Wall clock time and date at job start Fri Apr 10 2020 18:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00134 * 2 1 4 4 H 1.48499 * 109.47179 * 240.00519 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47335 * 120.00262 * 3 2 1 7 7 C 1.38811 * 120.00286 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00216 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99790 * 359.97438 * 7 2 1 10 10 C 1.48153 * 126.39563 * 359.97438 * 9 7 2 11 11 C 1.55302 * 107.04381 * 185.00295 * 10 9 7 12 12 C 1.53707 * 101.81479 * 22.44335 * 11 10 9 13 13 H 1.08998 * 111.10652 * 79.36691 * 12 11 10 14 14 C 1.51979 * 115.00616 * 206.54290 * 12 11 10 15 15 C 1.53885 * 107.28515 * 175.44713 * 14 12 11 16 16 N 1.46589 * 110.71105 * 308.18823 * 15 14 12 17 17 C 1.34785 * 119.75195 * 227.71617 * 16 15 14 18 18 O 1.21277 * 119.99854 * 175.16332 * 17 16 15 19 19 C 1.50695 * 119.99839 * 355.44023 * 17 16 15 20 20 F 1.39899 * 109.54601 * 55.92196 * 19 17 16 21 21 C 1.53185 * 109.54438 * 295.65752 * 19 17 16 22 22 C 1.53087 * 109.16314 * 183.15524 * 21 19 17 23 23 O 1.42900 * 109.41663 * 57.60937 * 22 21 19 24 24 C 1.42907 * 114.09762 * 298.83788 * 23 22 21 25 25 C 1.53090 * 109.41160 * 61.16153 * 24 23 22 26 26 C 1.47792 * 120.49965 * 48.00086 * 16 15 14 27 27 C 1.45502 * 126.39853 * 179.97438 * 9 7 2 28 28 H 1.09000 * 109.56987 * 266.63126 * 27 9 7 29 29 H 0.96995 * 120.00109 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.92404 * 65.65143 * 10 9 7 31 31 H 1.09001 * 110.08676 * 304.44057 * 10 9 7 32 32 H 1.08996 * 110.95677 * 264.31744 * 11 10 9 33 33 H 1.08994 * 110.99766 * 140.59057 * 11 10 9 34 34 H 1.09000 * 109.89118 * 55.99947 * 14 12 11 35 35 H 1.08997 * 109.95143 * 294.93058 * 14 12 11 36 36 H 1.09008 * 109.22630 * 187.87318 * 15 14 12 37 37 H 1.08996 * 109.19602 * 68.48901 * 15 14 12 38 38 H 1.09001 * 109.51894 * 303.05853 * 21 19 17 39 39 H 1.09002 * 109.51818 * 63.24793 * 21 19 17 40 40 H 1.09004 * 109.48250 * 297.62577 * 22 21 19 41 41 H 1.08998 * 109.48805 * 177.60198 * 22 21 19 42 42 H 1.09002 * 109.48441 * 301.17812 * 24 23 22 43 43 H 1.08998 * 109.49131 * 181.14841 * 24 23 22 44 44 H 1.09005 * 109.52102 * 182.48460 * 25 24 23 45 45 H 1.08993 * 109.52704 * 62.29430 * 25 24 23 46 46 H 1.09003 * 110.06780 * 67.70502 * 26 16 15 47 47 H 1.09005 * 110.06987 * 189.27052 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1467 -2.5531 0.0005 11 6 -0.4342 -4.0738 0.1296 12 6 0.8689 -4.5879 0.7623 13 1 0.8872 -4.3949 1.8349 14 6 1.1980 -6.0414 0.4643 15 6 2.5783 -6.3329 1.0789 16 7 3.5608 -5.3359 0.6434 17 6 4.7639 -5.7373 0.1871 18 8 5.5465 -4.9237 -0.2560 19 6 5.1339 -7.1977 0.2219 20 9 4.1699 -7.9414 -0.4672 21 6 5.2074 -7.6732 1.6762 22 6 5.6603 -9.1353 1.7046 23 8 6.9239 -9.2540 1.0478 24 6 6.9049 -8.8683 -0.3281 25 6 6.5020 -7.3955 -0.4381 26 6 3.2444 -3.8936 0.7067 27 6 1.9082 -3.7214 -0.0016 28 1 1.9983 -4.0796 -1.0271 29 1 -0.4850 0.8400 0.0004 30 1 -0.5636 -2.1743 -0.9325 31 1 -0.5826 -2.0199 0.8454 32 1 -0.5963 -4.5244 -0.8496 33 1 -1.2848 -4.2562 0.7861 34 1 1.2306 -6.2008 -0.6135 35 1 0.4473 -6.6922 0.9127 36 1 2.9089 -7.3233 0.7656 37 1 2.4992 -6.3081 2.1657 38 1 5.9225 -7.0597 2.2243 39 1 4.2236 -7.5876 2.1375 40 1 4.9242 -9.7539 1.1911 41 1 5.7555 -9.4665 2.7386 42 1 6.1850 -9.4834 -0.8682 43 1 7.8966 -9.0070 -0.7584 44 1 6.4441 -7.1112 -1.4888 45 1 7.2431 -6.7764 0.0673 46 1 3.1640 -3.5736 1.7456 47 1 4.0166 -3.3185 0.1958 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042088678.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:51 Heat of formation + Delta-G solvation = -111.810879 kcal Electronic energy + Delta-G solvation = -30056.579481 eV Core-core repulsion = 25960.846053 eV Total energy + Delta-G solvation = -4095.733428 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.35444 -41.58898 -40.16504 -39.39456 -37.02477 -34.76765 -34.28640 -32.92744 -32.34130 -31.02985 -30.20940 -27.32779 -26.57103 -25.03139 -24.82805 -23.60630 -22.04608 -21.84457 -21.13023 -20.52575 -18.84949 -18.35661 -17.92350 -17.40851 -17.02106 -16.94867 -16.62970 -16.30978 -16.02545 -15.94265 -15.73373 -15.48504 -15.26037 -14.89953 -14.54080 -14.18068 -13.96130 -13.81909 -13.67159 -13.63304 -13.45008 -13.39371 -13.15162 -13.07513 -12.74388 -12.62266 -12.40973 -12.16569 -12.06323 -11.81676 -11.73633 -11.69978 -11.56593 -11.31426 -11.07989 -11.00309 -10.75465 -10.51672 -9.83588 -8.94865 -7.89373 -5.24841 1.18930 1.41683 1.44425 1.50678 1.64248 2.46319 2.81610 2.96753 3.13266 3.25930 3.28668 3.44945 3.53555 3.74603 3.80295 3.91372 3.94058 4.16628 4.19696 4.22125 4.25040 4.28096 4.44047 4.46561 4.54469 4.56708 4.58306 4.68230 4.75052 4.76327 4.83264 4.85873 4.90342 4.95043 5.06350 5.06994 5.11477 5.17811 5.30845 5.44420 5.53905 5.63100 5.75325 6.15474 6.15727 6.17984 6.81091 7.04721 7.72817 8.39890 9.21344 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020480 B = 0.003521 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.859682 B = 7949.510040 C = 8899.648620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.060 4.060 3 Si 0.972 3.028 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.241 4.241 8 H 0.074 0.926 9 N -0.613 5.613 10 C 0.181 3.819 11 C -0.123 4.123 12 C -0.095 4.095 13 H 0.081 0.919 14 C -0.109 4.109 15 C 0.082 3.918 16 N -0.591 5.591 17 C 0.489 3.511 18 O -0.568 6.568 19 C 0.116 3.884 20 F -0.184 7.184 21 C -0.176 4.176 22 C 0.061 3.939 23 O -0.394 6.394 24 C 0.065 3.935 25 C -0.161 4.161 26 C 0.126 3.874 27 C 0.149 3.851 28 H 0.002 0.998 29 H 0.248 0.752 30 H -0.002 1.002 31 H 0.025 0.975 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.127 0.873 42 H 0.068 0.932 43 H 0.120 0.880 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.107 -23.989 5.121 25.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.253 4.253 3 Si 0.800 3.200 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.370 4.370 8 H 0.092 0.908 9 N -0.338 5.338 10 C 0.056 3.944 11 C -0.161 4.161 12 C -0.115 4.115 13 H 0.100 0.900 14 C -0.148 4.148 15 C -0.039 4.039 16 N -0.323 5.323 17 C 0.275 3.725 18 O -0.447 6.447 19 C 0.095 3.905 20 F -0.165 7.165 21 C -0.214 4.214 22 C -0.015 4.015 23 O -0.312 6.312 24 C -0.011 4.011 25 C -0.199 4.199 26 C 0.002 3.998 27 C 0.041 3.959 28 H 0.020 0.980 29 H 0.057 0.943 30 H 0.016 0.984 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.133 0.867 40 H 0.090 0.910 41 H 0.145 0.855 42 H 0.086 0.914 43 H 0.138 0.862 44 H 0.102 0.898 45 H 0.107 0.893 46 H 0.092 0.908 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.582 -23.411 4.967 25.104 hybrid contribution -0.113 2.142 -0.714 2.261 sum 7.469 -21.268 4.253 22.939 Atomic orbital electron populations 1.70137 1.06089 1.25409 1.57970 1.25559 0.96565 1.00707 1.02468 0.85251 0.77299 0.79264 0.78146 1.20920 1.21546 1.20140 1.19272 0.90593 0.83795 1.43376 0.90766 1.44435 1.02588 1.00276 1.86526 1.21355 0.82837 0.92523 0.97652 1.22609 0.97753 0.94837 1.00867 1.22201 0.94561 0.95248 0.99474 0.90020 1.21781 0.96626 0.94876 1.01478 1.22562 0.88330 0.92213 1.00777 1.48354 1.14458 1.07209 1.62292 1.21456 0.81956 0.91670 0.77373 1.90708 1.51497 1.55913 1.46627 1.21145 0.88350 0.85391 0.95653 1.92804 1.64793 1.77550 1.81334 1.23016 1.06265 1.00444 0.91675 1.22771 0.85633 0.92838 1.00250 1.87947 1.32592 1.86669 1.24035 1.22685 1.04133 0.91244 0.83047 1.22600 0.94000 1.00615 1.02688 1.21496 0.97279 0.80343 1.00655 1.21178 0.93147 0.86294 0.95282 0.98020 0.94270 0.98401 0.95676 0.91464 0.89277 0.92147 0.86513 0.86266 0.88835 0.88939 0.86693 0.91037 0.85472 0.91417 0.86249 0.89815 0.89305 0.90769 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.66 10.44 21.65 0.23 -57.44 16 2 C -0.06 -3.47 5.49 84.86 0.47 -3.01 16 3 Si 0.97 47.20 29.55 68.60 2.03 49.23 16 4 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 6 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 7 C -0.24 -13.95 9.88 84.03 0.83 -13.12 16 8 H 0.07 4.22 7.41 -2.91 -0.02 4.20 16 9 N -0.61 -32.12 3.35 -668.53 -2.24 -34.36 16 10 C 0.18 8.95 5.45 86.85 0.47 9.43 16 11 C -0.12 -4.27 6.54 31.62 0.21 -4.06 16 12 C -0.10 -3.01 2.61 -10.07 -0.03 -3.04 16 13 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 14 C -0.11 -2.42 5.72 30.56 0.17 -2.24 16 15 C 0.08 1.66 4.66 86.66 0.40 2.06 16 16 N -0.59 -17.54 3.00 -818.02 -2.46 -20.00 16 17 C 0.49 15.03 6.78 87.65 0.59 15.63 16 18 O -0.57 -22.46 15.31 -3.02 -0.05 -22.51 16 19 C 0.12 2.48 0.73 -11.42 -0.01 2.48 16 20 F -0.18 -3.79 13.68 44.97 0.62 -3.17 16 21 C -0.18 -2.62 4.87 30.69 0.15 -2.47 16 22 C 0.06 0.72 6.72 72.01 0.48 1.21 16 23 O -0.39 -6.51 10.77 -148.98 -1.60 -8.12 16 24 C 0.07 0.99 6.72 72.01 0.48 1.47 16 25 C -0.16 -3.29 4.55 30.69 0.14 -3.15 16 26 C 0.13 4.84 5.73 85.87 0.49 5.33 16 27 C 0.15 6.24 2.77 45.74 0.13 6.37 16 28 H 0.00 0.11 7.93 -2.39 -0.02 0.09 16 29 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 30 H 0.00 -0.13 7.77 -2.39 -0.02 -0.15 16 31 H 0.02 1.37 7.21 -2.39 -0.02 1.36 16 32 H 0.07 2.20 8.12 -2.39 -0.02 2.19 16 33 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.06 1.48 7.98 -2.39 -0.02 1.46 16 35 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.12 1.95 3.95 -2.38 -0.01 1.94 16 37 H 0.09 1.45 7.90 -2.39 -0.02 1.44 16 38 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.11 1.29 5.62 -2.39 -0.01 1.28 16 40 H 0.07 0.71 7.93 -2.38 -0.02 0.69 16 41 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 0.91 7.93 -2.39 -0.02 0.89 16 43 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 45 H 0.09 2.01 7.97 -2.39 -0.02 1.99 16 46 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 47 H 0.06 2.61 6.74 -2.38 -0.02 2.60 16 Total: -1.00 -75.04 354.56 2.48 -72.56 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 0.97 Total: 10.92 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 4.99 Total: 12.89 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -4.47 Total: -111.79 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -1.65 Total: -30.63 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.62 Total: -3.17 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -75.04 2.48 -72.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042088678.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.249 kcal (2) G-P(sol) polarization free energy of solvation -75.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds