Wall clock time and date at job start Fri Apr 10 2020 18:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 119.99873 * 2 1 4 4 H 1.48504 * 109.46844 * 239.99477 * 3 2 1 5 5 H 1.48500 * 109.47413 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47507 * 119.99520 * 3 2 1 7 7 C 1.38813 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00407 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99702 * 0.02562 * 7 2 1 10 10 C 1.47574 * 125.67485 * 0.03910 * 9 7 2 11 11 C 1.55216 * 105.02367 * 203.79637 * 10 9 7 12 12 C 1.53490 * 101.39201 * 324.66617 * 11 10 9 13 13 C 1.53470 * 111.81695 * 271.73303 * 12 11 10 14 14 C 1.54630 * 102.74643 * 272.83022 * 13 12 11 15 15 N 1.47157 * 107.34126 * 339.33737 * 14 13 12 16 16 C 1.34768 * 125.59927 * 179.12134 * 15 14 13 17 17 O 1.21286 * 119.99914 * 174.97847 * 16 15 14 18 18 C 1.50700 * 120.00366 * 354.98202 * 16 15 14 19 19 F 1.39905 * 109.53896 * 313.47338 * 18 16 15 20 20 C 1.53171 * 109.54573 * 193.20540 * 18 16 15 21 21 C 1.53097 * 109.16499 * 183.14831 * 20 18 16 22 22 O 1.42904 * 109.40997 * 57.60974 * 21 20 18 23 23 C 1.42900 * 114.09977 * 298.84063 * 22 21 20 24 24 C 1.53093 * 109.41532 * 61.16124 * 23 22 21 25 25 C 1.47755 * 108.80025 * 359.08783 * 15 14 13 26 26 C 1.47449 * 125.67423 * 179.97438 * 9 7 2 27 27 H 0.96992 * 120.00130 * 0.02562 * 1 2 3 28 28 H 1.09005 * 110.33137 * 322.68367 * 10 9 7 29 29 H 1.08995 * 110.33465 * 84.80366 * 10 9 7 30 30 H 1.09005 * 111.03920 * 206.64028 * 11 10 9 31 31 H 1.09000 * 111.03955 * 82.69877 * 11 10 9 32 32 H 1.08998 * 110.76054 * 154.51483 * 13 12 11 33 33 H 1.09006 * 110.75512 * 31.14241 * 13 12 11 34 34 H 1.08998 * 109.87079 * 219.89621 * 14 13 12 35 35 H 1.08999 * 109.87335 * 98.77383 * 14 13 12 36 36 H 1.08999 * 109.52579 * 303.05574 * 20 18 16 37 37 H 1.08999 * 109.52588 * 63.24677 * 20 18 16 38 38 H 1.08996 * 109.48137 * 297.63260 * 21 20 18 39 39 H 1.08992 * 109.49184 * 177.59324 * 21 20 18 40 40 H 1.08995 * 109.48411 * 301.17882 * 23 22 21 41 41 H 1.09003 * 109.49443 * 181.14615 * 23 22 21 42 42 H 1.09004 * 109.52675 * 182.48936 * 24 23 22 43 43 H 1.08998 * 109.52100 * 62.29432 * 24 23 22 44 44 H 1.09003 * 110.39768 * 141.14176 * 25 15 14 45 45 H 1.09007 * 110.39391 * 263.42562 * 25 15 14 46 46 H 1.08999 * 109.99391 * 58.48636 * 26 9 7 47 47 H 1.08990 * 110.03322 * 297.16970 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1429 -2.5340 -0.0008 11 6 -0.4083 -3.9384 0.6046 12 6 0.7838 -4.7350 0.0565 13 6 0.4776 -5.3471 -1.3171 14 6 -0.1813 -6.6969 -0.9499 15 7 0.2192 -7.0198 0.4288 16 6 -0.1630 -8.1107 1.1217 17 8 0.3006 -8.3234 2.2221 18 6 -1.1665 -9.0663 0.5293 19 9 -2.2415 -8.3459 -0.0023 20 6 -1.6729 -10.0175 1.6179 21 6 -2.6312 -11.0337 0.9913 22 8 -1.9582 -11.7400 -0.0529 23 6 -1.5039 -10.9074 -1.1218 24 6 -0.5004 -9.8861 -0.5801 25 6 1.1098 -5.9519 0.9285 26 6 1.9330 -3.7317 0.0005 27 1 -0.4850 0.8400 -0.0004 28 1 -0.6008 -1.7622 0.6179 29 1 -0.5280 -2.4800 -1.0190 30 1 -1.3518 -4.3482 0.2439 31 1 -0.3890 -3.9050 1.6939 32 1 1.3958 -5.5066 -1.8824 33 1 -0.2161 -4.7176 -1.8746 34 1 0.1663 -7.4757 -1.6287 35 1 -1.2660 -6.6081 -1.0094 36 1 -0.8284 -10.5413 2.0658 37 1 -2.1972 -9.4473 2.3848 38 1 -3.4953 -10.5125 0.5793 39 1 -2.9617 -11.7397 1.7531 40 1 -2.3532 -10.3845 -1.5614 41 1 -1.0223 -11.5221 -1.8822 42 1 -0.1861 -9.2218 -1.3851 43 1 0.3678 -10.4072 -0.1766 44 1 0.8955 -5.7374 1.9755 45 1 2.1540 -6.2401 0.8065 46 1 2.5743 -3.8507 0.8738 47 1 2.5128 -3.8793 -0.9104 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041350963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:38 Heat of formation + Delta-G solvation = -114.646944 kcal Electronic energy + Delta-G solvation = -29511.808288 eV Core-core repulsion = 25415.951879 eV Total energy + Delta-G solvation = -4095.856409 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.16427 -41.63502 -40.28581 -39.39169 -37.31849 -34.64298 -34.14526 -32.40487 -32.00485 -30.66544 -30.27815 -27.95005 -26.72828 -25.13271 -24.77737 -24.02898 -22.16793 -21.73562 -20.74742 -20.26541 -18.92749 -18.38300 -17.84805 -17.37155 -16.99497 -16.91325 -16.80191 -16.47918 -16.18599 -15.86288 -15.70632 -15.49379 -14.91015 -14.60854 -14.37184 -14.28497 -14.08910 -13.74048 -13.68460 -13.60045 -13.51295 -13.45571 -13.05718 -12.96181 -12.72281 -12.59313 -12.54960 -12.38664 -12.06451 -11.85052 -11.80056 -11.66976 -11.63785 -11.45364 -11.21380 -11.06286 -10.73040 -10.55687 -9.80446 -8.88289 -7.77070 -5.20877 1.18567 1.46840 1.49688 1.55955 1.64193 2.49925 2.81614 2.97186 3.16126 3.23763 3.33031 3.46464 3.49616 3.59312 3.65866 3.78568 3.80024 4.11476 4.17931 4.24186 4.24787 4.29835 4.43620 4.44434 4.56183 4.57024 4.60244 4.67416 4.70019 4.74580 4.84683 4.85391 4.89893 4.93433 4.98618 5.02068 5.06857 5.17295 5.22767 5.31844 5.47329 5.62111 5.81738 6.13885 6.27022 6.30706 6.76462 7.10883 7.78140 8.42318 9.24825 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.035567 B = 0.002673 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.058783 B =10473.247847 C =10530.130475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.067 4.067 3 Si 0.979 3.021 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.279 1.279 7 C -0.238 4.238 8 H 0.081 0.919 9 N -0.625 5.625 10 C 0.161 3.839 11 C -0.114 4.114 12 C -0.072 4.072 13 C -0.108 4.108 14 C 0.098 3.902 15 N -0.603 5.603 16 C 0.510 3.490 17 O -0.563 6.563 18 C 0.114 3.886 19 F -0.192 7.192 20 C -0.160 4.160 21 C 0.064 3.936 22 O -0.393 6.393 23 C 0.061 3.939 24 C -0.172 4.172 25 C 0.129 3.871 26 C 0.149 3.851 27 H 0.246 0.754 28 H 0.066 0.934 29 H -0.005 1.005 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.121 0.879 40 H 0.066 0.934 41 H 0.126 0.874 42 H 0.109 0.891 43 H 0.095 0.905 44 H 0.061 0.939 45 H 0.082 0.918 46 H 0.026 0.974 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.270 -23.715 -4.097 24.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.807 3.193 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.205 1.205 7 C -0.367 4.367 8 H 0.099 0.901 9 N -0.352 5.352 10 C 0.036 3.964 11 C -0.152 4.152 12 C -0.073 4.073 13 C -0.145 4.145 14 C -0.024 4.024 15 N -0.335 5.335 16 C 0.297 3.703 17 O -0.442 6.442 18 C 0.092 3.908 19 F -0.172 7.172 20 C -0.198 4.198 21 C -0.013 4.013 22 O -0.312 6.312 23 C -0.015 4.015 24 C -0.210 4.210 25 C 0.006 3.994 26 C 0.024 3.976 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.013 0.987 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.139 0.861 40 H 0.084 0.916 41 H 0.144 0.856 42 H 0.127 0.873 43 H 0.114 0.886 44 H 0.080 0.920 45 H 0.100 0.900 46 H 0.044 0.956 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.076 -23.853 -3.505 24.451 hybrid contribution 0.339 1.954 0.298 2.005 sum -3.738 -21.899 -3.207 22.446 Atomic orbital electron populations 1.70048 1.06188 1.25043 1.58630 1.25610 0.96607 1.00925 1.02809 0.85142 0.77111 0.78846 0.78163 1.20285 1.22079 1.20507 1.19420 0.91037 0.83739 1.42506 0.90077 1.44893 1.02606 1.00782 1.86901 1.21703 0.84058 0.93997 0.96641 1.22615 0.97210 0.96195 0.99198 1.21392 0.96132 0.93321 0.96502 1.22463 1.02299 0.94505 0.95255 1.22538 1.00966 0.97687 0.81169 1.48652 1.47509 1.21076 1.16253 1.20890 0.83048 0.81472 0.84883 1.90714 1.57819 1.74373 1.21343 1.21161 0.83278 0.89872 0.96446 1.92884 1.57010 1.79610 1.87709 1.22607 1.02484 0.97670 0.97058 1.22694 0.93144 0.94885 0.90561 1.87944 1.75992 1.34956 1.32316 1.22737 0.96505 0.92766 0.89505 1.22900 1.00778 0.99423 0.97938 1.21945 0.94347 0.85296 0.97791 1.21132 0.93894 0.84113 0.98454 0.94393 0.91622 0.98679 0.90384 0.93093 0.88806 0.89863 0.88131 0.89884 0.88803 0.89635 0.91827 0.86101 0.91586 0.85574 0.87313 0.88616 0.92013 0.89986 0.95637 0.94419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.43 10.10 21.65 0.22 -56.21 16 2 C -0.07 -3.79 5.49 84.86 0.47 -3.32 16 3 Si 0.98 45.49 29.55 68.60 2.03 47.52 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.24 -13.22 10.28 84.03 0.86 -12.36 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 9 N -0.63 -31.63 3.41 -693.15 -2.37 -34.00 16 10 C 0.16 7.81 5.82 86.93 0.51 8.32 16 11 C -0.11 -4.24 5.97 31.52 0.19 -4.05 16 12 C -0.07 -2.29 0.62 -51.90 -0.03 -2.32 16 13 C -0.11 -2.64 5.81 31.31 0.18 -2.46 16 14 C 0.10 1.96 5.78 86.81 0.50 2.47 16 15 N -0.60 -15.29 3.34 -813.31 -2.72 -18.00 16 16 C 0.51 13.58 6.86 87.66 0.60 14.18 16 17 O -0.56 -18.91 16.25 -3.05 -0.05 -18.96 16 18 C 0.11 2.26 0.77 -11.42 -0.01 2.25 16 19 F -0.19 -3.97 14.07 44.97 0.63 -3.34 16 20 C -0.16 -2.95 4.65 30.68 0.14 -2.81 16 21 C 0.06 0.92 6.72 72.01 0.48 1.40 16 22 O -0.39 -6.37 10.77 -148.98 -1.60 -7.97 16 23 C 0.06 0.73 6.72 72.01 0.48 1.22 16 24 C -0.17 -2.42 5.09 30.69 0.16 -2.27 16 25 C 0.13 3.73 5.78 86.21 0.50 4.23 16 26 C 0.15 5.85 6.51 86.08 0.56 6.41 16 27 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 28 H 0.07 3.72 5.89 -2.38 -0.01 3.70 16 29 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.08 2.60 7.97 -2.38 -0.02 2.58 16 31 H 0.05 1.99 7.86 -2.39 -0.02 1.97 16 32 H 0.09 2.03 7.78 -2.39 -0.02 2.01 16 33 H 0.08 2.20 7.96 -2.38 -0.02 2.18 16 34 H 0.10 1.40 6.15 -2.39 -0.01 1.38 16 35 H 0.08 1.67 6.80 -2.39 -0.02 1.65 16 36 H 0.09 1.87 7.86 -2.39 -0.02 1.85 16 37 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.06 0.86 7.93 -2.39 -0.02 0.84 16 39 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 0.74 7.93 -2.39 -0.02 0.72 16 41 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.11 1.19 5.74 -2.39 -0.01 1.17 16 43 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.06 2.03 7.79 -2.39 -0.02 2.01 16 45 H 0.08 2.20 8.08 -2.38 -0.02 2.18 16 46 H 0.03 1.01 7.89 -2.39 -0.02 0.99 16 47 H 0.04 1.41 7.60 -2.39 -0.02 1.39 16 Total: -1.00 -69.98 359.77 2.70 -67.28 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.96 Total: 12.80 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 5.59 Total: 10.89 kcal Atomic # 7 Polarization: -103.35 SS G_CDS: -4.86 Total: -108.22 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -1.65 Total: -26.93 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.63 Total: -3.34 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -69.98 2.70 -67.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041350963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.368 kcal (2) G-P(sol) polarization free energy of solvation -69.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds