Wall clock time and date at job start Fri Apr 10 2020 18:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.47390 * 125.37507 * 2 1 4 4 C 1.54106 * 103.69869 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.54577 * 241.22572 * 4 3 2 6 6 C 1.50695 * 110.55209 * 118.55486 * 4 3 2 7 7 O 1.21276 * 120.00101 * 262.00224 * 6 4 3 8 8 N 1.34775 * 119.99694 * 81.99461 * 6 4 3 9 9 C 1.46509 * 120.00003 * 179.97438 * 8 6 4 10 10 C 1.52998 * 109.47216 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.46891 * 305.00605 * 10 9 8 12 12 C 1.54803 * 109.46796 * 185.00749 * 10 9 8 13 13 N 1.45120 * 109.53738 * 172.11366 * 12 10 9 14 14 C 1.36932 * 118.76030 * 269.30534 * 13 12 10 15 15 H 1.08001 * 119.99975 * 26.08613 * 14 13 12 16 16 C 1.38809 * 120.00352 * 206.07967 * 14 13 12 17 17 N 1.31621 * 120.00302 * 15.45168 * 16 14 13 18 18 Si 1.86804 * 120.00359 * 195.45193 * 16 14 13 19 19 H 1.48508 * 109.46787 * 59.99746 * 18 16 14 20 20 H 1.48490 * 109.47317 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46996 * 300.00269 * 18 16 14 22 22 C 1.47511 * 122.48310 * 89.28994 * 13 12 10 23 23 C 1.53572 * 111.03021 * 318.36868 * 22 13 12 24 24 C 1.51543 * 109.57954 * 320.02679 * 23 22 13 25 25 O 1.38014 * 109.46698 * 65.00139 * 10 9 8 26 26 N 1.47059 * 103.99085 * 359.88424 * 4 3 2 27 27 C 1.33939 * 125.40945 * 179.90861 * 2 1 3 28 28 O 1.21588 * 123.04529 * 0.02562 * 27 2 1 29 29 H 1.08999 * 109.47169 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46993 * 300.06894 * 1 2 3 31 31 H 1.09003 * 109.46965 * 60.06700 * 1 2 3 32 32 H 1.08995 * 110.66092 * 61.47728 * 3 2 1 33 33 H 1.09003 * 110.59262 * 298.56108 * 3 2 1 34 34 H 0.96996 * 120.00463 * 0.02562 * 8 6 4 35 35 H 1.09002 * 109.46747 * 59.99967 * 9 8 6 36 36 H 1.09006 * 109.46797 * 300.00758 * 9 8 6 37 37 H 1.08997 * 109.46548 * 292.13840 * 12 10 9 38 38 H 1.09003 * 109.45907 * 52.10771 * 12 10 9 39 39 H 0.96995 * 120.00612 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.16861 * 78.76979 * 22 13 12 41 41 H 1.09002 * 109.16813 * 198.02643 * 22 13 12 42 42 H 1.08999 * 109.45563 * 199.99078 * 23 22 13 43 43 H 1.08997 * 109.44862 * 80.05594 * 23 22 13 44 44 H 1.09002 * 109.58736 * 331.61149 * 24 23 22 45 45 H 1.08994 * 109.58682 * 211.17827 * 24 23 22 46 46 H 0.97001 * 125.40823 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3184 1.2018 0.0000 4 6 3.7504 0.6326 -0.0007 5 1 4.2877 0.9476 0.8939 6 6 4.4907 1.0643 -1.2402 7 8 4.5691 0.3158 -2.1913 8 7 5.0656 2.2822 -1.2919 9 6 5.7858 2.7018 -2.4968 10 6 6.3380 4.1142 -2.2950 11 1 5.5254 4.7859 -2.0182 12 6 6.9891 4.6065 -3.6104 13 7 7.3460 6.0071 -3.4808 14 6 6.4325 6.9569 -3.8529 15 1 5.3770 6.7298 -3.8285 16 6 6.8632 8.2117 -4.2615 17 7 8.1250 8.4017 -4.5840 18 14 5.6519 9.6308 -4.3536 19 1 5.0686 9.8717 -3.0092 20 1 6.3567 10.8542 -4.8133 21 1 4.5674 9.2945 -5.3106 22 6 8.6555 6.4463 -2.9629 23 6 9.0855 5.5956 -1.7588 24 6 7.8842 5.3196 -0.8771 25 8 7.2845 4.0989 -1.2906 26 7 3.5538 -0.8248 0.0019 27 6 2.2411 -1.0916 0.0017 28 8 1.7946 -2.2226 0.0031 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5149 0.8894 31 1 -0.3633 0.5128 -0.8906 32 1 2.1439 1.7973 0.8961 33 1 2.1425 1.7968 -0.8962 34 1 5.0031 2.8807 -0.5312 35 1 5.1047 2.6956 -3.3478 36 1 6.6096 2.0134 -2.6858 37 1 7.8856 4.0206 -3.8134 38 1 6.2831 4.4863 -4.4321 39 1 8.4261 9.2785 -4.8692 40 1 9.4019 6.3530 -3.7518 41 1 8.5874 7.4902 -2.6565 42 1 9.8407 6.1333 -1.1855 43 1 9.5015 4.6518 -2.1113 44 1 7.1644 6.1322 -0.9754 45 1 8.2046 5.2360 0.1613 46 1 4.2621 -1.4875 0.0025 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073726554.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:04 Heat of formation + Delta-G solvation = -58.796310 kcal Electronic energy + Delta-G solvation = -28518.667757 eV Core-core repulsion = 24445.153175 eV Total energy + Delta-G solvation = -4073.514582 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.58107 -39.60895 -38.79504 -36.45011 -35.37780 -34.80015 -34.33335 -32.30499 -31.57577 -30.03043 -28.54632 -27.43362 -25.73448 -25.36905 -24.04103 -22.66325 -21.02445 -20.82985 -20.55675 -19.62577 -18.11481 -17.85591 -17.07009 -16.74606 -16.20347 -16.08646 -15.78273 -15.27075 -15.06798 -14.95482 -14.50812 -14.33573 -14.18569 -13.80872 -13.74779 -13.61624 -13.15621 -13.00546 -12.74388 -12.62976 -12.43269 -12.17996 -12.16058 -11.48832 -11.27484 -11.05878 -10.93960 -10.73964 -10.54925 -10.38778 -10.29720 -9.94463 -9.84486 -9.79168 -9.49911 -9.13237 -8.94369 -8.89649 -8.50571 -6.83843 -5.91262 -3.36685 2.13228 2.44275 2.70685 3.07002 3.28635 3.35146 3.35583 3.60523 3.92115 4.05243 4.35058 4.39051 4.43692 4.71655 4.94665 5.04311 5.10053 5.20092 5.27779 5.39683 5.43719 5.51216 5.56715 5.61285 5.77640 5.87559 5.92430 6.07633 6.15621 6.26452 6.32230 6.37042 6.46748 6.62598 6.66635 6.73931 6.80107 7.13926 7.27625 7.36625 7.55899 7.68801 8.02030 8.10981 8.31544 8.32221 9.09375 9.74007 10.20005 11.16249 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.018797 B = 0.002642 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.220761 B =10597.051648 C =11465.195631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.638 5.638 3 C 0.106 3.894 4 C 0.104 3.896 5 H 0.117 0.883 6 C 0.498 3.502 7 O -0.526 6.526 8 N -0.712 5.712 9 C 0.132 3.868 10 C 0.067 3.933 11 H 0.053 0.947 12 C 0.128 3.872 13 N -0.591 5.591 14 C -0.268 4.268 15 H 0.066 0.934 16 C 0.008 3.992 17 N -0.902 5.902 18 Si 0.903 3.097 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.176 3.824 23 C -0.177 4.177 24 C 0.088 3.912 25 O -0.396 6.396 26 N -0.714 5.714 27 C 0.705 3.295 28 O -0.585 6.585 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.404 0.596 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.256 0.744 40 H 0.027 0.973 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.070 0.930 46 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.009 -9.564 12.738 17.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.377 5.377 3 C -0.018 4.018 4 C -0.007 4.007 5 H 0.135 0.865 6 C 0.281 3.719 7 O -0.402 6.402 8 N -0.364 5.364 9 C 0.008 3.992 10 C 0.005 3.995 11 H 0.071 0.929 12 C -0.002 4.002 13 N -0.312 5.312 14 C -0.398 4.398 15 H 0.084 0.916 16 C -0.191 4.191 17 N -0.545 5.545 18 Si 0.732 3.268 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.208 1.208 22 C 0.052 3.948 23 C -0.216 4.216 24 C 0.012 3.988 25 O -0.316 6.316 26 N -0.376 5.376 27 C 0.406 3.594 28 O -0.463 6.463 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.239 0.761 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.046 0.954 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -8.194 -10.655 12.019 18.031 hybrid contribution -0.115 1.425 0.027 1.430 sum -8.309 -9.230 12.046 17.302 Atomic orbital electron populations 1.21437 0.75334 1.04081 1.01482 1.47069 1.06485 1.05565 1.78618 1.22346 0.86137 0.89035 1.04276 1.21850 0.97233 0.83393 0.98209 0.86509 1.20672 0.79889 0.82239 0.89125 1.90761 1.59487 1.52774 1.37147 1.45986 1.54449 1.16519 1.19460 1.21489 0.95707 0.95299 0.86703 1.22629 0.91038 0.93609 0.92261 0.92941 1.21403 0.97941 0.86959 0.93884 1.43826 1.14846 0.99639 1.72913 1.19162 0.88458 0.92683 1.39490 0.91613 1.25053 0.96257 0.99264 0.98553 1.70053 1.14851 1.22551 1.47086 0.86372 0.80479 0.81936 0.77969 1.20982 1.21567 1.20784 1.21002 0.85877 0.96959 0.90990 1.22773 0.98046 1.01159 0.99633 1.22017 0.94606 0.86287 0.95841 1.86065 1.57256 1.33592 1.54652 1.44820 1.06957 1.06178 1.79612 1.15793 0.81702 0.84632 0.77289 1.90959 1.75828 1.20903 1.58562 0.89496 0.91929 0.91950 0.88576 0.89361 0.76109 0.90061 0.90784 0.93808 0.92620 0.93433 0.95447 0.90621 0.92078 0.92385 0.92004 0.91198 0.72336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.85 11.22 59.85 0.67 1.52 16 2 N -0.64 -6.20 3.36 -186.45 -0.63 -6.82 16 3 C 0.11 0.73 7.34 -2.98 -0.02 0.71 16 4 C 0.10 0.83 4.16 -68.20 -0.28 0.55 16 5 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 6 C 0.50 5.63 6.94 -10.99 -0.08 5.55 16 7 O -0.53 -8.37 16.58 5.56 0.09 -8.28 16 8 N -0.71 -7.50 5.49 -60.29 -0.33 -7.83 16 9 C 0.13 1.76 5.34 -4.04 -0.02 1.73 16 10 C 0.07 1.04 2.68 -25.78 -0.07 0.97 16 11 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 12 C 0.13 2.45 5.12 -3.83 -0.02 2.43 16 13 N -0.59 -13.57 2.23 -172.02 -0.38 -13.95 16 14 C -0.27 -6.80 9.46 -15.06 -0.14 -6.94 16 15 H 0.07 1.63 7.88 -52.49 -0.41 1.21 16 16 C 0.01 0.21 4.89 -17.43 -0.09 0.12 16 17 N -0.90 -24.87 11.00 55.49 0.61 -24.26 16 18 Si 0.90 20.51 29.58 -169.99 -5.03 15.48 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 C 0.18 3.94 4.70 -3.19 -0.02 3.93 16 23 C -0.18 -3.10 5.79 -27.17 -0.16 -3.26 16 24 C 0.09 1.41 6.37 36.42 0.23 1.65 16 25 O -0.40 -6.23 9.38 -26.53 -0.25 -6.48 16 26 N -0.71 -7.52 5.62 -59.33 -0.33 -7.86 16 27 C 0.71 9.11 8.60 -88.41 -0.76 8.35 16 28 O -0.58 -9.81 17.29 5.29 0.09 -9.71 16 29 H 0.09 0.73 7.52 -51.93 -0.39 0.34 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.62 7.73 -51.93 -0.40 0.22 16 34 H 0.40 3.34 8.46 -40.82 -0.35 2.99 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.04 0.84 8.11 -51.93 -0.42 0.42 16 38 H 0.06 1.07 7.98 -51.93 -0.41 0.66 16 39 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.03 0.68 8.04 -51.93 -0.42 0.26 16 41 H 0.08 1.87 6.37 -51.93 -0.33 1.54 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.06 1.02 8.01 -51.93 -0.42 0.61 16 44 H 0.06 1.11 7.40 -51.93 -0.38 0.73 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.43 4.24 8.96 -40.82 -0.37 3.87 16 LS Contribution 372.51 15.07 5.61 5.61 Total: -1.00 -34.34 372.51 -8.53 -42.88 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -7.24 Total: 3.93 kcal Atomic # 6 Polarization: 18.05 SS G_CDS: -0.75 Total: 17.30 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -1.06 Total: -60.73 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.07 Total: -24.47 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.34 -8.53 -42.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073726554.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.921 kcal (2) G-P(sol) polarization free energy of solvation -34.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds