Wall clock time and date at job start Fri Apr 10 2020 18:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99875 * 2 1 4 4 H 1.08998 * 110.91622 * 26.09472 * 3 2 1 5 5 C 1.55122 * 111.16283 * 262.16785 * 3 2 1 6 6 N 1.47422 * 104.94731 * 205.13247 * 5 3 2 7 7 C 1.36936 * 125.64999 * 203.96891 * 6 5 3 8 8 H 1.08004 * 119.99897 * 180.02562 * 7 6 5 9 9 C 1.38810 * 120.00256 * 0.04180 * 7 6 5 10 10 N 1.31620 * 119.99605 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00229 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47351 * 89.99725 * 11 9 7 13 13 H 1.48494 * 109.47266 * 210.00033 * 11 9 7 14 14 H 1.48505 * 109.47008 * 329.99902 * 11 9 7 15 15 C 1.47024 * 108.69925 * 24.00324 * 6 5 3 16 16 C 1.54322 * 107.27214 * 358.94095 * 15 6 5 17 17 H 1.09006 * 110.71995 * 96.34967 * 16 15 6 18 18 N 1.46496 * 110.72214 * 219.44037 * 16 15 6 19 19 C 1.34777 * 120.00258 * 271.16264 * 18 16 15 20 20 O 1.21279 * 120.00166 * 359.97438 * 19 18 16 21 21 C 1.50706 * 119.99762 * 179.97438 * 19 18 16 22 22 C 1.53002 * 109.46925 * 179.97438 * 21 19 18 23 23 H 1.09007 * 110.55130 * 303.57584 * 22 21 19 24 24 C 1.54988 * 110.62030 * 180.52388 * 22 21 19 25 25 C 1.54805 * 102.09658 * 204.47183 * 24 22 21 26 26 C 1.52998 * 110.49194 * 262.20685 * 25 24 22 27 27 C 1.52998 * 110.60235 * 139.61121 * 25 24 22 28 28 C 1.54104 * 104.18575 * 20.87965 * 25 24 22 29 29 O 1.43748 * 107.29339 * 2.03007 * 28 25 24 30 30 H 1.08999 * 109.46947 * 59.99905 * 1 2 3 31 31 H 1.08995 * 109.46882 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46668 * 300.00247 * 1 2 3 33 33 H 1.09005 * 110.41847 * 86.19901 * 5 3 2 34 34 H 1.09006 * 110.30165 * 324.00680 * 5 3 2 35 35 H 0.97001 * 120.00045 * 180.02562 * 10 9 7 36 36 H 1.08995 * 109.88272 * 239.52092 * 15 6 5 37 37 H 1.09006 * 110.00864 * 118.42925 * 15 6 5 38 38 H 0.96999 * 119.99694 * 91.15654 * 18 16 15 39 39 H 1.09000 * 109.47318 * 299.99141 * 21 19 18 40 40 H 1.09000 * 109.47161 * 59.99772 * 21 19 18 41 41 H 1.08997 * 110.90632 * 322.67374 * 24 22 21 42 42 H 1.09006 * 110.90760 * 86.27175 * 24 22 21 43 43 H 1.08997 * 109.47126 * 176.21947 * 26 25 24 44 44 H 1.08998 * 109.46762 * 296.21845 * 26 25 24 45 45 H 1.08998 * 109.47182 * 56.21757 * 26 25 24 46 46 H 1.09006 * 109.47230 * 303.71462 * 27 25 24 47 47 H 1.08997 * 109.47590 * 63.71517 * 27 25 24 48 48 H 1.09004 * 109.47180 * 183.71690 * 27 25 24 49 49 H 1.08994 * 109.87945 * 242.60743 * 28 25 24 50 50 H 1.09006 * 110.00328 * 121.52129 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3332 2.0328 0.4478 5 6 2.4181 1.7369 -1.4331 6 7 3.4967 2.7233 -1.2408 7 6 3.8525 3.7007 -2.1314 8 1 4.6610 4.3772 -1.8963 9 6 3.1741 3.8222 -3.3363 10 7 2.1890 2.9976 -3.6229 11 14 3.6599 5.1550 -4.5516 12 1 4.6979 4.6291 -5.4742 13 1 2.4677 5.5708 -5.3331 14 1 4.2006 6.3247 -3.8134 15 6 4.1276 2.4832 0.0654 16 6 3.3824 1.3033 0.7242 17 1 3.9106 0.3664 0.5470 18 7 3.2108 1.5357 2.1604 19 6 4.1628 1.1351 3.0263 20 8 5.1612 0.5818 2.6167 21 6 3.9864 1.3747 4.5038 22 6 5.2004 0.8277 5.2575 23 1 5.3456 -0.2291 5.0335 24 6 5.0406 1.0487 6.7832 25 6 6.5113 1.0521 7.2663 26 6 6.8986 -0.3233 7.8132 27 6 6.7258 2.1300 8.3308 28 6 7.3246 1.3769 5.9983 29 8 6.3856 1.5843 4.9299 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.5729 2.1943 -1.9476 34 1 2.7848 0.8787 -1.9965 35 1 1.7151 3.0823 -4.4650 36 1 4.0385 3.3726 0.6891 37 1 5.1789 2.2289 -0.0694 38 1 2.4122 1.9779 2.4881 39 1 3.8947 2.4447 4.6899 40 1 3.0858 0.8672 4.8492 41 1 4.5611 2.0056 6.9895 42 1 4.4834 0.2299 7.2386 43 1 7.9539 -0.3218 8.0859 44 1 6.2961 -0.5470 8.6936 45 1 6.7216 -1.0808 7.0498 46 1 6.4272 3.0994 7.9316 47 1 6.1240 1.8980 9.2094 48 1 7.7791 2.1607 8.6097 49 1 7.9828 0.5425 5.7564 50 1 7.9138 2.2805 6.1545 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081935102.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:41 Heat of formation + Delta-G solvation = -104.606957 kcal Electronic energy + Delta-G solvation = -28803.488361 eV Core-core repulsion = 24831.527624 eV Total energy + Delta-G solvation = -3971.960738 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.33372 -39.34678 -37.96333 -35.88336 -34.78181 -33.92992 -32.46400 -31.60182 -28.90214 -27.89665 -27.69743 -26.69988 -26.07179 -25.92968 -24.17172 -21.94056 -20.66634 -20.37426 -19.82379 -19.49261 -17.41554 -16.81191 -16.60273 -16.14275 -15.79404 -15.38569 -15.31207 -14.75506 -14.53587 -14.34747 -14.25140 -14.05417 -13.85455 -13.63612 -13.43598 -13.14823 -12.87860 -12.80820 -12.22444 -12.20397 -12.07140 -11.85161 -11.77389 -11.55859 -11.36728 -11.24899 -11.03723 -11.00641 -10.95398 -10.81324 -10.79545 -10.71619 -10.17314 -9.87656 -9.79314 -9.64185 -9.56576 -9.01225 -8.67918 -8.57913 -6.86896 -5.67260 -3.09934 2.93764 3.36625 3.41086 3.45772 3.47645 3.74624 4.11545 4.14765 4.38270 4.51473 4.54441 4.73545 4.82984 4.97785 4.99946 5.14864 5.23353 5.29392 5.31158 5.35642 5.37922 5.44947 5.50157 5.51115 5.55529 5.60010 5.62482 5.63397 5.71608 5.73817 5.78416 5.84119 5.86898 5.88883 5.95098 5.99931 6.13136 6.26622 6.56942 6.75969 6.87474 6.96968 7.28566 7.58645 7.74351 7.77787 7.84256 8.29409 8.54442 9.18775 9.79059 10.42027 11.36642 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017107 B = 0.002647 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.408773 B =10575.174403 C =11810.464877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.054 3.946 4 H 0.066 0.934 5 C 0.142 3.858 6 N -0.601 5.601 7 C -0.220 4.220 8 H 0.080 0.920 9 C -0.012 4.012 10 N -0.924 5.924 11 Si 0.917 3.083 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.131 3.869 16 C 0.137 3.863 17 H 0.100 0.900 18 N -0.720 5.720 19 C 0.512 3.488 20 O -0.527 6.527 21 C -0.137 4.137 22 C 0.096 3.904 23 H 0.076 0.924 24 C -0.143 4.143 25 C -0.102 4.102 26 C -0.139 4.139 27 C -0.136 4.136 28 C 0.054 3.946 29 O -0.356 6.356 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.033 0.967 33 H 0.112 0.888 34 H 0.026 0.974 35 H 0.253 0.747 36 H 0.029 0.971 37 H 0.033 0.967 38 H 0.395 0.605 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.057 0.943 48 H 0.057 0.943 49 H 0.058 0.942 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.284 -4.890 24.236 24.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.298 6.298 3 C -0.005 4.005 4 H 0.084 0.916 5 C 0.016 3.984 6 N -0.329 5.329 7 C -0.349 4.349 8 H 0.098 0.902 9 C -0.207 4.207 10 N -0.573 5.573 11 Si 0.748 3.252 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.206 1.206 15 C 0.004 3.996 16 C 0.032 3.968 17 H 0.118 0.882 18 N -0.371 5.371 19 C 0.298 3.702 20 O -0.403 6.403 21 C -0.177 4.177 22 C 0.038 3.962 23 H 0.094 0.906 24 C -0.181 4.181 25 C -0.102 4.102 26 C -0.196 4.196 27 C -0.193 4.193 28 C -0.024 4.024 29 O -0.275 6.275 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.051 0.949 33 H 0.130 0.870 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.051 0.949 38 H 0.229 0.771 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.076 0.924 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.110 -5.258 23.540 24.146 hybrid contribution -0.359 0.958 -0.293 1.064 sum 0.751 -4.300 23.247 23.653 Atomic orbital electron populations 1.22701 0.81715 1.01882 0.99872 1.87853 1.19109 1.27800 1.95069 1.24067 0.92692 0.83641 1.00125 0.91559 1.22317 0.94550 0.92073 0.89444 1.44311 1.37094 1.35639 1.15817 1.19107 1.13610 1.06173 0.95963 0.90202 1.24804 0.98560 0.99444 0.97885 1.69757 1.24575 1.38891 1.24045 0.86027 0.77308 0.80917 0.80990 1.21532 1.21657 1.20648 1.21601 0.95868 0.94127 0.88018 1.22125 0.96514 1.00074 0.78129 0.88168 1.46018 1.22531 1.61405 1.07134 1.20424 0.83093 0.78564 0.88113 1.90731 1.28311 1.41683 1.79541 1.21756 0.98899 1.04211 0.92802 1.22780 0.85358 0.96241 0.91853 0.90585 1.23330 0.96081 1.03107 0.95571 1.21948 0.95351 0.96624 0.96281 1.21876 1.01514 0.95252 1.00973 1.21839 1.01785 0.97864 0.97854 1.23295 0.92246 1.01326 0.85496 1.89022 1.25798 1.69719 1.42977 0.93557 0.90352 0.94863 0.87045 0.95625 0.93641 0.95284 0.94885 0.77114 0.88162 0.87765 0.90176 0.90082 0.92292 0.92304 0.92240 0.92169 0.92403 0.92392 0.92419 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.85 101.05 1.10 1.59 16 2 O -0.38 -7.02 10.52 -35.23 -0.37 -7.39 16 3 C 0.05 1.06 3.17 -24.47 -0.08 0.98 16 4 H 0.07 1.19 7.69 -51.93 -0.40 0.79 16 5 C 0.14 3.52 5.63 -2.41 -0.01 3.50 16 6 N -0.60 -15.81 3.40 -169.93 -0.58 -16.39 16 7 C -0.22 -6.24 10.27 -15.06 -0.15 -6.40 16 8 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 9 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 10 N -0.92 -26.91 10.09 55.49 0.56 -26.35 16 11 Si 0.92 22.23 29.55 -169.99 -5.02 17.20 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 C 0.13 2.96 7.00 -3.06 -0.02 2.94 16 16 C 0.14 2.66 3.00 -66.10 -0.20 2.46 16 17 H 0.10 2.17 7.62 -51.93 -0.40 1.78 16 18 N -0.72 -11.03 5.12 -52.03 -0.27 -11.30 16 19 C 0.51 8.00 7.74 -10.98 -0.08 7.92 16 20 O -0.53 -10.61 15.25 -5.83 -0.09 -10.70 16 21 C -0.14 -1.45 5.48 -27.88 -0.15 -1.60 16 22 C 0.10 1.08 2.80 -25.68 -0.07 1.00 16 23 H 0.08 0.93 8.03 -51.93 -0.42 0.52 16 24 C -0.14 -1.12 5.70 -24.73 -0.14 -1.26 16 25 C -0.10 -0.79 0.99 -152.98 -0.15 -0.94 16 26 C -0.14 -0.93 8.25 37.16 0.31 -0.62 16 27 C -0.14 -0.88 8.27 37.16 0.31 -0.57 16 28 C 0.05 0.56 7.03 37.73 0.27 0.82 16 29 O -0.36 -5.04 10.61 -46.62 -0.49 -5.53 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 33 H 0.11 3.02 5.87 -51.93 -0.31 2.72 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.03 0.64 8.03 -51.93 -0.42 0.23 16 37 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.40 4.80 8.54 -40.82 -0.35 4.45 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.58 7.79 -51.93 -0.40 0.17 16 42 H 0.08 0.52 7.86 -51.93 -0.41 0.11 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.06 0.60 7.69 -51.93 -0.40 0.20 16 50 H 0.08 0.78 7.70 -51.93 -0.40 0.38 16 LS Contribution 396.31 15.07 5.97 5.97 Total: -1.00 -34.31 396.31 -8.41 -42.72 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -8.93 Total: 2.37 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 0.81 Total: 9.40 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.28 Total: -54.03 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.95 Total: -23.63 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.31 -8.41 -42.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081935102.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.890 kcal (2) G-P(sol) polarization free energy of solvation -34.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds