Wall clock time and date at job start Fri Apr 10 2020 18:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.47056 * 125.40676 * 2 1 4 4 C 1.54100 * 103.86119 * 180.02562 * 3 2 1 5 5 H 1.08997 * 110.67387 * 241.34797 * 4 3 2 6 6 C 1.50700 * 110.54972 * 118.59191 * 4 3 2 7 7 O 1.21281 * 119.99950 * 264.10632 * 6 4 3 8 8 N 1.34775 * 119.99800 * 84.10238 * 6 4 3 9 9 C 1.46497 * 120.00024 * 179.97438 * 8 6 4 10 10 C 1.53002 * 109.47412 * 180.02562 * 9 8 6 11 11 H 1.08998 * 108.44749 * 62.12278 * 10 9 8 12 12 C 1.46923 * 108.62151 * 180.02562 * 10 9 8 13 13 N 1.50111 * 106.77708 * 177.91883 * 12 10 9 14 14 C 1.36937 * 120.63739 * 111.32288 * 13 12 10 15 15 H 1.08001 * 119.99816 * 155.71119 * 14 13 12 16 16 C 1.38811 * 119.99910 * 335.71454 * 14 13 12 17 17 N 1.31621 * 120.00316 * 340.61550 * 16 14 13 18 18 Si 1.86801 * 119.99878 * 160.61659 * 16 14 13 19 19 H 1.48499 * 109.47203 * 59.99913 * 18 16 14 20 20 H 1.48504 * 109.47102 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47278 * 299.99958 * 18 16 14 22 22 C 1.43423 * 118.72694 * 291.34404 * 13 12 10 23 23 C 1.55331 * 116.24035 * 89.35714 * 22 13 12 24 24 C 1.55197 * 108.97422 * 319.40453 * 23 22 13 25 25 O 1.39751 * 110.50442 * 322.32983 * 24 23 22 26 26 N 1.47062 * 103.86107 * 359.97438 * 4 3 2 27 27 C 1.33939 * 109.18144 * 0.02562 * 26 4 3 28 28 O 1.21581 * 123.04692 * 180.02562 * 27 26 4 29 29 H 1.09002 * 109.46939 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46766 * 299.97272 * 1 2 3 31 31 H 1.09000 * 109.47203 * 59.97586 * 1 2 3 32 32 H 1.08995 * 110.54764 * 61.40659 * 3 2 1 33 33 H 1.09000 * 110.54404 * 298.59394 * 3 2 1 34 34 H 0.97000 * 119.99959 * 0.02562 * 8 6 4 35 35 H 1.08997 * 109.47217 * 59.99961 * 9 8 6 36 36 H 1.09002 * 109.47280 * 300.00177 * 9 8 6 37 37 H 1.08998 * 109.98646 * 58.60216 * 12 10 9 38 38 H 1.09001 * 109.99050 * 297.23506 * 12 10 9 39 39 H 0.96990 * 120.00413 * 180.02562 * 17 16 14 40 40 H 1.09002 * 108.12700 * 327.60123 * 22 13 12 41 41 H 1.09001 * 107.96458 * 210.98712 * 22 13 12 42 42 H 1.09004 * 109.56965 * 79.27869 * 23 22 13 43 43 H 1.08993 * 109.57541 * 199.52382 * 23 22 13 44 44 H 1.08998 * 109.25458 * 82.48456 * 24 23 22 45 45 H 1.08996 * 109.25408 * 201.92543 * 24 23 22 46 46 H 0.97002 * 125.40752 * 179.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3171 1.1986 0.0000 4 6 3.7504 0.6327 -0.0007 5 1 4.2882 0.9459 0.8941 6 6 4.4900 1.0669 -1.2399 7 8 4.5378 0.3345 -2.2054 8 7 5.0982 2.2690 -1.2751 9 6 5.8176 2.6909 -2.4795 10 6 6.4113 4.0835 -2.2575 11 1 7.1256 4.0270 -1.4361 12 6 7.1271 4.4879 -3.4752 13 7 7.6467 5.8750 -3.2318 14 6 8.9907 6.1042 -3.1037 15 1 9.3946 7.0823 -3.3194 16 6 9.8338 5.0794 -2.6967 17 7 9.3405 4.0282 -2.0769 18 14 11.6687 5.1920 -3.0286 19 1 12.2198 6.3974 -2.3588 20 1 12.3430 3.9798 -2.4984 21 1 11.9020 5.2887 -4.4919 22 6 6.7086 6.9556 -3.1356 23 6 6.1521 7.2577 -1.7172 24 6 5.8685 5.9162 -0.9902 25 8 5.3618 4.9712 -1.8865 26 7 3.5538 -0.8247 -0.0003 27 6 2.2412 -1.0917 -0.0002 28 8 1.7947 -2.2225 0.0006 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5135 0.8903 31 1 -0.3633 0.5142 -0.8898 32 1 2.1406 1.7934 0.8961 33 1 2.1405 1.7934 -0.8962 34 1 5.0602 2.8546 -0.5027 35 1 5.1281 2.7198 -3.3232 36 1 6.6199 1.9837 -2.6900 37 1 6.4448 4.4894 -4.3252 38 1 7.9570 3.8067 -3.6633 39 1 9.9297 3.3123 -1.7922 40 1 5.8660 6.7325 -3.7900 41 1 7.1949 7.8572 -3.5081 42 1 6.8862 7.8314 -1.1515 43 1 5.2281 7.8296 -1.8016 44 1 6.7951 5.5389 -0.5577 45 1 5.1434 6.0851 -0.1941 46 1 4.2621 -1.4874 -0.0010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073726557.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:14 Heat of formation + Delta-G solvation = -52.196418 kcal Electronic energy + Delta-G solvation = -29073.500945 eV Core-core repulsion = 25000.272555 eV Total energy + Delta-G solvation = -4073.228390 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.47402 -39.53060 -38.70889 -36.34327 -35.11778 -34.69953 -34.23285 -32.30817 -31.32604 -29.78224 -28.61750 -27.44632 -25.60971 -25.37463 -23.84994 -22.51689 -20.92332 -20.73183 -20.35808 -19.67217 -17.98886 -17.71190 -17.15176 -16.52277 -16.14492 -15.87407 -15.45002 -15.02522 -14.98849 -14.58269 -14.35163 -14.24250 -14.11090 -13.89035 -13.68202 -13.46223 -13.08085 -12.83339 -12.62179 -12.55091 -12.39873 -12.15929 -11.99991 -11.47635 -11.29786 -10.90992 -10.81506 -10.56043 -10.44375 -10.29255 -10.18955 -10.01802 -9.75678 -9.60720 -9.37680 -8.92121 -8.85140 -8.80696 -8.57020 -6.89513 -5.99400 -3.37644 2.25868 2.61602 2.85895 3.21988 3.29461 3.36333 3.38571 3.74012 4.06427 4.37737 4.49549 4.54879 4.63034 4.84042 5.06251 5.14746 5.16438 5.21496 5.29798 5.46427 5.61239 5.66374 5.73626 5.83200 5.88252 6.04551 6.23385 6.32020 6.36812 6.42073 6.42940 6.58581 6.61441 6.73002 6.80293 6.88322 6.90726 7.03018 7.24375 7.24423 7.59553 7.65491 8.02485 8.23347 8.25573 8.42226 9.00269 9.68392 10.22278 11.09854 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019645 B = 0.002977 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.968389 B = 9404.049658 C =10362.191738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.637 5.637 3 C 0.107 3.893 4 C 0.104 3.896 5 H 0.116 0.884 6 C 0.497 3.503 7 O -0.529 6.529 8 N -0.706 5.706 9 C 0.120 3.880 10 C 0.061 3.939 11 H 0.108 0.892 12 C 0.143 3.857 13 N -0.587 5.587 14 C -0.250 4.250 15 H 0.069 0.931 16 C 0.003 3.997 17 N -0.909 5.909 18 Si 0.905 3.095 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.160 3.840 23 C -0.172 4.172 24 C 0.067 3.933 25 O -0.371 6.371 26 N -0.714 5.714 27 C 0.706 3.294 28 O -0.586 6.586 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.402 0.598 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.019 0.981 38 H 0.104 0.896 39 H 0.256 0.744 40 H 0.032 0.968 41 H 0.033 0.967 42 H 0.056 0.944 43 H 0.049 0.951 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.711 -1.109 7.322 14.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.377 5.377 3 C -0.017 4.017 4 C -0.007 4.007 5 H 0.133 0.867 6 C 0.279 3.721 7 O -0.405 6.405 8 N -0.357 5.357 9 C -0.004 4.004 10 C 0.003 3.997 11 H 0.125 0.875 12 C 0.018 3.982 13 N -0.308 5.308 14 C -0.379 4.379 15 H 0.087 0.913 16 C -0.195 4.195 17 N -0.554 5.554 18 Si 0.735 3.265 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.031 3.969 23 C -0.213 4.213 24 C -0.011 4.011 25 O -0.289 6.289 26 N -0.375 5.375 27 C 0.406 3.594 28 O -0.464 6.464 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.237 0.763 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.037 0.963 38 H 0.122 0.878 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -13.160 -2.349 6.564 14.893 hybrid contribution 1.668 0.390 0.399 1.759 sum -11.492 -1.959 6.964 13.580 Atomic orbital electron populations 1.21421 0.75430 1.04009 1.01411 1.46991 1.06448 1.05645 1.78626 1.22264 0.86196 0.88991 1.04227 1.21862 0.97223 0.83236 0.98360 0.86655 1.20622 0.80018 0.82257 0.89191 1.90748 1.60290 1.53213 1.36287 1.45909 1.53379 1.17619 1.18777 1.21772 0.95852 0.96344 0.86393 1.22204 0.88404 0.85682 1.03431 0.87488 1.20743 0.96749 0.88155 0.92579 1.44101 1.02258 1.02442 1.81973 1.19226 0.82179 0.97797 1.38687 0.91323 1.24886 0.98216 0.98158 0.98216 1.69838 1.34600 1.10523 1.40434 0.86329 0.85035 0.76937 0.78242 1.21025 1.21620 1.21064 1.20381 0.92155 0.91473 0.92847 1.23576 0.99336 0.97190 1.01206 1.22368 0.97956 0.89902 0.90846 1.87509 1.34136 1.43350 1.63911 1.44822 1.06923 1.06275 1.79510 1.15792 0.81719 0.84616 0.77264 1.90949 1.75864 1.20932 1.58701 0.89544 0.91986 0.92007 0.88713 0.89368 0.76349 0.91873 0.90200 0.96253 0.87810 0.93399 0.94999 0.94871 0.92503 0.93180 0.91884 0.92971 0.72370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.96 11.22 59.85 0.67 1.63 16 2 N -0.64 -6.93 3.36 -186.73 -0.63 -7.55 16 3 C 0.11 0.90 7.32 -3.16 -0.02 0.88 16 4 C 0.10 1.02 4.17 -68.20 -0.28 0.73 16 5 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 6 C 0.50 6.71 6.93 -10.99 -0.08 6.63 16 7 O -0.53 -9.55 16.60 5.56 0.09 -9.46 16 8 N -0.71 -9.33 5.40 -60.30 -0.33 -9.66 16 9 C 0.12 1.99 5.27 -4.04 -0.02 1.97 16 10 C 0.06 1.14 2.01 -29.64 -0.06 1.08 16 11 H 0.11 2.24 5.25 -51.93 -0.27 1.97 16 12 C 0.14 3.04 4.71 -4.93 -0.02 3.02 16 13 N -0.59 -13.41 2.61 -174.50 -0.46 -13.86 16 14 C -0.25 -6.26 9.61 -15.06 -0.14 -6.40 16 15 H 0.07 1.73 7.87 -52.49 -0.41 1.32 16 16 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 17 N -0.91 -22.66 9.57 55.49 0.53 -22.13 16 18 Si 0.90 20.28 29.60 -169.99 -5.03 15.25 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.16 3.20 5.33 -4.43 -0.02 3.18 16 23 C -0.17 -2.97 6.74 -24.33 -0.16 -3.13 16 24 C 0.07 1.12 6.40 38.32 0.25 1.37 16 25 O -0.37 -6.44 9.33 -32.25 -0.30 -6.74 16 26 N -0.71 -8.58 5.63 -59.33 -0.33 -8.92 16 27 C 0.71 9.96 8.60 -88.40 -0.76 9.20 16 28 O -0.59 -10.43 17.29 5.29 0.09 -10.34 16 29 H 0.09 0.79 7.52 -51.93 -0.39 0.40 16 30 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.77 7.72 -51.93 -0.40 0.37 16 34 H 0.40 4.45 8.19 -40.82 -0.33 4.12 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.10 2.46 6.03 -51.93 -0.31 2.14 16 39 H 0.26 6.35 8.31 -40.82 -0.34 6.01 16 40 H 0.03 0.62 7.99 -51.93 -0.41 0.21 16 41 H 0.03 0.66 7.95 -51.93 -0.41 0.25 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 1.20 6.67 -51.93 -0.35 0.86 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.43 4.89 8.96 -40.82 -0.37 4.52 16 LS Contribution 367.82 15.07 5.54 5.54 Total: -1.00 -31.99 367.82 -8.59 -40.58 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.03 Total: 7.15 kcal Atomic # 6 Polarization: 20.89 SS G_CDS: -0.75 Total: 20.14 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: -1.21 Total: -62.13 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.12 Total: -26.54 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.25 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.99 -8.59 -40.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073726557.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.613 kcal (2) G-P(sol) polarization free energy of solvation -31.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds