Wall clock time and date at job start Fri Apr 10 2020 18:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42907 * 113.99910 * 2 1 4 4 H 1.09005 * 110.91424 * 26.09649 * 3 2 1 5 5 C 1.54904 * 111.00471 * 262.19582 * 3 2 1 6 6 N 1.47423 * 104.83359 * 204.91511 * 5 3 2 7 7 C 1.36941 * 125.65063 * 204.16459 * 6 5 3 8 8 H 1.07998 * 119.99961 * 179.97438 * 7 6 5 9 9 C 1.38812 * 119.99864 * 359.95462 * 7 6 5 10 10 N 1.31619 * 119.99815 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99884 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.46930 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47151 * 120.00101 * 11 9 7 14 14 H 1.48498 * 109.47049 * 240.00510 * 11 9 7 15 15 C 1.47020 * 108.70295 * 24.12894 * 6 5 3 16 16 C 1.54328 * 107.26954 * 358.94030 * 15 6 5 17 17 H 1.08995 * 110.72188 * 96.35198 * 16 15 6 18 18 N 1.46508 * 110.71999 * 219.44475 * 16 15 6 19 19 C 1.34767 * 120.00088 * 273.54512 * 18 16 15 20 20 O 1.21284 * 120.00304 * 359.97438 * 19 18 16 21 21 C 1.50707 * 120.00202 * 179.97438 * 19 18 16 22 22 C 1.52995 * 109.47098 * 179.97438 * 21 19 18 23 23 H 1.09003 * 110.27485 * 52.91503 * 22 21 19 24 24 C 1.54947 * 110.30771 * 174.99959 * 22 21 19 25 25 C 1.55306 * 100.97824 * 155.34129 * 24 22 21 26 26 C 1.53005 * 110.84794 * 84.08385 * 25 24 22 27 27 C 1.53007 * 110.84805 * 207.69876 * 25 24 22 28 28 C 1.54429 * 102.23000 * 325.92130 * 25 24 22 29 29 O 1.43234 * 107.60919 * 21.29662 * 28 25 24 30 30 H 1.08997 * 109.47084 * 300.00190 * 1 2 3 31 31 H 1.09004 * 109.46717 * 60.00146 * 1 2 3 32 32 H 1.08996 * 109.46627 * 179.97438 * 1 2 3 33 33 H 1.09001 * 110.36879 * 86.07834 * 5 3 2 34 34 H 1.09003 * 110.36931 * 323.75374 * 5 3 2 35 35 H 0.97003 * 119.99205 * 180.02562 * 10 9 7 36 36 H 1.09008 * 109.88549 * 239.52837 * 15 6 5 37 37 H 1.08993 * 110.01610 * 118.43040 * 15 6 5 38 38 H 0.96997 * 119.99553 * 93.54846 * 18 16 15 39 39 H 1.08995 * 109.46260 * 60.00239 * 21 19 18 40 40 H 1.08992 * 109.46601 * 300.00374 * 21 19 18 41 41 H 1.09002 * 111.12777 * 273.28398 * 24 22 21 42 42 H 1.08995 * 111.12300 * 37.40291 * 24 22 21 43 43 H 1.09005 * 109.46894 * 59.99398 * 26 25 24 44 44 H 1.08999 * 109.47144 * 179.97438 * 26 25 24 45 45 H 1.08997 * 109.46821 * 299.99773 * 26 25 24 46 46 H 1.09002 * 109.46597 * 59.99831 * 27 25 24 47 47 H 1.08991 * 109.46992 * 180.02562 * 27 25 24 48 48 H 1.09004 * 109.46768 * 300.00490 * 27 25 24 49 49 H 1.09007 * 109.79290 * 261.79697 * 28 25 24 50 50 H 1.09005 * 109.85163 * 140.83519 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3331 2.0329 0.4479 5 6 2.4155 1.7329 -1.4327 6 7 3.4909 2.7230 -1.2413 7 6 3.8421 3.7021 -2.1319 8 1 4.6479 4.3818 -1.8971 9 6 3.1627 3.8208 -3.3366 10 7 2.1806 2.9924 -3.6225 11 14 3.6423 5.1559 -4.5518 12 1 4.7678 5.9498 -3.9962 13 1 4.0606 4.5323 -5.8328 14 1 2.4794 6.0477 -4.7917 15 6 4.1232 2.4856 0.0646 16 6 3.3824 1.3034 0.7243 17 1 3.9135 0.3683 0.5472 18 7 3.2107 1.5358 2.1606 19 6 4.1854 1.1823 3.0216 20 8 5.2044 0.6714 2.6075 21 6 4.0091 1.4219 4.4990 22 6 5.2512 0.9331 5.2467 23 1 6.1495 1.3769 4.8174 24 6 5.1452 1.2835 6.7523 25 6 6.0740 0.2047 7.3731 26 6 7.5359 0.6542 7.3293 27 6 5.6463 -0.1233 8.8051 28 6 5.8425 -1.0031 6.4391 29 8 5.3296 -0.5004 5.1998 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.5686 2.1874 -1.9469 34 1 2.7853 0.8750 -1.9943 35 1 1.7062 3.0752 -4.4646 36 1 4.0314 3.3750 0.6882 37 1 5.1753 2.2348 -0.0705 38 1 2.3955 1.9440 2.4917 39 1 3.1342 0.8770 4.8534 40 1 3.8713 2.4878 4.6802 41 1 5.5220 2.2871 6.9496 42 1 4.1215 1.1736 7.1100 43 1 7.6482 1.5806 7.8928 44 1 8.1667 -0.1176 7.7701 45 1 7.8340 0.8203 6.2941 46 1 4.6237 -0.5006 8.8015 47 1 6.3121 -0.8807 9.2186 48 1 5.6987 0.7784 9.4155 49 1 5.1203 -1.6845 6.8889 50 1 6.7848 -1.5229 6.2657 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081935103.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:45 Heat of formation + Delta-G solvation = -104.697956 kcal Electronic energy + Delta-G solvation = -28795.956267 eV Core-core repulsion = 24823.991583 eV Total energy + Delta-G solvation = -3971.964684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.37660 -39.35696 -37.96544 -35.87936 -34.76299 -33.93211 -32.47329 -31.61759 -28.90805 -27.92172 -27.70414 -26.74299 -26.09636 -26.00091 -24.16765 -21.85596 -20.68834 -20.41698 -19.85087 -19.44936 -17.40984 -16.90161 -16.55532 -16.25479 -15.81889 -15.39944 -15.07817 -14.84357 -14.60715 -14.44975 -14.27455 -14.11904 -13.67561 -13.51240 -13.47788 -13.16700 -12.93649 -12.77702 -12.31529 -12.21635 -12.10672 -11.92455 -11.78131 -11.59355 -11.37005 -11.25515 -11.07348 -11.02296 -11.00246 -10.83745 -10.73827 -10.71000 -10.15650 -9.87672 -9.80810 -9.57010 -9.54294 -8.99335 -8.69557 -8.58655 -6.88115 -5.68462 -3.11304 2.94695 3.36670 3.39630 3.44876 3.47472 3.67998 4.02888 4.15610 4.37137 4.49520 4.52491 4.73624 4.81600 4.94481 4.97622 5.18320 5.22396 5.25947 5.32040 5.34950 5.36467 5.44093 5.48789 5.51359 5.52775 5.59945 5.61655 5.64433 5.71828 5.73756 5.74949 5.81195 5.87504 5.89538 5.96480 6.03852 6.13265 6.26882 6.56232 6.73374 6.96107 6.99332 7.28783 7.57644 7.73796 7.78776 7.84347 8.28302 8.55165 9.17439 9.77797 10.40732 11.35412 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019266 B = 0.002558 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.964856 B =10944.305280 C =11977.804949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.055 3.945 4 H 0.067 0.933 5 C 0.142 3.858 6 N -0.601 5.601 7 C -0.220 4.220 8 H 0.080 0.920 9 C -0.012 4.012 10 N -0.923 5.923 11 Si 0.917 3.083 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.290 1.290 15 C 0.131 3.869 16 C 0.137 3.863 17 H 0.100 0.900 18 N -0.720 5.720 19 C 0.513 3.487 20 O -0.528 6.528 21 C -0.142 4.142 22 C 0.100 3.900 23 H 0.080 0.920 24 C -0.145 4.145 25 C -0.101 4.101 26 C -0.140 4.140 27 C -0.135 4.135 28 C 0.058 3.942 29 O -0.363 6.363 30 H 0.033 0.967 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.026 0.974 35 H 0.252 0.748 36 H 0.028 0.972 37 H 0.033 0.967 38 H 0.395 0.605 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.058 0.942 48 H 0.059 0.941 49 H 0.066 0.934 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.484 -4.204 24.355 24.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.298 6.298 3 C -0.005 4.005 4 H 0.084 0.916 5 C 0.016 3.984 6 N -0.329 5.329 7 C -0.348 4.348 8 H 0.098 0.902 9 C -0.207 4.207 10 N -0.572 5.572 11 Si 0.747 3.253 12 H -0.205 1.205 13 H -0.217 1.217 14 H -0.217 1.217 15 C 0.004 3.996 16 C 0.032 3.968 17 H 0.118 0.882 18 N -0.371 5.371 19 C 0.298 3.702 20 O -0.403 6.403 21 C -0.182 4.182 22 C 0.042 3.958 23 H 0.098 0.902 24 C -0.182 4.182 25 C -0.102 4.102 26 C -0.197 4.197 27 C -0.192 4.192 28 C -0.019 4.019 29 O -0.282 6.282 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.130 0.870 34 H 0.044 0.956 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.051 0.949 38 H 0.229 0.771 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.085 0.915 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.241 -4.803 23.671 24.185 hybrid contribution -0.355 1.155 -0.299 1.245 sum 0.886 -3.648 23.372 23.672 Atomic orbital electron populations 1.22702 0.81712 1.01913 0.99841 1.87864 1.19114 1.27763 1.95070 1.24032 0.92664 0.83687 1.00080 0.91554 1.22288 0.94603 0.92019 0.89502 1.44326 1.37340 1.35376 1.15848 1.19145 1.13791 1.05948 0.95961 0.90168 1.24812 0.98602 0.99408 0.97898 1.69772 1.24717 1.38664 1.24020 0.85957 0.77541 0.80746 0.81019 1.20470 1.21667 1.21746 1.21600 0.95876 0.94064 0.88043 1.22129 0.96579 0.99992 0.78136 0.88228 1.46022 1.20233 1.63619 1.07224 1.20430 0.83544 0.78114 0.88084 1.90732 1.28083 1.42208 1.79284 1.21871 1.00108 1.03296 0.92933 1.22645 0.97308 0.82234 0.93599 0.90243 1.23450 1.00399 0.99498 0.94896 1.22129 0.96364 0.95468 0.96204 1.21839 0.93988 1.01324 1.02553 1.21749 1.01348 1.01711 0.94424 1.23262 0.98903 0.95365 0.84403 1.88562 1.85732 1.19557 1.34375 0.94861 0.93574 0.90333 0.87029 0.95562 0.93675 0.95371 0.94908 0.77135 0.88366 0.87772 0.89749 0.90119 0.92224 0.92222 0.91951 0.92254 0.92284 0.92200 0.91534 0.91563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.85 101.05 1.10 1.61 16 2 O -0.38 -7.15 10.51 -35.23 -0.37 -7.52 16 3 C 0.05 1.08 3.15 -24.59 -0.08 1.00 16 4 H 0.07 1.20 7.69 -51.93 -0.40 0.80 16 5 C 0.14 3.51 5.62 -2.53 -0.01 3.49 16 6 N -0.60 -15.71 3.39 -170.07 -0.58 -16.28 16 7 C -0.22 -6.19 10.27 -15.06 -0.15 -6.34 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 10 N -0.92 -26.81 10.09 55.49 0.56 -26.25 16 11 Si 0.92 22.09 29.55 -169.99 -5.02 17.07 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 15 C 0.13 2.93 6.99 -3.06 -0.02 2.91 16 16 C 0.14 2.67 2.97 -66.09 -0.20 2.47 16 17 H 0.10 2.19 7.69 -51.93 -0.40 1.79 16 18 N -0.72 -11.08 5.13 -52.03 -0.27 -11.34 16 19 C 0.51 8.04 7.75 -10.99 -0.09 7.96 16 20 O -0.53 -10.66 15.32 -1.96 -0.03 -10.69 16 21 C -0.14 -1.51 5.43 -27.88 -0.15 -1.67 16 22 C 0.10 1.13 2.62 -25.71 -0.07 1.06 16 23 H 0.08 1.02 7.62 -51.93 -0.40 0.62 16 24 C -0.14 -1.12 5.53 -24.48 -0.14 -1.25 16 25 C -0.10 -0.77 0.95 -152.53 -0.14 -0.92 16 26 C -0.14 -1.01 8.43 37.16 0.31 -0.70 16 27 C -0.14 -0.79 8.54 37.16 0.32 -0.47 16 28 C 0.06 0.57 7.00 37.91 0.27 0.84 16 29 O -0.36 -5.00 10.59 -42.75 -0.45 -5.46 16 30 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.11 3.02 5.87 -51.93 -0.30 2.72 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.03 0.61 8.03 -51.92 -0.42 0.19 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.40 4.82 8.52 -40.82 -0.35 4.47 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.55 8.04 -51.93 -0.42 0.13 16 42 H 0.08 0.55 7.95 -51.93 -0.41 0.13 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.54 7.65 -51.93 -0.40 0.14 16 46 H 0.06 0.34 8.06 -51.93 -0.42 -0.08 16 47 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.07 0.59 7.75 -51.92 -0.40 0.19 16 50 H 0.07 0.65 7.84 -51.93 -0.41 0.24 16 LS Contribution 395.89 15.07 5.97 5.97 Total: -1.00 -34.21 395.89 -8.26 -42.47 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -8.91 Total: 2.49 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 0.85 Total: 9.55 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.28 Total: -53.88 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.85 Total: -23.66 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.21 -8.26 -42.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081935103.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.230 kcal (2) G-P(sol) polarization free energy of solvation -34.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds