Wall clock time and date at job start Fri Apr 10 2020 18:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 119.99873 * 2 1 4 4 H 1.48504 * 109.46844 * 239.99477 * 3 2 1 5 5 H 1.48500 * 109.47413 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47507 * 119.99520 * 3 2 1 7 7 C 1.38813 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00407 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99702 * 0.02562 * 7 2 1 10 10 C 1.47574 * 125.67485 * 0.03910 * 9 7 2 11 11 C 1.55216 * 105.02367 * 203.79637 * 10 9 7 12 12 C 1.53490 * 101.39201 * 324.66617 * 11 10 9 13 13 C 1.53470 * 111.81695 * 271.73303 * 12 11 10 14 14 C 1.54630 * 102.74643 * 272.83022 * 13 12 11 15 15 N 1.47157 * 107.34126 * 339.33737 * 14 13 12 16 16 C 1.34768 * 125.59927 * 179.12134 * 15 14 13 17 17 O 1.21286 * 119.99914 * 174.97847 * 16 15 14 18 18 C 1.50700 * 120.00366 * 354.98202 * 16 15 14 19 19 F 1.39905 * 109.53896 * 313.47338 * 18 16 15 20 20 C 1.53171 * 109.54573 * 193.20540 * 18 16 15 21 21 C 1.53097 * 109.16499 * 183.14831 * 20 18 16 22 22 O 1.42904 * 109.40997 * 57.60974 * 21 20 18 23 23 C 1.42900 * 114.09977 * 298.84063 * 22 21 20 24 24 C 1.53093 * 109.41532 * 61.16124 * 23 22 21 25 25 C 1.47755 * 108.80025 * 359.08783 * 15 14 13 26 26 C 1.47449 * 125.67423 * 179.97438 * 9 7 2 27 27 H 0.96992 * 120.00130 * 0.02562 * 1 2 3 28 28 H 1.09005 * 110.33137 * 322.68367 * 10 9 7 29 29 H 1.08995 * 110.33465 * 84.80366 * 10 9 7 30 30 H 1.09005 * 111.03920 * 206.64028 * 11 10 9 31 31 H 1.09000 * 111.03955 * 82.69877 * 11 10 9 32 32 H 1.08998 * 110.76054 * 154.51483 * 13 12 11 33 33 H 1.09006 * 110.75512 * 31.14241 * 13 12 11 34 34 H 1.08998 * 109.87079 * 219.89621 * 14 13 12 35 35 H 1.08999 * 109.87335 * 98.77383 * 14 13 12 36 36 H 1.08999 * 109.52579 * 303.05574 * 20 18 16 37 37 H 1.08999 * 109.52588 * 63.24677 * 20 18 16 38 38 H 1.08996 * 109.48137 * 297.63260 * 21 20 18 39 39 H 1.08992 * 109.49184 * 177.59324 * 21 20 18 40 40 H 1.08995 * 109.48411 * 301.17882 * 23 22 21 41 41 H 1.09003 * 109.49443 * 181.14615 * 23 22 21 42 42 H 1.09004 * 109.52675 * 182.48936 * 24 23 22 43 43 H 1.08998 * 109.52100 * 62.29432 * 24 23 22 44 44 H 1.09003 * 110.39768 * 141.14176 * 25 15 14 45 45 H 1.09007 * 110.39391 * 263.42562 * 25 15 14 46 46 H 1.08999 * 109.99391 * 58.48636 * 26 9 7 47 47 H 1.08990 * 110.03322 * 297.16970 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1429 -2.5340 -0.0008 11 6 -0.4083 -3.9384 0.6046 12 6 0.7838 -4.7350 0.0565 13 6 0.4776 -5.3471 -1.3171 14 6 -0.1813 -6.6969 -0.9499 15 7 0.2192 -7.0198 0.4288 16 6 -0.1630 -8.1107 1.1217 17 8 0.3006 -8.3234 2.2221 18 6 -1.1665 -9.0663 0.5293 19 9 -2.2415 -8.3459 -0.0023 20 6 -1.6729 -10.0175 1.6179 21 6 -2.6312 -11.0337 0.9913 22 8 -1.9582 -11.7400 -0.0529 23 6 -1.5039 -10.9074 -1.1218 24 6 -0.5004 -9.8861 -0.5801 25 6 1.1098 -5.9519 0.9285 26 6 1.9330 -3.7317 0.0005 27 1 -0.4850 0.8400 -0.0004 28 1 -0.6008 -1.7622 0.6179 29 1 -0.5280 -2.4800 -1.0190 30 1 -1.3518 -4.3482 0.2439 31 1 -0.3890 -3.9050 1.6939 32 1 1.3958 -5.5066 -1.8824 33 1 -0.2161 -4.7176 -1.8746 34 1 0.1663 -7.4757 -1.6287 35 1 -1.2660 -6.6081 -1.0094 36 1 -0.8284 -10.5413 2.0658 37 1 -2.1972 -9.4473 2.3848 38 1 -3.4953 -10.5125 0.5793 39 1 -2.9617 -11.7397 1.7531 40 1 -2.3532 -10.3845 -1.5614 41 1 -1.0223 -11.5221 -1.8822 42 1 -0.1861 -9.2218 -1.3851 43 1 0.3678 -10.4072 -0.1766 44 1 0.8955 -5.7374 1.9755 45 1 2.1540 -6.2401 0.8065 46 1 2.5743 -3.8507 0.8738 47 1 2.5128 -3.8793 -0.9104 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041350963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:39 Heat of formation + Delta-G solvation = -94.831163 kcal Electronic energy + Delta-G solvation = -29510.949012 eV Core-core repulsion = 25415.951879 eV Total energy + Delta-G solvation = -4094.997132 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.28946 -40.46046 -39.32382 -38.34470 -35.80736 -33.52358 -32.70564 -31.66325 -30.51257 -29.29031 -28.70978 -26.74210 -25.24956 -24.19102 -23.60142 -22.84519 -20.93706 -20.29408 -19.76799 -18.93161 -17.45659 -17.06241 -16.82591 -16.48224 -16.21910 -15.88607 -15.56355 -15.44470 -14.87420 -14.75553 -14.34728 -13.97505 -13.68413 -13.48080 -13.15811 -12.97072 -12.93501 -12.84109 -12.75212 -12.64533 -12.38761 -11.85556 -11.81267 -11.56794 -11.31932 -11.18435 -11.06299 -10.97548 -10.92510 -10.76062 -10.31332 -10.25324 -10.10852 -10.01801 -9.77443 -9.70590 -9.52669 -8.69115 -8.66567 -6.86381 -5.67348 -3.09059 2.25139 2.69008 3.39217 3.43403 3.43621 3.44773 3.84374 3.92152 4.08315 4.33058 4.43072 4.46569 4.63815 4.73993 4.78138 4.91763 4.92938 5.05305 5.11694 5.22738 5.24474 5.27788 5.34722 5.44011 5.47638 5.57093 5.60951 5.75437 5.75800 5.83148 5.88737 5.92895 6.03866 6.15300 6.24222 6.30108 6.51181 6.59247 6.71152 6.73386 6.79100 7.34657 7.47758 7.59645 7.83274 7.85088 8.33295 9.19510 9.80116 10.45098 11.36605 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.035567 B = 0.002673 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.058783 B =10473.247847 C =10530.130475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.155 3.845 11 C -0.129 4.129 12 C -0.081 4.081 13 C -0.112 4.112 14 C 0.093 3.907 15 N -0.602 5.602 16 C 0.515 3.485 17 O -0.527 6.527 18 C 0.112 3.888 19 F -0.189 7.189 20 C -0.160 4.160 21 C 0.060 3.940 22 O -0.380 6.380 23 C 0.063 3.937 24 C -0.177 4.177 25 C 0.123 3.877 26 C 0.153 3.847 27 H 0.253 0.747 28 H 0.105 0.895 29 H 0.013 0.987 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.104 0.896 40 H 0.061 0.939 41 H 0.104 0.896 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.080 0.920 45 H 0.070 0.930 46 H 0.027 0.973 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.601 -21.732 -2.710 22.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.030 3.970 11 C -0.168 4.168 12 C -0.083 4.083 13 C -0.150 4.150 14 C -0.029 4.029 15 N -0.335 5.335 16 C 0.300 3.700 17 O -0.404 6.404 18 C 0.090 3.910 19 F -0.170 7.170 20 C -0.198 4.198 21 C -0.016 4.016 22 O -0.298 6.298 23 C -0.014 4.014 24 C -0.215 4.215 25 C 0.001 3.999 26 C 0.026 3.974 27 H 0.063 0.937 28 H 0.123 0.877 29 H 0.031 0.969 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.122 0.878 40 H 0.079 0.921 41 H 0.122 0.878 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.098 0.902 45 H 0.088 0.912 46 H 0.045 0.955 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -4.416 -21.840 -2.096 22.381 hybrid contribution 0.417 1.327 -0.160 1.400 sum -3.999 -20.513 -2.256 21.021 Atomic orbital electron populations 1.69787 1.04891 1.24918 1.57502 1.24781 0.95723 0.97708 1.02395 0.86153 0.78402 0.83037 0.77892 1.21228 1.21580 1.21155 1.19029 0.90476 0.82416 1.43247 0.90526 1.44606 1.01873 0.99518 1.86944 1.21976 0.84562 0.92255 0.98167 1.22826 0.95181 0.98685 1.00091 1.21559 0.98798 0.93769 0.94129 1.22477 1.01404 0.93927 0.97211 1.22436 1.00798 0.97827 0.81859 1.48590 1.47876 1.21566 1.15460 1.20274 0.82995 0.81350 0.85335 1.90733 1.56429 1.73478 1.19751 1.21120 0.84008 0.90566 0.95303 1.92887 1.56967 1.79431 1.87696 1.22595 1.02392 0.97551 0.97291 1.22637 0.93742 0.94951 0.90307 1.87954 1.75861 1.34167 1.31820 1.22563 0.96458 0.92731 0.89616 1.22870 1.00757 0.99345 0.98576 1.22152 0.93290 0.85322 0.99144 1.20963 0.92694 0.85508 0.98196 0.93671 0.87748 0.96942 0.92287 0.92041 0.90493 0.89260 0.91563 0.90284 0.88045 0.88975 0.92271 0.87767 0.92109 0.87799 0.88753 0.88549 0.90169 0.91200 0.95505 0.95573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.59 10.10 55.49 0.56 -26.03 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.22 -6.13 10.28 -15.06 -0.15 -6.28 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -15.04 3.41 -170.44 -0.58 -15.62 16 10 C 0.16 3.66 5.82 -2.28 -0.01 3.65 16 11 C -0.13 -2.41 5.97 -25.30 -0.15 -2.56 16 12 C -0.08 -1.34 0.62 -154.08 -0.10 -1.43 16 13 C -0.11 -1.53 5.81 -25.63 -0.15 -1.67 16 14 C 0.09 1.09 5.78 -2.83 -0.02 1.07 16 15 N -0.60 -8.27 3.34 -171.00 -0.57 -8.84 16 16 C 0.52 7.24 6.86 -10.99 -0.08 7.16 16 17 O -0.53 -8.96 16.25 5.55 0.09 -8.87 16 18 C 0.11 1.22 0.77 -91.59 -0.07 1.15 16 19 F -0.19 -2.19 14.07 2.25 0.03 -2.16 16 20 C -0.16 -1.58 4.65 -26.59 -0.12 -1.70 16 21 C 0.06 0.50 6.72 37.21 0.25 0.75 16 22 O -0.38 -3.56 10.77 -35.23 -0.38 -3.94 16 23 C 0.06 0.48 6.72 37.21 0.25 0.73 16 24 C -0.18 -1.52 5.09 -26.59 -0.14 -1.65 16 25 C 0.12 1.86 5.78 -3.24 -0.02 1.84 16 26 C 0.15 3.04 6.51 -3.70 -0.02 3.02 16 27 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 28 H 0.10 2.82 5.89 -51.93 -0.31 2.52 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 1.01 7.97 -51.93 -0.41 0.59 16 31 H 0.06 1.18 7.86 -51.93 -0.41 0.77 16 32 H 0.08 0.97 7.78 -51.93 -0.40 0.56 16 33 H 0.09 1.27 7.96 -51.93 -0.41 0.86 16 34 H 0.07 0.62 6.15 -51.93 -0.32 0.30 16 35 H 0.08 0.93 6.80 -51.93 -0.35 0.57 16 36 H 0.10 1.05 7.86 -51.93 -0.41 0.64 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.47 7.93 -51.93 -0.41 0.06 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.45 7.93 -51.93 -0.41 0.03 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 0.71 5.74 -51.93 -0.30 0.42 16 43 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.08 1.32 7.79 -51.93 -0.40 0.92 16 45 H 0.07 1.00 8.08 -51.92 -0.42 0.58 16 46 H 0.03 0.54 7.89 -51.93 -0.41 0.13 16 47 H 0.03 0.51 7.60 -51.93 -0.39 0.12 16 LS Contribution 359.77 15.07 5.42 5.42 Total: -1.00 -31.62 359.77 -8.51 -40.13 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -7.44 Total: -0.61 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -0.62 Total: 3.67 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.59 Total: -50.49 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.29 Total: -12.81 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.03 Total: -2.16 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.62 -8.51 -40.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041350963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.703 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds