Wall clock time and date at job start Fri Apr 10 2020 18:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99780 * 2 1 4 4 H 1.48511 * 109.47033 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47680 * 299.99737 * 3 2 1 6 6 H 1.48502 * 109.47102 * 59.99926 * 3 2 1 7 7 C 1.38814 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00061 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99859 * 0.02562 * 7 2 1 10 10 C 1.47435 * 126.06313 * 359.96414 * 9 7 2 11 11 C 1.54505 * 107.15056 * 178.39766 * 10 9 7 12 12 C 1.55537 * 102.20753 * 336.67846 * 11 10 9 13 13 H 1.09003 * 112.35462 * 157.82139 * 12 11 10 14 14 C 1.53097 * 106.72115 * 282.26872 * 12 11 10 15 15 C 1.52341 * 110.64648 * 164.86647 * 14 12 11 16 16 N 1.47155 * 108.24495 * 302.87548 * 15 14 12 17 17 C 1.34774 * 121.21232 * 237.25055 * 16 15 14 18 18 O 1.21283 * 120.00074 * 179.71442 * 17 16 15 19 19 C 1.50700 * 120.00283 * 359.72147 * 17 16 15 20 20 F 1.39905 * 109.54182 * 309.99706 * 19 17 16 21 21 C 1.53174 * 109.61709 * 70.21961 * 19 17 16 22 22 C 1.53095 * 109.16381 * 176.89360 * 21 19 17 23 23 O 1.42907 * 109.41507 * 302.39448 * 22 21 19 24 24 C 1.42902 * 114.09860 * 61.15319 * 23 22 21 25 25 C 1.53096 * 109.41739 * 298.84419 * 24 23 22 26 26 C 1.46752 * 117.56785 * 56.97902 * 16 15 14 27 27 C 1.46473 * 126.05737 * 179.97438 * 9 7 2 28 28 H 1.08998 * 108.42051 * 90.73862 * 27 9 7 29 29 H 0.96995 * 120.00300 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.90557 * 297.78369 * 10 9 7 31 31 H 1.09005 * 109.89687 * 58.84060 * 10 9 7 32 32 H 1.09000 * 110.77678 * 95.43746 * 11 10 9 33 33 H 1.08994 * 110.78283 * 218.69142 * 11 10 9 34 34 H 1.08998 * 109.25561 * 285.27874 * 14 12 11 35 35 H 1.09006 * 109.25304 * 44.74863 * 14 12 11 36 36 H 1.08999 * 109.65182 * 183.15967 * 15 14 12 37 37 H 1.09003 * 109.60837 * 62.56541 * 15 14 12 38 38 H 1.09004 * 109.52433 * 296.79863 * 21 19 17 39 39 H 1.08999 * 109.52728 * 56.98798 * 21 19 17 40 40 H 1.08998 * 109.48473 * 182.41141 * 22 21 19 41 41 H 1.08997 * 109.48189 * 62.37446 * 22 21 19 42 42 H 1.09001 * 109.48035 * 178.86598 * 24 23 22 43 43 H 1.08995 * 109.48220 * 58.82981 * 24 23 22 44 44 H 1.09003 * 109.52213 * 297.70528 * 25 24 23 45 45 H 1.09003 * 109.57244 * 177.54385 * 25 24 23 46 46 H 1.08997 * 109.23137 * 68.08500 * 26 16 15 47 47 H 1.09007 * 109.22356 * 187.47963 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1405 -2.5438 0.0008 11 6 -0.4377 -4.0594 -0.0406 12 6 0.8671 -4.6335 -0.6628 13 1 1.0106 -5.6877 -0.4253 14 6 0.7938 -4.3626 -2.1678 15 6 2.1617 -4.5432 -2.8134 16 7 3.1112 -3.6425 -2.1406 17 6 3.8093 -2.7204 -2.8326 18 8 4.5824 -1.9858 -2.2550 19 6 3.6294 -2.6022 -4.3241 20 9 3.7509 -3.8660 -4.9118 21 6 2.2439 -2.0255 -4.6308 22 6 2.1015 -1.8373 -6.1435 23 8 3.1439 -0.9815 -6.6159 24 6 4.4610 -1.4917 -6.3989 25 6 4.6982 -1.6660 -4.8965 26 6 3.2656 -3.7808 -0.6878 27 6 1.9200 -3.7267 0.0005 28 1 2.0476 -4.0469 1.0346 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5598 -2.1080 0.9075 31 1 -0.5656 -2.0555 -0.8762 32 1 -0.6037 -4.4484 0.9640 33 1 -1.2946 -4.2681 -0.6810 34 1 0.0856 -5.0546 -2.6235 35 1 0.4539 -3.3401 -2.3328 36 1 2.1032 -4.2924 -3.8725 37 1 2.4880 -5.5766 -2.6962 38 1 1.4763 -2.7131 -4.2755 39 1 2.1312 -1.0630 -4.1318 40 1 1.1336 -1.3872 -6.3643 41 1 2.1737 -2.8055 -6.6387 42 1 5.1929 -0.7926 -6.8037 43 1 4.5642 -2.4554 -6.8975 44 1 4.6352 -0.6962 -4.4029 45 1 5.6859 -2.0959 -4.7303 46 1 3.7439 -4.7349 -0.4668 47 1 3.8920 -2.9704 -0.3146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042088677.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:48 Heat of formation + Delta-G solvation = -111.924394 kcal Electronic energy + Delta-G solvation = -31429.434737 eV Core-core repulsion = 27333.696386 eV Total energy + Delta-G solvation = -4095.738351 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.26762 -41.50968 -40.14089 -39.34532 -36.68570 -34.70866 -34.32927 -32.87028 -32.32684 -30.84361 -30.13536 -27.37258 -26.49883 -25.14783 -24.86339 -23.93198 -22.12126 -21.73407 -21.04305 -19.87473 -18.61769 -18.47286 -17.96147 -17.28113 -17.04836 -16.94057 -16.60842 -16.25692 -16.07979 -15.81440 -15.72078 -15.43547 -15.38618 -14.63036 -14.32882 -14.21733 -13.96127 -13.73884 -13.63549 -13.61596 -13.50491 -13.18707 -13.05032 -12.99276 -12.69046 -12.62475 -12.44158 -12.35386 -12.05875 -11.81286 -11.70082 -11.66693 -11.39801 -11.27526 -11.15517 -10.94134 -10.68930 -10.46696 -9.61728 -8.81542 -7.85416 -5.14848 1.32721 1.35432 1.37798 1.45958 1.87011 2.45181 2.80375 3.04020 3.13755 3.28112 3.33214 3.51578 3.56100 3.75325 3.84564 3.89607 4.07862 4.11593 4.21337 4.25375 4.37092 4.41196 4.45709 4.50323 4.52081 4.57588 4.64066 4.68122 4.72234 4.79350 4.84787 4.89853 4.94098 4.98135 5.05008 5.11454 5.16675 5.28965 5.52609 5.57707 5.64511 5.72637 5.82520 6.11264 6.22263 6.36617 7.01598 7.14402 7.81994 8.45078 9.24940 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011410 B = 0.006489 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.337687 B = 4313.987806 C = 5496.037558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.060 4.060 3 Si 0.948 3.052 4 H -0.283 1.283 5 H -0.294 1.294 6 H -0.290 1.290 7 C -0.201 4.201 8 H 0.065 0.935 9 N -0.604 5.604 10 C 0.185 3.815 11 C -0.129 4.129 12 C -0.084 4.084 13 H 0.121 0.879 14 C -0.121 4.121 15 C 0.096 3.904 16 N -0.583 5.583 17 C 0.495 3.505 18 O -0.569 6.569 19 C 0.121 3.879 20 F -0.182 7.182 21 C -0.173 4.173 22 C 0.067 3.933 23 O -0.397 6.397 24 C 0.065 3.935 25 C -0.161 4.161 26 C 0.115 3.885 27 C 0.142 3.858 28 H 0.029 0.971 29 H 0.242 0.758 30 H -0.003 1.003 31 H 0.011 0.989 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.040 0.960 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.063 0.937 40 H 0.116 0.884 41 H 0.082 0.918 42 H 0.121 0.879 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.056 -14.326 -12.798 19.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.253 4.253 3 Si 0.779 3.221 4 H -0.209 1.209 5 H -0.221 1.221 6 H -0.217 1.217 7 C -0.331 4.331 8 H 0.082 0.918 9 N -0.329 5.329 10 C 0.060 3.940 11 C -0.168 4.168 12 C -0.103 4.103 13 H 0.139 0.861 14 C -0.158 4.158 15 C -0.026 4.026 16 N -0.313 5.313 17 C 0.281 3.719 18 O -0.448 6.448 19 C 0.100 3.900 20 F -0.163 7.163 21 C -0.211 4.211 22 C -0.009 4.009 23 O -0.315 6.315 24 C -0.011 4.011 25 C -0.199 4.199 26 C -0.009 4.009 27 C 0.035 3.965 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.015 0.985 31 H 0.029 0.971 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.124 0.876 35 H 0.059 0.941 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.082 0.918 40 H 0.134 0.866 41 H 0.101 0.899 42 H 0.139 0.861 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.397 -13.590 -12.574 18.824 hybrid contribution 0.373 1.532 0.994 1.864 sum 3.770 -12.058 -11.580 17.138 Atomic orbital electron populations 1.70130 1.05379 1.24385 1.59668 1.25235 0.96299 0.99623 1.04160 0.85431 0.77962 0.81856 0.76843 1.20864 1.22129 1.21665 1.19074 0.90040 0.83707 1.40248 0.91756 1.44463 1.02161 1.00201 1.86057 1.20989 0.83449 0.92376 0.97144 1.22948 0.97988 0.94886 1.00937 1.22319 0.93964 0.99177 0.94879 0.86080 1.21758 0.96967 1.02062 0.95058 1.22189 0.88239 0.94465 0.97659 1.47958 1.40991 1.34396 1.07979 1.21062 0.80687 0.80053 0.90058 1.90682 1.39070 1.43753 1.71316 1.20942 0.99665 0.81090 0.88331 1.92836 1.97036 1.41412 1.84970 1.22872 0.94564 1.02777 1.00891 1.22697 0.92174 0.96263 0.89764 1.87940 1.15205 1.47525 1.80875 1.22746 0.84715 1.01629 0.92034 1.22592 0.98595 0.99742 0.98975 1.21345 0.98066 1.01809 0.79659 1.21018 0.92628 0.86351 0.96545 0.95336 0.94821 0.98513 0.97075 0.91364 0.89822 0.87646 0.94137 0.88243 0.88067 0.87952 0.91848 0.86595 0.89938 0.86060 0.90481 0.90812 0.88638 0.88685 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.75 10.38 21.65 0.22 -57.52 16 2 C -0.06 -3.59 5.49 84.86 0.47 -3.12 16 3 Si 0.95 49.92 29.55 68.60 2.03 51.95 16 4 H -0.28 -15.00 7.11 99.48 0.71 -14.29 16 5 H -0.29 -15.43 7.11 99.48 0.71 -14.72 16 6 H -0.29 -14.96 7.11 99.48 0.71 -14.25 16 7 C -0.20 -11.52 9.70 84.03 0.81 -10.71 16 8 H 0.06 3.87 6.53 -2.91 -0.02 3.85 16 9 N -0.60 -29.76 3.17 -674.19 -2.13 -31.89 16 10 C 0.19 8.77 4.59 86.71 0.40 9.17 16 11 C -0.13 -4.19 6.35 31.98 0.20 -3.99 16 12 C -0.08 -2.35 3.63 -9.56 -0.03 -2.39 16 13 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 14 C -0.12 -3.13 4.85 30.41 0.15 -2.99 16 15 C 0.10 2.33 5.18 86.04 0.45 2.78 16 16 N -0.58 -19.65 2.98 -824.10 -2.45 -22.10 16 17 C 0.50 18.80 6.80 87.66 0.60 19.40 16 18 O -0.57 -26.61 15.38 -3.04 -0.05 -26.66 16 19 C 0.12 3.60 0.73 -11.42 -0.01 3.59 16 20 F -0.18 -4.52 13.84 44.97 0.62 -3.90 16 21 C -0.17 -5.00 4.87 30.68 0.15 -4.85 16 22 C 0.07 1.51 6.72 72.01 0.48 2.00 16 23 O -0.40 -10.16 10.77 -148.98 -1.60 -11.77 16 24 C 0.07 1.40 6.72 72.01 0.48 1.88 16 25 C -0.16 -4.49 4.61 30.69 0.14 -4.35 16 26 C 0.11 4.12 5.67 85.76 0.49 4.61 16 27 C 0.14 5.32 3.00 44.75 0.13 5.46 16 28 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.24 14.57 8.31 -92.71 -0.77 13.80 16 30 H 0.00 -0.19 7.57 -2.39 -0.02 -0.21 16 31 H 0.01 0.59 7.00 -2.38 -0.02 0.57 16 32 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.08 2.34 7.98 -2.39 -0.02 2.32 16 34 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.04 1.42 6.45 -2.38 -0.02 1.40 16 36 H 0.10 2.24 3.73 -2.39 -0.01 2.23 16 37 H 0.10 1.86 8.14 -2.39 -0.02 1.85 16 38 H 0.10 2.79 5.36 -2.39 -0.01 2.77 16 39 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.08 1.46 7.93 -2.39 -0.02 1.44 16 42 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.08 1.36 7.93 -2.39 -0.02 1.34 16 44 H 0.07 2.48 7.90 -2.39 -0.02 2.46 16 45 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 46 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 47 H 0.05 2.40 5.56 -2.38 -0.01 2.39 16 Total: -1.00 -75.69 349.94 2.52 -73.17 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.98 Total: 12.23 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 4.91 Total: 16.50 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -4.36 Total: -111.52 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -1.65 Total: -38.43 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.62 Total: -3.90 kcal Atomic # 14 Polarization: 49.92 SS G_CDS: 2.03 Total: 51.95 kcal Total: -75.69 2.52 -73.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042088677.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.756 kcal (2) G-P(sol) polarization free energy of solvation -75.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds