Wall clock time and date at job start Fri Apr 10 2020 18:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 120.00271 * 2 1 4 4 C 1.50703 * 109.47067 * 269.99875 * 3 2 1 5 5 H 1.08005 * 119.99711 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00286 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99761 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00272 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47206 * 59.99702 * 8 6 4 10 10 H 1.48496 * 109.47401 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46727 * 299.99620 * 8 6 4 12 12 C 1.34777 * 119.99854 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00162 * 180.02562 * 12 2 1 14 14 C 1.50696 * 120.00141 * 0.02562 * 12 2 1 15 15 C 1.52993 * 109.47429 * 179.97438 * 14 12 2 16 16 N 1.46906 * 109.47378 * 179.97438 * 15 14 12 17 17 C 1.47192 * 110.99821 * 188.93843 * 16 15 14 18 18 C 1.52995 * 108.71317 * 167.62217 * 17 16 15 19 19 N 1.46010 * 110.04374 * 50.30522 * 18 17 16 20 20 C 1.46500 * 118.53785 * 161.81681 * 19 18 17 21 21 C 1.50706 * 109.46876 * 270.02020 * 20 19 18 22 22 N 1.34775 * 119.99532 * 180.02562 * 21 20 19 23 23 O 1.21275 * 120.00348 * 0.02562 * 21 20 19 24 24 C 1.33719 * 122.92333 * 341.83993 * 19 18 17 25 25 O 1.21283 * 118.62398 * 181.68632 * 24 19 18 26 26 C 1.46900 * 110.99728 * 66.04954 * 16 15 14 27 27 H 1.09002 * 109.47335 * 270.00739 * 1 2 3 28 28 H 1.08999 * 109.46626 * 30.00758 * 1 2 3 29 29 H 1.08996 * 109.47068 * 150.00171 * 1 2 3 30 30 H 1.09005 * 109.47188 * 29.99177 * 3 2 1 31 31 H 1.08999 * 109.47701 * 150.00044 * 3 2 1 32 32 H 0.97009 * 119.99873 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47043 * 59.99777 * 14 12 2 34 34 H 1.09004 * 109.47476 * 299.99851 * 14 12 2 35 35 H 1.09004 * 109.46862 * 60.00067 * 15 14 12 36 36 H 1.09000 * 109.47250 * 300.00090 * 15 14 12 37 37 H 1.08996 * 109.59389 * 287.40539 * 17 16 15 38 38 H 1.08996 * 109.59268 * 47.86248 * 17 16 15 39 39 H 1.08994 * 109.37536 * 290.13051 * 18 17 16 40 40 H 1.09001 * 109.28591 * 170.41977 * 18 17 16 41 41 H 1.08997 * 109.47115 * 30.02181 * 20 19 18 42 42 H 1.09001 * 109.47103 * 150.02384 * 20 19 18 43 43 H 0.97004 * 120.00401 * 359.97438 * 22 21 20 44 44 H 0.96999 * 120.00033 * 180.02562 * 22 21 20 45 45 H 1.08998 * 109.38672 * 293.81776 * 26 16 15 46 46 H 1.09001 * 109.38740 * 53.61309 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0982 1.0956 -2.2417 6 6 3.1271 2.8772 -1.6729 7 7 3.5544 3.6174 -0.6732 8 14 3.4391 3.4161 -3.4341 9 1 2.1418 3.5940 -4.1345 10 1 4.1826 4.7015 -3.4342 11 1 4.2415 2.3807 -4.1336 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3795 -3.6352 0.0005 16 7 1.6450 -4.9074 0.0011 17 6 2.5570 -6.0429 0.2147 18 6 1.7247 -7.2912 0.5146 19 7 0.6814 -7.4513 -0.4943 20 6 0.0423 -8.7617 -0.6382 21 6 0.8056 -9.5851 -1.6435 22 7 0.3974 -10.8349 -1.9398 23 8 1.7870 -9.1231 -2.1859 24 6 0.2837 -6.4553 -1.2929 25 8 -0.6117 -6.6666 -2.0832 26 6 0.8992 -5.0853 -1.2519 27 1 -0.3634 0.0001 1.0277 28 1 -0.3632 0.8899 -0.5140 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6084 2.0284 0.5137 31 1 3.1500 1.1384 0.5138 32 1 4.0320 4.4430 -0.8505 33 1 0.7590 -2.5302 -0.8897 34 1 0.7584 -2.5299 0.8903 35 1 3.0062 -3.5775 0.8906 36 1 3.0062 -3.5775 -0.8894 37 1 3.1525 -6.2073 -0.6833 38 1 3.2140 -5.8304 1.0580 39 1 1.2649 -7.1916 1.4977 40 1 2.3735 -8.1671 0.5059 41 1 0.0410 -9.2730 0.3244 42 1 -0.9840 -8.6297 -0.9809 43 1 -0.3874 -11.2046 -1.5057 44 1 0.8888 -11.3651 -2.5865 45 1 0.1127 -4.3333 -1.3147 46 1 1.5784 -4.9700 -2.0967 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364719327.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:40 Heat of formation + Delta-G solvation = -88.930669 kcal Electronic energy + Delta-G solvation = -27943.287799 eV Core-core repulsion = 23868.466493 eV Total energy + Delta-G solvation = -4074.821306 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.05379 -39.45276 -38.97349 -37.47962 -35.62917 -34.77712 -34.10585 -32.66175 -31.70008 -29.96220 -28.93077 -27.65104 -26.17224 -25.58091 -23.94219 -22.88274 -21.54642 -21.19096 -19.01813 -18.39489 -18.05386 -17.42720 -17.33107 -16.76366 -16.51689 -16.01648 -15.87165 -15.45403 -15.24599 -15.10572 -14.78630 -14.52533 -14.16670 -14.13891 -13.82998 -13.38194 -13.29168 -12.88212 -12.63098 -12.31563 -12.20751 -12.06739 -12.05153 -11.78249 -11.63438 -11.52300 -11.13502 -10.92486 -10.78592 -10.59521 -10.52842 -10.14630 -10.13577 -10.06338 -9.62808 -9.09736 -8.89952 -8.68622 -8.41801 -7.62534 -6.02829 -4.07591 2.20364 2.29438 2.52927 3.22143 3.33331 3.37517 3.38563 3.44214 3.46862 4.09379 4.21525 4.41415 4.46622 4.51293 4.61265 4.78150 4.93138 4.96063 5.12096 5.12614 5.23475 5.26474 5.32292 5.37959 5.43918 5.58850 5.61990 5.82300 5.85113 5.92332 6.02817 6.04335 6.24880 6.32610 6.60440 6.70522 6.84874 7.04858 7.07411 7.45695 7.55640 7.80167 7.88049 7.93459 8.25005 8.43715 8.91312 9.10686 9.57428 11.05128 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.023257 B = 0.002243 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.659287 B =12480.558387 C =12761.359589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.505 3.495 13 O -0.546 6.546 14 C -0.137 4.137 15 C 0.070 3.930 16 N -0.533 5.533 17 C 0.034 3.966 18 C 0.124 3.876 19 N -0.587 5.587 20 C 0.089 3.911 21 C 0.500 3.500 22 N -0.856 5.856 23 O -0.532 6.532 24 C 0.534 3.466 25 O -0.550 6.550 26 C 0.036 3.964 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.032 0.968 31 H 0.044 0.956 32 H 0.264 0.736 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.110 0.890 42 H 0.118 0.882 43 H 0.402 0.598 44 H 0.402 0.598 45 H 0.118 0.882 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.848 -28.418 5.217 30.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.335 5.335 3 C 0.126 3.874 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.291 3.709 13 O -0.424 6.424 14 C -0.178 4.178 15 C -0.057 4.057 16 N -0.258 5.258 17 C -0.094 4.094 18 C 0.001 3.999 19 N -0.320 5.320 20 C -0.038 4.038 21 C 0.283 3.717 22 N -0.421 5.421 23 O -0.407 6.407 24 C 0.323 3.677 25 O -0.427 6.427 26 C -0.094 4.094 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.119 0.881 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.128 0.872 42 H 0.136 0.864 43 H 0.230 0.770 44 H 0.233 0.767 45 H 0.136 0.864 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.296 -27.786 5.002 29.724 hybrid contribution 0.505 -0.093 -1.734 1.809 sum -8.791 -27.880 3.268 29.415 Atomic orbital electron populations 1.21642 0.81381 1.02594 1.00450 1.48160 1.06225 1.07882 1.71210 1.19281 0.92558 0.78149 0.97448 1.21395 1.36532 1.06264 0.92300 0.92573 1.24941 0.95384 0.96406 0.97436 1.69928 1.38337 1.14384 1.30759 0.86557 0.78365 0.77808 0.84680 1.20242 1.21173 1.20206 1.20248 0.88042 0.85132 0.77494 1.90668 1.13956 1.87360 1.50419 1.21655 0.99269 0.92703 1.04163 1.21914 0.94630 0.85991 1.03171 1.62588 1.27394 1.02882 1.32981 1.22488 0.94397 0.89773 1.02738 1.21571 0.89058 0.98210 0.91075 1.47011 1.39019 1.08926 1.37005 1.21303 0.98805 0.84419 0.99262 1.21278 0.85038 0.82089 0.83282 1.43839 1.33925 1.16518 1.47796 1.90772 1.26875 1.70758 1.52321 1.20160 0.82243 0.86227 0.79100 1.90714 1.30759 1.83147 1.38063 1.22351 0.99931 0.94228 0.92903 0.93683 0.90841 0.92387 0.95029 0.93837 0.92679 0.89596 0.88625 0.89181 0.93183 0.93068 0.88117 0.90407 0.90368 0.87218 0.86382 0.77020 0.76739 0.86443 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 10.24 59.85 0.61 1.93 16 2 N -0.60 -12.74 2.86 -182.95 -0.52 -13.27 16 3 C 0.24 6.45 5.16 -5.19 -0.03 6.42 16 4 C -0.53 -15.06 9.39 -34.44 -0.32 -15.39 16 5 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 8 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.50 10.23 7.67 -10.99 -0.08 10.15 16 13 O -0.55 -13.43 15.56 5.56 0.09 -13.35 16 14 C -0.14 -1.93 4.17 -27.89 -0.12 -2.05 16 15 C 0.07 0.92 4.24 -3.82 -0.02 0.90 16 16 N -0.53 -5.76 4.73 -236.10 -1.12 -6.88 16 17 C 0.03 0.31 5.60 -3.67 -0.02 0.29 16 18 C 0.12 0.92 6.57 -4.31 -0.03 0.89 16 19 N -0.59 -5.66 2.32 -175.95 -0.41 -6.07 16 20 C 0.09 0.62 5.77 -5.19 -0.03 0.59 16 21 C 0.50 4.36 8.16 -10.98 -0.09 4.27 16 22 N -0.86 -3.75 8.87 31.22 0.28 -3.47 16 23 O -0.53 -7.34 17.26 5.56 0.10 -7.25 16 24 C 0.53 6.75 7.55 -11.67 -0.09 6.66 16 25 O -0.55 -8.55 16.31 5.55 0.09 -8.46 16 26 C 0.04 0.43 5.17 -5.19 -0.03 0.40 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.20 8.07 -51.93 -0.42 0.79 16 29 H 0.06 0.74 6.44 -51.93 -0.33 0.41 16 30 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 31 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.09 1.10 5.95 -51.93 -0.31 0.79 16 34 H 0.10 1.17 8.11 -51.93 -0.42 0.75 16 35 H 0.09 1.20 7.89 -51.93 -0.41 0.79 16 36 H 0.05 0.74 8.01 -51.93 -0.42 0.32 16 37 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16 38 H 0.10 0.75 7.91 -51.93 -0.41 0.34 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.49 8.13 -51.93 -0.42 0.07 16 41 H 0.11 0.32 8.03 -51.93 -0.42 -0.10 16 42 H 0.12 0.83 7.21 -51.93 -0.37 0.46 16 43 H 0.40 0.35 8.83 -40.82 -0.36 -0.01 16 44 H 0.40 1.61 8.93 -40.82 -0.36 1.25 16 45 H 0.12 1.32 6.77 -51.93 -0.35 0.96 16 46 H 0.08 0.95 8.05 -51.93 -0.42 0.53 16 LS Contribution 381.52 15.07 5.75 5.75 Total: -1.00 -39.69 381.52 -7.41 -47.10 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -7.04 Total: -1.86 kcal Atomic # 6 Polarization: 17.04 SS G_CDS: -0.33 Total: 16.70 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -1.03 Total: -55.75 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: 0.27 Total: -29.06 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -39.69 -7.41 -47.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364719327.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.830 kcal (2) G-P(sol) polarization free energy of solvation -39.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds