 38 H 0.078 0.922 39 H 0.140 0.860 40 H 0.104 0.896 41 H 0.050 0.950 42 H 0.127 0.873 43 H 0.046 0.954 44 H 0.034 0.966 45 H 0.051 0.949 46 H 0.011 0.989 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.992 -19.016 11.399 23.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.234 4.234 3 Si 0.791 3.209 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.399 4.399 8 H 0.080 0.920 9 N -0.342 5.342 10 C -0.020 4.020 11 C -0.027 4.027 12 O -0.287 6.287 13 C 0.051 3.949 14 C -0.152 4.152 15 C -0.017 4.017 16 N -0.344 5.344 17 C 0.333 3.667 18 O -0.472 6.472 19 C -0.149 4.149 20 C 0.017 3.983 21 F -0.222 7.222 22 C -0.143 4.143 23 C -0.178 4.178 24 C -0.156 4.156 25 C -0.013 4.013 26 C 0.047 3.953 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.144 0.856 31 H 0.055 0.945 32 H 0.104 0.896 33 H 0.135 0.865 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.147 0.853 38 H 0.096 0.904 39 H 0.158 0.842 40 H 0.122 0.878 41 H 0.069 0.931 42 H 0.145 0.855 43 H 0.065 0.935 44 H 0.052 0.948 45 H 0.070 0.930 46 H 0.029 0.971 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.649 -18.667 11.605 22.964 hybrid contribution 1.216 2.215 -0.448 2.567 sum -5.433 -16.451 11.158 20.607 Atomic orbital electron populations 1.70031 1.06420 1.25969 1.55018 1.25969 0.96386 1.01237 0.99824 0.85333 0.78040 0.79675 0.77808 1.20419 1.21803 1.19998 1.19387 0.90721 0.84206 1.45580 0.92028 1.44286 1.20369 1.09695 1.59820 1.21776 0.98384 0.87907 0.93908 1.23133 0.83615 0.99484 0.96511 1.87662 1.31760 1.39914 1.69378 1.22466 0.94616 0.88910 0.88932 1.22826 0.93675 1.01841 0.96861 1.22829 0.85735 0.97668 0.95437 1.48637 1.25761 1.53325 1.06635 1.20348 0.83918 0.80854 0.81613 1.90662 1.30726 1.46189 1.79602 1.22763 0.97526 0.97650 0.97007 1.22468 0.95142 0.75346 1.05311 1.92773 1.96561 1.36348 1.96541 1.23117 0.99830 0.88974 1.02349 1.22792 0.97124 0.99030 0.98815 1.23059 0.99040 0.97044 0.96433 1.22085 0.96190 0.96086 0.86951 1.21076 0.86634 0.93672 0.93964 0.93787 0.95504 0.91417 0.85627 0.94485 0.89622 0.86461 0.88279 0.87560 0.87833 0.85335 0.90380 0.84151 0.87767 0.93138 0.85480 0.93511 0.94797 0.93033 0.97119 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.97 10.73 21.65 0.23 -54.73 16 2 C -0.04 -2.16 5.31 84.86 0.45 -1.71 16 3 Si 0.96 46.29 29.55 68.60 2.03 48.32 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 6 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.27 -15.22 9.62 84.03 0.81 -14.41 16 8 H 0.06 3.45 7.83 -2.91 -0.02 3.43 16 9 N -0.62 -31.66 2.97 -698.63 -2.07 -33.73 16 10 C 0.11 4.40 6.72 86.35 0.58 4.98 16 11 C 0.05 1.73 6.76 72.07 0.49 2.21 16 12 O -0.37 -13.14 10.26 -148.97 -1.53 -14.67 16 13 C 0.09 3.53 0.80 -10.22 -0.01 3.52 16 14 C -0.11 -3.22 6.23 31.88 0.20 -3.02 16 15 C 0.10 2.37 5.47 86.97 0.48 2.84 16 16 N -0.61 -20.17 3.30 -811.79 -2.68 -22.85 16 17 C 0.54 18.64 5.96 87.66 0.52 19.16 16 18 O -0.59 -26.96 16.44 -3.04 -0.05 -27.01 16 19 C -0.15 -3.10 0.64 -52.34 -0.03 -3.13 16 20 C 0.07 1.22 6.85 71.98 0.49 1.71 16 21 F -0.24 -7.04 16.80 44.97 0.76 -6.28 16 22 C -0.11 -1.34 6.69 31.12 0.21 -1.14 16 23 C -0.14 -2.28 7.81 31.12 0.24 -2.03 16 24 C -0.12 -2.28 7.13 31.18 0.22 -2.06 16 25 C 0.11 4.56 5.95 86.48 0.51 5.07 16 26 C 0.17 8.39 3.91 86.07 0.34 8.73 16 27 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 28 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 2.70 7.96 -2.39 -0.02 2.68 16 30 H 0.13 3.31 8.14 -2.39 -0.02 3.29 16 31 H 0.04 1.36 6.22 -2.39 -0.01 1.35 16 32 H 0.09 2.54 8.01 -2.39 -0.02 2.53 16 33 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.10 1.83 6.89 -2.39 -0.02 1.81 16 35 H 0.11 1.69 5.60 -2.39 -0.01 1.68 16 36 H 0.10 1.24 6.08 -2.39 -0.01 1.22 16 37 H 0.13 1.10 7.85 -2.39 -0.02 1.08 16 38 H 0.08 1.10 5.84 -2.39 -0.01 1.09 16 39 H 0.14 0.59 8.10 -2.39 -0.02 0.58 16 40 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 42 H 0.13 1.48 7.90 -2.39 -0.02 1.46 16 43 H 0.05 1.27 7.42 -2.38 -0.02 1.26 16 44 H 0.03 1.71 7.61 -2.38 -0.02 1.69 16 45 H 0.05 2.25 6.01 -2.39 -0.01 2.24 16 46 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.07 3.74 5.94 -2.39 -0.01 3.73 16 Total: -1.00 -79.82 359.64 3.16 -76.66 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.98 Total: 13.57 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: 5.50 Total: 20.74 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -4.52 Total: -111.32 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -1.58 Total: -41.67 kcal Atomic # 9 Polarization: -7.04 SS G_CDS: 0.76 Total: -6.28 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -79.82 3.16 -76.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972560615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.666 kcal (2) G-P(sol) polarization free energy of solvation -79.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds