Wall clock time and date at job start Fri Apr 10 2020 18:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.47056 * 125.40676 * 2 1 4 4 C 1.54100 * 103.86119 * 180.02562 * 3 2 1 5 5 H 1.08997 * 110.67387 * 241.34797 * 4 3 2 6 6 C 1.50700 * 110.54972 * 118.59191 * 4 3 2 7 7 O 1.21281 * 119.99950 * 264.10632 * 6 4 3 8 8 N 1.34775 * 119.99800 * 84.10238 * 6 4 3 9 9 C 1.46497 * 120.00024 * 179.97438 * 8 6 4 10 10 C 1.53002 * 109.47412 * 180.02562 * 9 8 6 11 11 H 1.08998 * 108.44749 * 62.12278 * 10 9 8 12 12 C 1.46923 * 108.62151 * 180.02562 * 10 9 8 13 13 N 1.50111 * 106.77708 * 177.91883 * 12 10 9 14 14 C 1.36937 * 120.63739 * 111.32288 * 13 12 10 15 15 H 1.08001 * 119.99816 * 155.71119 * 14 13 12 16 16 C 1.38811 * 119.99910 * 335.71454 * 14 13 12 17 17 N 1.31621 * 120.00316 * 340.61550 * 16 14 13 18 18 Si 1.86801 * 119.99878 * 160.61659 * 16 14 13 19 19 H 1.48499 * 109.47203 * 59.99913 * 18 16 14 20 20 H 1.48504 * 109.47102 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47278 * 299.99958 * 18 16 14 22 22 C 1.43423 * 118.72694 * 291.34404 * 13 12 10 23 23 C 1.55331 * 116.24035 * 89.35714 * 22 13 12 24 24 C 1.55197 * 108.97422 * 319.40453 * 23 22 13 25 25 O 1.39751 * 110.50442 * 322.32983 * 24 23 22 26 26 N 1.47062 * 103.86107 * 359.97438 * 4 3 2 27 27 C 1.33939 * 109.18144 * 0.02562 * 26 4 3 28 28 O 1.21581 * 123.04692 * 180.02562 * 27 26 4 29 29 H 1.09002 * 109.46939 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46766 * 299.97272 * 1 2 3 31 31 H 1.09000 * 109.47203 * 59.97586 * 1 2 3 32 32 H 1.08995 * 110.54764 * 61.40659 * 3 2 1 33 33 H 1.09000 * 110.54404 * 298.59394 * 3 2 1 34 34 H 0.97000 * 119.99959 * 0.02562 * 8 6 4 35 35 H 1.08997 * 109.47217 * 59.99961 * 9 8 6 36 36 H 1.09002 * 109.47280 * 300.00177 * 9 8 6 37 37 H 1.08998 * 109.98646 * 58.60216 * 12 10 9 38 38 H 1.09001 * 109.99050 * 297.23506 * 12 10 9 39 39 H 0.96990 * 120.00413 * 180.02562 * 17 16 14 40 40 H 1.09002 * 108.12700 * 327.60123 * 22 13 12 41 41 H 1.09001 * 107.96458 * 210.98712 * 22 13 12 42 42 H 1.09004 * 109.56965 * 79.27869 * 23 22 13 43 43 H 1.08993 * 109.57541 * 199.52382 * 23 22 13 44 44 H 1.08998 * 109.25458 * 82.48456 * 24 23 22 45 45 H 1.08996 * 109.25408 * 201.92543 * 24 23 22 46 46 H 0.97002 * 125.40752 * 179.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3171 1.1986 0.0000 4 6 3.7504 0.6327 -0.0007 5 1 4.2882 0.9459 0.8941 6 6 4.4900 1.0669 -1.2399 7 8 4.5378 0.3345 -2.2054 8 7 5.0982 2.2690 -1.2751 9 6 5.8176 2.6909 -2.4795 10 6 6.4113 4.0835 -2.2575 11 1 7.1256 4.0270 -1.4361 12 6 7.1271 4.4879 -3.4752 13 7 7.6467 5.8750 -3.2318 14 6 8.9907 6.1042 -3.1037 15 1 9.3946 7.0823 -3.3194 16 6 9.8338 5.0794 -2.6967 17 7 9.3405 4.0282 -2.0769 18 14 11.6687 5.1920 -3.0286 19 1 12.2198 6.3974 -2.3588 20 1 12.3430 3.9798 -2.4984 21 1 11.9020 5.2887 -4.4919 22 6 6.7086 6.9556 -3.1356 23 6 6.1521 7.2577 -1.7172 24 6 5.8685 5.9162 -0.9902 25 8 5.3618 4.9712 -1.8865 26 7 3.5538 -0.8247 -0.0003 27 6 2.2412 -1.0917 -0.0002 28 8 1.7947 -2.2225 0.0006 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5135 0.8903 31 1 -0.3633 0.5142 -0.8898 32 1 2.1406 1.7934 0.8961 33 1 2.1405 1.7934 -0.8962 34 1 5.0602 2.8546 -0.5027 35 1 5.1281 2.7198 -3.3232 36 1 6.6199 1.9837 -2.6900 37 1 6.4448 4.4894 -4.3252 38 1 7.9570 3.8067 -3.6633 39 1 9.9297 3.3123 -1.7922 40 1 5.8660 6.7325 -3.7900 41 1 7.1949 7.8572 -3.5081 42 1 6.8862 7.8314 -1.1515 43 1 5.2281 7.8296 -1.8016 44 1 6.7951 5.5389 -0.5577 45 1 5.1434 6.0851 -0.1941 46 1 4.2621 -1.4874 -0.0010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073726557.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:13 Heat of formation + Delta-G solvation = -77.136310 kcal Electronic energy + Delta-G solvation = -29074.582420 eV Core-core repulsion = 25000.272555 eV Total energy + Delta-G solvation = -4074.309864 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.40806 -40.86356 -40.00860 -37.41577 -36.77175 -35.98444 -35.08933 -33.84595 -32.99180 -30.86089 -29.96693 -28.28829 -27.03001 -26.96058 -24.92721 -23.92859 -22.36527 -21.63297 -21.51493 -21.24743 -19.08931 -18.78825 -18.64207 -17.65434 -17.50816 -17.00053 -16.60314 -16.59807 -16.25707 -15.95871 -15.63466 -15.51372 -15.20355 -15.03369 -14.83315 -14.58607 -14.48676 -14.17355 -13.93933 -13.56762 -13.42113 -13.26063 -13.19845 -12.98257 -12.87165 -12.59051 -12.49095 -12.29696 -11.90933 -11.74972 -11.56825 -11.37529 -11.32238 -11.14587 -10.53604 -10.43873 -10.22452 -10.09437 -9.59056 -8.69522 -7.88802 -5.28271 1.33535 1.48678 1.53179 1.57271 1.64227 1.85653 2.19524 2.53153 2.90933 3.14540 3.28748 3.29521 3.51509 3.61458 3.90867 4.12820 4.19999 4.31797 4.42059 4.45187 4.51014 4.56214 4.61127 4.73308 4.76660 4.82135 4.85620 4.87388 4.94156 5.00112 5.11830 5.22441 5.24452 5.38388 5.40546 5.46065 5.53662 5.62246 5.70044 5.99967 6.32938 6.38099 6.54436 6.56882 7.12781 7.18250 7.42833 7.85281 8.37503 9.16900 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019645 B = 0.002977 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.968389 B = 9404.049658 C =10362.191738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.637 5.637 3 C 0.108 3.892 4 C 0.111 3.889 5 H 0.160 0.840 6 C 0.498 3.502 7 O -0.580 6.580 8 N -0.694 5.694 9 C 0.133 3.867 10 C 0.082 3.918 11 H 0.087 0.913 12 C 0.143 3.857 13 N -0.602 5.602 14 C -0.264 4.264 15 H 0.061 0.939 16 C -0.033 4.033 17 N -0.914 5.914 18 Si 0.955 3.045 19 H -0.281 1.281 20 H -0.294 1.294 21 H -0.288 1.288 22 C 0.153 3.847 23 C -0.166 4.166 24 C 0.068 3.932 25 O -0.364 6.364 26 N -0.716 5.716 27 C 0.692 3.308 28 O -0.635 6.635 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.142 0.858 33 H 0.088 0.912 34 H 0.417 0.583 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.022 0.978 38 H 0.076 0.924 39 H 0.251 0.749 40 H 0.035 0.965 41 H 0.027 0.973 42 H 0.051 0.949 43 H 0.078 0.922 44 H 0.037 0.963 45 H 0.095 0.905 46 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.102 0.520 9.112 16.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.375 5.375 3 C -0.015 4.015 4 C 0.001 3.999 5 H 0.177 0.823 6 C 0.283 3.717 7 O -0.459 6.459 8 N -0.345 5.345 9 C 0.008 3.992 10 C 0.023 3.977 11 H 0.105 0.895 12 C 0.018 3.982 13 N -0.323 5.323 14 C -0.393 4.393 15 H 0.079 0.921 16 C -0.230 4.230 17 N -0.560 5.560 18 Si 0.785 3.215 19 H -0.207 1.207 20 H -0.220 1.220 21 H -0.215 1.215 22 C 0.025 3.975 23 C -0.206 4.206 24 C -0.010 4.010 25 O -0.282 6.282 26 N -0.376 5.376 27 C 0.392 3.608 28 O -0.517 6.517 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.093 0.907 32 H 0.160 0.840 33 H 0.106 0.894 34 H 0.254 0.746 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.040 0.960 38 H 0.094 0.906 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.055 0.945 45 H 0.113 0.887 46 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -14.574 -0.640 8.386 16.827 hybrid contribution 2.089 -0.030 -0.232 2.102 sum -12.485 -0.670 8.154 14.927 Atomic orbital electron populations 1.21639 0.74006 1.03542 1.03599 1.47212 1.07422 1.05490 1.77423 1.22561 0.84319 0.88149 1.06495 1.22108 0.98367 0.81868 0.97554 0.82251 1.21316 0.79219 0.81347 0.89796 1.90736 1.62110 1.54534 1.38530 1.45709 1.52672 1.17997 1.18128 1.21366 0.95320 0.94815 0.87702 1.21705 0.88237 0.86691 1.01091 0.89548 1.20679 0.96075 0.87300 0.94136 1.44213 1.02131 1.03489 1.82517 1.19341 0.83602 0.97636 1.38769 0.92129 1.25402 1.00834 0.98255 0.98495 1.69953 1.34950 1.10509 1.40589 0.85540 0.81849 0.76570 0.77559 1.20733 1.22015 1.21499 1.20503 0.91696 0.90367 0.94905 1.23493 1.00298 0.97924 0.98934 1.22438 0.98122 0.89025 0.91365 1.87514 1.33216 1.43300 1.64175 1.44899 1.06412 1.07483 1.78780 1.16141 0.82492 0.84768 0.77350 1.90900 1.76800 1.23056 1.60988 0.91398 0.88844 0.90687 0.84039 0.89420 0.74620 0.92497 0.92205 0.95989 0.90579 0.93948 0.94685 0.95455 0.92989 0.90301 0.94470 0.88743 0.72441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.57 11.22 127.77 1.43 3.00 16 2 N -0.64 -12.38 3.36 -863.43 -2.90 -15.28 16 3 C 0.11 1.39 7.32 86.65 0.63 2.02 16 4 C 0.11 1.84 4.17 44.51 0.19 2.02 16 5 H 0.16 1.33 8.14 -2.39 -0.02 1.31 16 6 C 0.50 12.67 6.93 87.66 0.61 13.27 16 7 O -0.58 -20.90 16.60 -3.03 -0.05 -20.95 16 8 N -0.69 -17.03 5.40 -463.07 -2.50 -19.53 16 9 C 0.13 4.37 5.27 86.38 0.45 4.83 16 10 C 0.08 2.97 2.01 28.71 0.06 3.03 16 11 H 0.09 3.59 5.25 -2.39 -0.01 3.58 16 12 C 0.14 6.16 4.71 83.79 0.39 6.56 16 13 N -0.60 -27.52 2.61 -706.00 -1.85 -29.37 16 14 C -0.26 -13.32 9.61 84.03 0.81 -12.51 16 15 H 0.06 3.09 7.87 -2.91 -0.02 3.07 16 16 C -0.03 -1.67 4.92 84.86 0.42 -1.26 16 17 N -0.91 -46.15 9.57 21.65 0.21 -45.94 16 18 Si 0.96 41.96 29.60 68.60 2.03 43.99 16 19 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 20 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 22 C 0.15 5.95 5.33 87.75 0.47 6.42 16 23 C -0.17 -5.29 6.74 32.15 0.22 -5.07 16 24 C 0.07 2.07 6.40 72.74 0.47 2.54 16 25 O -0.36 -11.74 9.33 -138.33 -1.29 -13.04 16 26 N -0.72 -16.38 5.63 -460.35 -2.59 -18.97 16 27 C 0.69 19.03 8.60 179.57 1.55 20.58 16 28 O -0.64 -23.06 17.29 -3.97 -0.07 -23.13 16 29 H 0.07 1.21 7.52 -2.39 -0.02 1.19 16 30 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.09 1.20 7.72 -2.39 -0.02 1.18 16 34 H 0.42 7.87 8.19 -92.71 -0.76 7.12 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 3.71 6.03 -2.39 -0.01 3.70 16 39 H 0.25 12.60 8.31 -92.72 -0.77 11.83 16 40 H 0.03 1.32 7.99 -2.39 -0.02 1.30 16 41 H 0.03 1.07 7.95 -2.39 -0.02 1.05 16 42 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.04 1.35 6.67 -2.39 -0.02 1.34 16 45 H 0.09 2.14 8.14 -2.39 -0.02 2.13 16 46 H 0.43 9.65 8.96 -92.71 -0.83 8.82 16 Total: -1.00 -72.18 367.82 -1.90 -74.07 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: -0.57 Total: 22.71 kcal Atomic # 6 Polarization: 37.75 SS G_CDS: 7.69 Total: 45.43 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -9.63 Total: -129.08 kcal Atomic # 8 Polarization: -55.71 SS G_CDS: -1.41 Total: -57.12 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -72.18 -1.90 -74.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073726557.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.065 kcal (2) G-P(sol) polarization free energy of solvation -72.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds