Wall clock time and date at job start Fri Apr 10 2020 18:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99727 * 2 1 4 4 H 1.48501 * 109.47429 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47033 * 119.99940 * 3 2 1 6 6 H 1.48503 * 109.47141 * 239.99972 * 3 2 1 7 7 C 1.38806 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99856 * 152.30757 * 7 2 1 9 9 N 1.36940 * 120.00277 * 332.30499 * 7 2 1 10 10 C 1.47460 * 125.66242 * 343.32166 * 9 7 2 11 11 C 1.55253 * 105.05516 * 200.93921 * 10 9 7 12 12 C 1.54528 * 100.54079 * 323.80244 * 11 10 9 13 13 H 1.09006 * 107.30956 * 284.34182 * 12 11 10 14 14 C 1.49431 * 112.97979 * 165.81869 * 12 11 10 15 15 C 1.49827 * 114.87943 * 284.04991 * 14 12 11 16 16 N 1.44761 * 111.60465 * 317.36966 * 15 14 12 17 17 C 1.34772 * 117.18380 * 213.55067 * 16 15 14 18 18 O 1.21288 * 119.99990 * 176.24809 * 17 16 15 19 19 C 1.50701 * 120.00374 * 356.25049 * 17 16 15 20 20 F 1.39895 * 109.54271 * 57.36297 * 19 17 16 21 21 C 1.53175 * 109.54653 * 297.18507 * 19 17 16 22 22 C 1.53098 * 109.16098 * 183.23723 * 21 19 17 23 23 O 1.42909 * 109.48487 * 57.47744 * 22 21 19 24 24 C 1.42897 * 114.09676 * 298.88857 * 23 22 21 25 25 C 1.53095 * 109.41925 * 61.15722 * 24 23 22 26 26 C 1.43783 * 125.62540 * 33.53054 * 16 15 14 27 27 C 1.48288 * 125.66171 * 163.01123 * 9 7 2 28 28 H 1.09003 * 109.25294 * 301.36877 * 27 9 7 29 29 H 0.97002 * 120.00149 * 176.59511 * 1 2 3 30 30 H 1.09005 * 110.32886 * 319.83029 * 10 9 7 31 31 H 1.08997 * 110.32838 * 82.04284 * 10 9 7 32 32 H 1.08994 * 111.20099 * 81.62093 * 11 10 9 33 33 H 1.09001 * 111.20173 * 205.98281 * 11 10 9 34 34 H 1.09005 * 108.56149 * 45.36655 * 14 12 11 35 35 H 1.08997 * 108.56483 * 162.97725 * 14 12 11 36 36 H 1.09004 * 109.26574 * 196.70540 * 15 14 12 37 37 H 1.08992 * 108.90008 * 77.79299 * 15 14 12 38 38 H 1.09005 * 109.52199 * 303.06058 * 21 19 17 39 39 H 1.09005 * 109.51610 * 63.24399 * 21 19 17 40 40 H 1.08992 * 109.40943 * 297.49639 * 22 21 19 41 41 H 1.09005 * 109.48519 * 177.50075 * 22 21 19 42 42 H 1.08995 * 109.48236 * 301.17421 * 24 23 22 43 43 H 1.09008 * 109.49025 * 181.14264 * 24 23 22 44 44 H 1.08991 * 109.52555 * 182.48272 * 25 24 23 45 45 H 1.09005 * 109.57417 * 62.32528 * 25 24 23 46 46 H 1.08991 * 108.05851 * 215.54795 * 26 16 15 47 47 H 1.08999 * 108.05378 * 99.05325 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1038 1.6964 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 2.9975 -1.2558 -0.4341 9 7 1.4432 -2.3199 0.5522 10 6 0.2887 -2.3348 1.4694 11 6 0.3782 -3.6973 2.2083 12 6 0.9048 -4.6015 1.0711 13 1 0.0687 -4.7990 0.4002 14 6 1.4142 -5.9181 1.5611 15 6 2.7579 -5.8678 2.2218 16 7 3.6773 -5.0172 1.4960 17 6 4.9775 -5.3719 1.4992 18 8 5.7814 -4.7350 0.8519 19 6 5.4325 -6.5599 2.3071 20 9 4.7272 -7.6985 1.9029 21 6 5.1739 -6.2980 3.7940 22 6 5.7125 -7.4743 4.6125 23 8 7.1051 -7.6459 4.3413 24 6 7.4013 -7.9412 2.9749 25 6 6.9325 -6.7827 2.0906 26 6 3.3228 -3.8268 0.7716 27 6 1.8843 -3.7167 0.3213 28 1 1.8307 -3.9390 -0.7445 29 1 -0.4850 -0.8386 -0.0499 30 1 0.3601 -1.5126 2.1815 31 1 -0.6426 -2.2696 0.9069 32 1 1.0866 -3.6514 3.0354 33 1 -0.6033 -4.0255 2.5503 34 1 0.6975 -6.3233 2.2755 35 1 1.4793 -6.6017 0.7147 36 1 3.1711 -6.8751 2.2737 37 1 2.6394 -5.4811 3.2339 38 1 5.6822 -5.3823 4.0963 39 1 4.1023 -6.1941 3.9644 40 1 5.1745 -8.3820 4.3395 41 1 5.5712 -7.2732 5.6745 42 1 6.8853 -8.8550 2.6804 43 1 8.4764 -8.0765 2.8568 44 1 7.1175 -7.0251 1.0442 45 1 7.4773 -5.8768 2.3564 46 1 3.9589 -3.7666 -0.1113 47 1 3.5456 -2.9675 1.4041 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042088676.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:45 Heat of formation + Delta-G solvation = -87.706773 kcal Electronic energy + Delta-G solvation = -30266.931839 eV Core-core repulsion = 26172.243643 eV Total energy + Delta-G solvation = -4094.688196 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -48.51186 -40.58884 -39.21434 -38.34253 -35.79812 -33.50558 -33.37823 -31.77688 -31.53051 -29.72688 -28.46624 -26.51832 -24.67959 -24.22534 -23.81319 -22.86040 -21.22412 -20.43426 -19.95312 -18.04646 -17.64305 -17.43409 -16.99083 -16.47699 -16.33501 -15.74177 -15.53218 -15.37243 -15.03028 -14.67217 -14.51421 -14.42677 -13.88063 -13.58983 -13.15722 -13.10120 -12.98197 -12.86033 -12.76267 -12.62771 -12.31435 -12.24952 -11.79448 -11.44472 -11.38805 -11.32688 -10.97325 -10.84442 -10.68315 -10.50064 -10.23174 -10.13425 -10.02234 -10.00362 -9.96010 -9.55191 -9.51533 -8.43450 -8.37035 -7.01574 -6.13460 -3.17743 2.38135 2.92860 3.49354 3.50556 3.53905 3.71498 3.89238 3.97650 4.15549 4.38947 4.49335 4.52784 4.79742 4.83214 4.86309 4.92827 4.98395 5.10733 5.16304 5.17294 5.29024 5.30489 5.33839 5.43555 5.47645 5.57073 5.65728 5.67277 5.71213 5.82971 5.85394 5.89494 5.97995 6.05568 6.27423 6.32924 6.41514 6.60171 6.78704 6.79623 6.88163 6.95335 7.02226 7.36372 7.75248 8.08283 8.46742 8.97393 9.78573 10.30912 11.20742 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019137 B = 0.003671 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.776286 B = 7626.454323 C = 8398.982448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.023 4.023 3 Si 1.066 2.934 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.340 4.340 8 H 0.066 0.934 9 N -0.595 5.595 10 C 0.143 3.857 11 C -0.130 4.130 12 C -0.092 4.092 13 H 0.068 0.932 14 C -0.111 4.111 15 C 0.084 3.916 16 N -0.574 5.574 17 C 0.487 3.513 18 O -0.522 6.522 19 C 0.109 3.891 20 F -0.187 7.187 21 C -0.185 4.185 22 C 0.063 3.937 23 O -0.379 6.379 24 C 0.060 3.940 25 C -0.159 4.159 26 C 0.105 3.895 27 C 0.163 3.837 28 H 0.041 0.959 29 H 0.269 0.731 30 H 0.047 0.953 31 H 0.029 0.971 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.103 0.897 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.104 0.896 42 H 0.058 0.942 43 H 0.104 0.896 44 H 0.093 0.907 45 H 0.100 0.900 46 H 0.069 0.931 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.695 -18.662 9.309 22.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.225 4.225 3 Si 0.895 3.105 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.219 1.219 7 C -0.468 4.468 8 H 0.084 0.916 9 N -0.321 5.321 10 C 0.017 3.983 11 C -0.169 4.169 12 C -0.111 4.111 13 H 0.086 0.914 14 C -0.150 4.150 15 C -0.039 4.039 16 N -0.305 5.305 17 C 0.271 3.729 18 O -0.398 6.398 19 C 0.087 3.913 20 F -0.167 7.167 21 C -0.223 4.223 22 C -0.013 4.013 23 O -0.298 6.298 24 C -0.016 4.016 25 C -0.197 4.197 26 C -0.019 4.019 27 C 0.055 3.945 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.077 0.923 41 H 0.122 0.878 42 H 0.076 0.924 43 H 0.122 0.878 44 H 0.111 0.889 45 H 0.118 0.882 46 H 0.087 0.913 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.023 -16.515 9.047 20.468 hybrid contribution -0.274 -1.641 -0.513 1.741 sum 7.749 -18.156 8.534 21.506 Atomic orbital electron populations 1.70813 1.06622 1.30244 1.48134 1.25745 0.96410 1.01031 0.99271 0.83499 0.74779 0.75893 0.76298 1.21080 1.22085 1.21926 1.19737 0.99677 0.87616 1.39745 0.91570 1.45028 1.35750 0.99753 1.51597 1.21603 0.91049 0.93907 0.91692 1.22844 0.99769 0.97176 0.97090 1.20619 0.98588 0.93790 0.98105 0.91392 1.20291 0.95851 0.97778 1.01040 1.21297 0.91257 0.96054 0.95245 1.46812 1.06559 1.26540 1.50596 1.20725 0.83446 0.86109 0.82643 1.90728 1.52846 1.54416 1.41791 1.21197 0.93133 0.81446 0.95486 1.92736 1.79488 1.52441 1.92082 1.23041 1.04944 1.02184 0.92141 1.22570 0.82223 0.96356 1.00196 1.87958 1.24047 1.91442 1.26349 1.22636 1.01815 0.95918 0.81263 1.22569 0.92251 1.02137 1.02757 1.21363 0.98944 0.84765 0.96853 1.20227 0.90390 0.87030 0.96819 0.94140 0.91888 0.93430 0.95282 0.91930 0.91646 0.90439 0.91885 0.87977 0.92249 0.88437 0.88112 0.92250 0.87790 0.92388 0.87830 0.88872 0.88152 0.91254 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.57 13.05 55.49 0.72 -26.84 16 2 C -0.02 -0.65 5.14 -17.43 -0.09 -0.74 16 3 Si 1.07 25.69 30.00 -169.99 -5.10 20.59 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.34 -9.53 9.41 -15.06 -0.14 -9.68 16 8 H 0.07 1.88 7.95 -52.48 -0.42 1.46 16 9 N -0.60 -14.72 2.85 -163.89 -0.47 -15.19 16 10 C 0.14 3.22 5.33 -2.32 -0.01 3.21 16 11 C -0.13 -2.20 6.55 -24.74 -0.16 -2.36 16 12 C -0.09 -1.49 2.46 -92.18 -0.23 -1.72 16 13 H 0.07 1.11 8.13 -51.93 -0.42 0.69 16 14 C -0.11 -1.38 5.32 -30.06 -0.16 -1.54 16 15 C 0.08 1.03 4.58 -6.54 -0.03 1.00 16 16 N -0.57 -9.14 3.12 -180.22 -0.56 -9.70 16 17 C 0.49 7.72 6.70 -10.99 -0.07 7.64 16 18 O -0.52 -10.07 15.25 5.55 0.08 -9.98 16 19 C 0.11 1.28 0.73 -91.59 -0.07 1.22 16 20 F -0.19 -2.15 13.49 2.25 0.03 -2.11 16 21 C -0.19 -1.78 4.87 -26.59 -0.13 -1.91 16 22 C 0.06 0.52 6.72 37.21 0.25 0.77 16 23 O -0.38 -3.79 10.77 -35.23 -0.38 -4.17 16 24 C 0.06 0.53 6.72 37.21 0.25 0.78 16 25 C -0.16 -1.71 4.54 -26.59 -0.12 -1.83 16 26 C 0.10 2.07 5.38 -6.42 -0.03 2.04 16 27 C 0.16 3.33 3.43 -68.49 -0.23 3.10 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.27 8.05 5.79 -40.82 -0.24 7.82 16 30 H 0.05 1.18 8.09 -51.93 -0.42 0.76 16 31 H 0.03 0.71 6.58 -51.93 -0.34 0.36 16 32 H 0.06 1.03 8.12 -51.93 -0.42 0.61 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.10 1.10 4.23 -51.93 -0.22 0.88 16 37 H 0.06 0.67 6.90 -51.93 -0.36 0.31 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.10 0.87 4.99 -51.93 -0.26 0.61 16 40 H 0.06 0.44 7.93 -51.93 -0.41 0.03 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.47 7.93 -51.93 -0.41 0.06 16 43 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 44 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.10 1.16 7.99 -51.93 -0.41 0.74 16 46 H 0.07 1.50 7.19 -51.93 -0.37 1.12 16 47 H 0.07 1.64 7.54 -51.93 -0.39 1.25 16 LS Contribution 352.14 15.07 5.31 5.31 Total: -1.00 -32.81 352.14 -8.62 -41.42 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -7.27 Total: 0.69 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -0.98 Total: -0.01 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.30 Total: -51.72 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.29 Total: -14.16 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.03 Total: -2.11 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.10 Total: 20.59 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.81 -8.62 -41.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042088676.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.283 kcal (2) G-P(sol) polarization free energy of solvation -32.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds