Wall clock time and date at job start Fri Apr 10 2020 18:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99875 * 2 1 4 4 H 1.08998 * 110.91622 * 26.09472 * 3 2 1 5 5 C 1.55122 * 111.16283 * 262.16785 * 3 2 1 6 6 N 1.47422 * 104.94731 * 205.13247 * 5 3 2 7 7 C 1.36936 * 125.64999 * 203.96891 * 6 5 3 8 8 H 1.08004 * 119.99897 * 180.02562 * 7 6 5 9 9 C 1.38810 * 120.00256 * 0.04180 * 7 6 5 10 10 N 1.31620 * 119.99605 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00229 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47351 * 89.99725 * 11 9 7 13 13 H 1.48494 * 109.47266 * 210.00033 * 11 9 7 14 14 H 1.48505 * 109.47008 * 329.99902 * 11 9 7 15 15 C 1.47024 * 108.69925 * 24.00324 * 6 5 3 16 16 C 1.54322 * 107.27214 * 358.94095 * 15 6 5 17 17 H 1.09006 * 110.71995 * 96.34967 * 16 15 6 18 18 N 1.46496 * 110.72214 * 219.44037 * 16 15 6 19 19 C 1.34777 * 120.00258 * 271.16264 * 18 16 15 20 20 O 1.21279 * 120.00166 * 359.97438 * 19 18 16 21 21 C 1.50706 * 119.99762 * 179.97438 * 19 18 16 22 22 C 1.53002 * 109.46925 * 179.97438 * 21 19 18 23 23 H 1.09007 * 110.55130 * 303.57584 * 22 21 19 24 24 C 1.54988 * 110.62030 * 180.52388 * 22 21 19 25 25 C 1.54805 * 102.09658 * 204.47183 * 24 22 21 26 26 C 1.52998 * 110.49194 * 262.20685 * 25 24 22 27 27 C 1.52998 * 110.60235 * 139.61121 * 25 24 22 28 28 C 1.54104 * 104.18575 * 20.87965 * 25 24 22 29 29 O 1.43748 * 107.29339 * 2.03007 * 28 25 24 30 30 H 1.08999 * 109.46947 * 59.99905 * 1 2 3 31 31 H 1.08995 * 109.46882 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46668 * 300.00247 * 1 2 3 33 33 H 1.09005 * 110.41847 * 86.19901 * 5 3 2 34 34 H 1.09006 * 110.30165 * 324.00680 * 5 3 2 35 35 H 0.97001 * 120.00045 * 180.02562 * 10 9 7 36 36 H 1.08995 * 109.88272 * 239.52092 * 15 6 5 37 37 H 1.09006 * 110.00864 * 118.42925 * 15 6 5 38 38 H 0.96999 * 119.99694 * 91.15654 * 18 16 15 39 39 H 1.09000 * 109.47318 * 299.99141 * 21 19 18 40 40 H 1.09000 * 109.47161 * 59.99772 * 21 19 18 41 41 H 1.08997 * 110.90632 * 322.67374 * 24 22 21 42 42 H 1.09006 * 110.90760 * 86.27175 * 24 22 21 43 43 H 1.08997 * 109.47126 * 176.21947 * 26 25 24 44 44 H 1.08998 * 109.46762 * 296.21845 * 26 25 24 45 45 H 1.08998 * 109.47182 * 56.21757 * 26 25 24 46 46 H 1.09006 * 109.47230 * 303.71462 * 27 25 24 47 47 H 1.08997 * 109.47590 * 63.71517 * 27 25 24 48 48 H 1.09004 * 109.47180 * 183.71690 * 27 25 24 49 49 H 1.08994 * 109.87945 * 242.60743 * 28 25 24 50 50 H 1.09006 * 110.00328 * 121.52129 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3332 2.0328 0.4478 5 6 2.4181 1.7369 -1.4331 6 7 3.4967 2.7233 -1.2408 7 6 3.8525 3.7007 -2.1314 8 1 4.6610 4.3772 -1.8963 9 6 3.1741 3.8222 -3.3363 10 7 2.1890 2.9976 -3.6229 11 14 3.6599 5.1550 -4.5516 12 1 4.6979 4.6291 -5.4742 13 1 2.4677 5.5708 -5.3331 14 1 4.2006 6.3247 -3.8134 15 6 4.1276 2.4832 0.0654 16 6 3.3824 1.3033 0.7242 17 1 3.9106 0.3664 0.5470 18 7 3.2108 1.5357 2.1604 19 6 4.1628 1.1351 3.0263 20 8 5.1612 0.5818 2.6167 21 6 3.9864 1.3747 4.5038 22 6 5.2004 0.8277 5.2575 23 1 5.3456 -0.2291 5.0335 24 6 5.0406 1.0487 6.7832 25 6 6.5113 1.0521 7.2663 26 6 6.8986 -0.3233 7.8132 27 6 6.7258 2.1300 8.3308 28 6 7.3246 1.3769 5.9983 29 8 6.3856 1.5843 4.9299 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.5729 2.1943 -1.9476 34 1 2.7848 0.8787 -1.9965 35 1 1.7151 3.0823 -4.4650 36 1 4.0385 3.3726 0.6891 37 1 5.1789 2.2289 -0.0694 38 1 2.4122 1.9779 2.4881 39 1 3.8947 2.4447 4.6899 40 1 3.0858 0.8672 4.8492 41 1 4.5611 2.0056 6.9895 42 1 4.4834 0.2299 7.2386 43 1 7.9539 -0.3218 8.0859 44 1 6.2961 -0.5470 8.6936 45 1 6.7216 -1.0808 7.0498 46 1 6.4272 3.0994 7.9316 47 1 6.1240 1.8980 9.2094 48 1 7.7791 2.1607 8.6097 49 1 7.9828 0.5425 5.7564 50 1 7.9138 2.2805 6.1545 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081935102.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:40 Heat of formation + Delta-G solvation = -129.013585 kcal Electronic energy + Delta-G solvation = -28804.546712 eV Core-core repulsion = 24831.527624 eV Total energy + Delta-G solvation = -3973.019089 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.33225 -40.58427 -39.43956 -37.52594 -35.64040 -35.43737 -33.82420 -33.09613 -30.63494 -29.19901 -28.23271 -27.98136 -27.47272 -26.75602 -25.95046 -23.04825 -22.36825 -21.76803 -21.21568 -20.26976 -19.15769 -18.21581 -17.94031 -17.27244 -17.16162 -16.73879 -16.33195 -16.14113 -15.89084 -15.72435 -15.51555 -15.21755 -14.94952 -14.72047 -14.44864 -14.31205 -14.16654 -13.91858 -13.75309 -13.53967 -13.19455 -13.09629 -12.84191 -12.74775 -12.67706 -12.54560 -12.43114 -12.33569 -12.24070 -12.05230 -11.91688 -11.67590 -11.57926 -11.55551 -11.47182 -10.91888 -10.81113 -10.54836 -10.48850 -10.06462 -8.99258 -7.82443 -5.30044 1.45837 1.48519 1.57196 1.71737 2.11053 2.44157 2.74957 2.97020 3.28064 3.47147 3.59172 3.65761 3.78945 3.89969 3.92100 3.96277 4.04329 4.07459 4.22347 4.34480 4.39416 4.46047 4.49537 4.61300 4.62279 4.66353 4.67834 4.78878 4.80356 4.82112 4.83574 4.88859 4.89197 4.97184 5.04739 5.05757 5.16209 5.24211 5.28090 5.32871 5.42515 5.45520 5.49076 5.66851 6.06549 6.17745 6.31287 6.60499 7.03110 7.33938 7.67257 8.30108 9.19053 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017107 B = 0.002647 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.408773 B =10575.174403 C =11810.464877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.079 3.921 4 H 0.093 0.907 5 C 0.146 3.854 6 N -0.619 5.619 7 C -0.245 4.245 8 H 0.081 0.919 9 C -0.062 4.062 10 N -0.947 5.947 11 Si 0.985 3.015 12 H -0.289 1.289 13 H -0.287 1.287 14 H -0.268 1.268 15 C 0.133 3.867 16 C 0.153 3.847 17 H 0.073 0.927 18 N -0.706 5.706 19 C 0.507 3.493 20 O -0.579 6.579 21 C -0.125 4.125 22 C 0.086 3.914 23 H 0.056 0.944 24 C -0.131 4.131 25 C -0.098 4.098 26 C -0.137 4.137 27 C -0.133 4.133 28 C 0.045 3.955 29 O -0.396 6.396 30 H 0.035 0.965 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.089 0.911 34 H -0.014 1.014 35 H 0.251 0.749 36 H 0.040 0.960 37 H 0.009 0.991 38 H 0.416 0.584 39 H 0.121 0.879 40 H 0.147 0.853 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.047 0.953 46 H 0.055 0.945 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.047 0.953 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.299 -4.111 27.176 27.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.314 6.314 3 C 0.020 3.980 4 H 0.111 0.889 5 C 0.020 3.980 6 N -0.346 5.346 7 C -0.373 4.373 8 H 0.099 0.901 9 C -0.255 4.255 10 N -0.597 5.597 11 Si 0.813 3.187 12 H -0.216 1.216 13 H -0.213 1.213 14 H -0.193 1.193 15 C 0.006 3.994 16 C 0.046 3.954 17 H 0.092 0.908 18 N -0.359 5.359 19 C 0.295 3.705 20 O -0.458 6.458 21 C -0.164 4.164 22 C 0.028 3.972 23 H 0.074 0.926 24 C -0.169 4.169 25 C -0.098 4.098 26 C -0.195 4.195 27 C -0.190 4.190 28 C -0.032 4.032 29 O -0.316 6.316 30 H 0.053 0.947 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.004 0.996 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.027 0.973 38 H 0.253 0.747 39 H 0.139 0.861 40 H 0.164 0.836 41 H 0.112 0.888 42 H 0.120 0.880 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.091 0.909 48 H 0.080 0.920 49 H 0.066 0.934 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.504 -4.474 26.533 26.912 hybrid contribution 0.173 0.648 -1.246 1.415 sum -0.331 -3.826 25.287 25.576 Atomic orbital electron populations 1.23001 0.79197 1.03936 1.00807 1.87846 1.21848 1.26810 1.94936 1.23618 0.93158 0.84917 0.96333 0.88932 1.22101 0.93150 0.90189 0.92574 1.44566 1.37892 1.35420 1.16765 1.19452 1.13981 1.06888 0.97008 0.90145 1.25674 0.98599 1.01691 0.99511 1.69994 1.25263 1.40192 1.24204 0.84983 0.76831 0.78492 0.78417 1.21617 1.21316 1.19267 1.21651 0.94832 0.95799 0.87137 1.21574 0.95748 0.97369 0.80673 0.90844 1.45815 1.23568 1.61459 1.05038 1.21431 0.81875 0.76999 0.90162 1.90718 1.30449 1.43935 1.80721 1.21856 1.00316 1.06005 0.88251 1.22935 0.84821 0.95004 0.94415 0.92576 1.23305 0.96297 1.04635 0.92635 1.21946 0.94921 0.97650 0.95303 1.21870 1.02121 0.94285 1.01180 1.21815 1.02406 0.97020 0.97752 1.23464 0.92268 1.01168 0.86314 1.88981 1.27390 1.70275 1.44957 0.94655 0.87876 0.91801 0.89366 0.99614 0.93961 0.94202 0.97333 0.74682 0.86103 0.83561 0.88799 0.87985 0.91995 0.90602 0.93369 0.92556 0.90878 0.92043 0.93444 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.85 113.37 1.23 1.92 16 2 O -0.40 -14.29 10.52 -148.98 -1.57 -15.86 16 3 C 0.08 3.07 3.17 32.06 0.10 3.17 16 4 H 0.09 3.11 7.69 -2.39 -0.02 3.10 16 5 C 0.15 7.50 5.63 86.93 0.49 7.99 16 6 N -0.62 -33.63 3.40 -691.55 -2.35 -35.97 16 7 C -0.24 -14.20 10.27 84.03 0.86 -13.34 16 8 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 9 C -0.06 -3.56 5.49 84.86 0.47 -3.10 16 10 N -0.95 -56.63 10.09 21.65 0.22 -56.41 16 11 Si 0.99 46.14 29.55 68.60 2.03 48.17 16 12 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 13 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 15 C 0.13 6.17 7.00 86.73 0.61 6.77 16 16 C 0.15 6.02 3.00 46.18 0.14 6.16 16 17 H 0.07 3.32 7.62 -2.38 -0.02 3.30 16 18 N -0.71 -20.56 5.12 -436.92 -2.24 -22.80 16 19 C 0.51 15.35 7.74 87.66 0.68 16.03 16 20 O -0.58 -23.97 15.25 7.87 0.12 -23.85 16 21 C -0.13 -2.30 5.48 29.85 0.16 -2.13 16 22 C 0.09 1.82 2.80 31.28 0.09 1.91 16 23 H 0.06 1.38 8.03 -2.38 -0.02 1.36 16 24 C -0.13 -1.66 5.70 31.89 0.18 -1.48 16 25 C -0.10 -1.34 0.99 -51.19 -0.05 -1.39 16 26 C -0.14 -1.59 8.25 71.98 0.59 -1.00 16 27 C -0.13 -1.37 8.27 71.98 0.60 -0.77 16 28 C 0.04 0.93 7.03 72.36 0.51 1.44 16 29 O -0.40 -11.25 10.61 -138.09 -1.47 -12.72 16 30 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.10 2.19 8.14 -2.39 -0.02 2.18 16 32 H 0.06 1.30 8.12 -2.39 -0.02 1.28 16 33 H 0.09 4.96 5.87 -2.38 -0.01 4.94 16 34 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 35 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 36 H 0.04 1.76 8.03 -2.39 -0.02 1.75 16 37 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 38 H 0.42 8.73 8.54 -92.71 -0.79 7.93 16 39 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.15 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.09 0.97 7.79 -2.39 -0.02 0.95 16 42 H 0.10 0.89 7.86 -2.38 -0.02 0.87 16 43 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 47 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.05 1.03 7.69 -2.39 -0.02 1.01 16 50 H 0.08 1.62 7.70 -2.38 -0.02 1.60 16 Total: -1.00 -79.44 396.31 1.52 -77.92 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.12 Total: 19.34 kcal Atomic # 6 Polarization: 15.52 SS G_CDS: 6.65 Total: 22.18 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -4.37 Total: -115.18 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: -2.91 Total: -52.42 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -79.44 1.52 -77.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081935102.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.098 kcal (2) G-P(sol) polarization free energy of solvation -79.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds