Wall clock time and date at job start Fri Apr 10 2020 18:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 120.00271 * 2 1 4 4 C 1.50703 * 109.47067 * 269.99875 * 3 2 1 5 5 H 1.08005 * 119.99711 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00286 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99761 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00272 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47206 * 59.99702 * 8 6 4 10 10 H 1.48496 * 109.47401 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46727 * 299.99620 * 8 6 4 12 12 C 1.34777 * 119.99854 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00162 * 180.02562 * 12 2 1 14 14 C 1.50696 * 120.00141 * 0.02562 * 12 2 1 15 15 C 1.52993 * 109.47429 * 179.97438 * 14 12 2 16 16 N 1.46906 * 109.47378 * 179.97438 * 15 14 12 17 17 C 1.47192 * 110.99821 * 188.93843 * 16 15 14 18 18 C 1.52995 * 108.71317 * 167.62217 * 17 16 15 19 19 N 1.46010 * 110.04374 * 50.30522 * 18 17 16 20 20 C 1.46500 * 118.53785 * 161.81681 * 19 18 17 21 21 C 1.50706 * 109.46876 * 270.02020 * 20 19 18 22 22 N 1.34775 * 119.99532 * 180.02562 * 21 20 19 23 23 O 1.21275 * 120.00348 * 0.02562 * 21 20 19 24 24 C 1.33719 * 122.92333 * 341.83993 * 19 18 17 25 25 O 1.21283 * 118.62398 * 181.68632 * 24 19 18 26 26 C 1.46900 * 110.99728 * 66.04954 * 16 15 14 27 27 H 1.09002 * 109.47335 * 270.00739 * 1 2 3 28 28 H 1.08999 * 109.46626 * 30.00758 * 1 2 3 29 29 H 1.08996 * 109.47068 * 150.00171 * 1 2 3 30 30 H 1.09005 * 109.47188 * 29.99177 * 3 2 1 31 31 H 1.08999 * 109.47701 * 150.00044 * 3 2 1 32 32 H 0.97009 * 119.99873 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47043 * 59.99777 * 14 12 2 34 34 H 1.09004 * 109.47476 * 299.99851 * 14 12 2 35 35 H 1.09004 * 109.46862 * 60.00067 * 15 14 12 36 36 H 1.09000 * 109.47250 * 300.00090 * 15 14 12 37 37 H 1.08996 * 109.59389 * 287.40539 * 17 16 15 38 38 H 1.08996 * 109.59268 * 47.86248 * 17 16 15 39 39 H 1.08994 * 109.37536 * 290.13051 * 18 17 16 40 40 H 1.09001 * 109.28591 * 170.41977 * 18 17 16 41 41 H 1.08997 * 109.47115 * 30.02181 * 20 19 18 42 42 H 1.09001 * 109.47103 * 150.02384 * 20 19 18 43 43 H 0.97004 * 120.00401 * 359.97438 * 22 21 20 44 44 H 0.96999 * 120.00033 * 180.02562 * 22 21 20 45 45 H 1.08998 * 109.38672 * 293.81776 * 26 16 15 46 46 H 1.09001 * 109.38740 * 53.61309 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0982 1.0956 -2.2417 6 6 3.1271 2.8772 -1.6729 7 7 3.5544 3.6174 -0.6732 8 14 3.4391 3.4161 -3.4341 9 1 2.1418 3.5940 -4.1345 10 1 4.1826 4.7015 -3.4342 11 1 4.2415 2.3807 -4.1336 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3795 -3.6352 0.0005 16 7 1.6450 -4.9074 0.0011 17 6 2.5570 -6.0429 0.2147 18 6 1.7247 -7.2912 0.5146 19 7 0.6814 -7.4513 -0.4943 20 6 0.0423 -8.7617 -0.6382 21 6 0.8056 -9.5851 -1.6435 22 7 0.3974 -10.8349 -1.9398 23 8 1.7870 -9.1231 -2.1859 24 6 0.2837 -6.4553 -1.2929 25 8 -0.6117 -6.6666 -2.0832 26 6 0.8992 -5.0853 -1.2519 27 1 -0.3634 0.0001 1.0277 28 1 -0.3632 0.8899 -0.5140 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6084 2.0284 0.5137 31 1 3.1500 1.1384 0.5138 32 1 4.0320 4.4430 -0.8505 33 1 0.7590 -2.5302 -0.8897 34 1 0.7584 -2.5299 0.8903 35 1 3.0062 -3.5775 0.8906 36 1 3.0062 -3.5775 -0.8894 37 1 3.1525 -6.2073 -0.6833 38 1 3.2140 -5.8304 1.0580 39 1 1.2649 -7.1916 1.4977 40 1 2.3735 -8.1671 0.5059 41 1 0.0410 -9.2730 0.3244 42 1 -0.9840 -8.6297 -0.9809 43 1 -0.3874 -11.2046 -1.5057 44 1 0.8888 -11.3651 -2.5865 45 1 0.1127 -4.3333 -1.3147 46 1 1.5784 -4.9700 -2.0967 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364719327.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:39 Heat of formation + Delta-G solvation = -122.946374 kcal Electronic energy + Delta-G solvation = -27944.762831 eV Core-core repulsion = 23868.466493 eV Total energy + Delta-G solvation = -4076.296338 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.86270 -40.69193 -40.05522 -38.47330 -36.65211 -36.35506 -34.74485 -34.69073 -32.80363 -30.84843 -30.10903 -29.13991 -27.34209 -26.84945 -25.27429 -24.17856 -22.77177 -21.86195 -19.93516 -19.77323 -18.70559 -18.66674 -18.27826 -18.12003 -17.79231 -17.09138 -17.02409 -16.71455 -16.52454 -16.19971 -16.00300 -15.63072 -15.41599 -15.09993 -14.75982 -14.48356 -14.34448 -14.12963 -13.84723 -13.65314 -13.52948 -13.43193 -13.22953 -13.10458 -12.86992 -12.77356 -12.61350 -12.39697 -12.34899 -12.19181 -11.89503 -11.70492 -11.34395 -11.02116 -10.67574 -10.64524 -10.58574 -9.83218 -9.61721 -9.39453 -8.22593 -6.37337 1.35603 1.39665 1.39898 1.46942 1.59973 1.82309 1.87418 2.25440 2.39678 2.70447 2.77956 3.06526 3.44835 3.73254 3.81457 3.87632 4.05118 4.07552 4.18338 4.22645 4.31090 4.39356 4.43456 4.50517 4.51539 4.67749 4.72974 4.75639 4.88155 4.92900 4.99241 5.01238 5.05640 5.22048 5.24586 5.56488 5.67687 5.78237 5.85327 5.87412 6.06548 6.25018 6.43897 6.69787 6.81614 6.98056 7.28331 7.32876 7.50490 8.83986 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.023257 B = 0.002243 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.659287 B =12480.558387 C =12761.359589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.612 5.612 3 C 0.258 3.742 4 C -0.543 4.543 5 H 0.051 0.949 6 C 0.006 3.994 7 N -0.927 5.927 8 Si 0.966 3.034 9 H -0.261 1.261 10 H -0.277 1.277 11 H -0.279 1.279 12 C 0.495 3.505 13 O -0.600 6.600 14 C -0.119 4.119 15 C 0.078 3.922 16 N -0.518 5.518 17 C 0.029 3.971 18 C 0.124 3.876 19 N -0.585 5.585 20 C 0.087 3.913 21 C 0.494 3.506 22 N -0.834 5.834 23 O -0.593 6.593 24 C 0.527 3.473 25 O -0.588 6.588 26 C 0.035 3.965 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.023 0.977 31 H -0.001 1.001 32 H 0.267 0.733 33 H 0.105 0.895 34 H 0.127 0.873 35 H 0.088 0.912 36 H 0.025 0.975 37 H 0.032 0.968 38 H 0.119 0.881 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.158 0.842 42 H 0.118 0.882 43 H 0.421 0.579 44 H 0.406 0.594 45 H 0.124 0.876 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.790 -30.532 5.753 33.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.343 5.343 3 C 0.137 3.863 4 C -0.581 4.581 5 H 0.070 0.930 6 C -0.193 4.193 7 N -0.567 5.567 8 Si 0.791 3.209 9 H -0.185 1.185 10 H -0.202 1.202 11 H -0.205 1.205 12 C 0.284 3.716 13 O -0.482 6.482 14 C -0.159 4.159 15 C -0.050 4.050 16 N -0.243 5.243 17 C -0.099 4.099 18 C 0.003 3.997 19 N -0.316 5.316 20 C -0.040 4.040 21 C 0.279 3.721 22 N -0.399 5.399 23 O -0.473 6.473 24 C 0.316 3.684 25 O -0.469 6.469 26 C -0.096 4.096 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.041 0.959 31 H 0.017 0.983 32 H 0.076 0.924 33 H 0.123 0.877 34 H 0.145 0.855 35 H 0.106 0.894 36 H 0.044 0.956 37 H 0.050 0.950 38 H 0.137 0.863 39 H 0.124 0.876 40 H 0.112 0.888 41 H 0.176 0.824 42 H 0.136 0.864 43 H 0.253 0.747 44 H 0.237 0.763 45 H 0.142 0.858 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.315 -29.985 5.583 32.531 hybrid contribution 1.105 0.458 -1.840 2.195 sum -10.210 -29.527 3.743 31.466 Atomic orbital electron populations 1.21938 0.77817 1.03908 1.02715 1.48203 1.08465 1.06455 1.71191 1.18744 0.91167 0.80551 0.95868 1.21678 1.36824 1.06524 0.93123 0.93032 1.25859 0.94988 0.96484 1.01925 1.70044 1.38850 1.14815 1.32987 0.85491 0.78821 0.77365 0.79270 1.18510 1.20218 1.20493 1.21335 0.87780 0.86669 0.75809 1.90636 1.16653 1.88260 1.52646 1.21580 0.98956 0.88917 1.06425 1.21747 0.94264 0.86972 1.01997 1.62615 1.27147 1.02399 1.32164 1.22643 0.94645 0.89957 1.02671 1.21756 0.88778 0.97722 0.91479 1.47125 1.38856 1.09322 1.36273 1.21607 0.97957 0.83207 1.01179 1.21649 0.84377 0.83030 0.83084 1.43683 1.34044 1.15184 1.46967 1.90754 1.29621 1.72251 1.54648 1.20240 0.82000 0.86988 0.79184 1.90686 1.32572 1.83842 1.39755 1.22345 0.99886 0.94575 0.92775 0.90862 0.91838 0.88795 0.95852 0.98315 0.92388 0.87690 0.85496 0.89371 0.95627 0.94979 0.86278 0.87592 0.88815 0.82406 0.86365 0.74729 0.76328 0.85800 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.30 10.24 127.77 1.31 3.61 16 2 N -0.61 -25.92 2.86 -851.13 -2.43 -28.35 16 3 C 0.26 14.11 5.16 85.63 0.44 14.55 16 4 C -0.54 -31.80 9.39 25.60 0.24 -31.56 16 5 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 6 C 0.01 0.38 5.46 84.65 0.46 0.84 16 7 N -0.93 -56.75 13.29 21.45 0.28 -56.47 16 8 Si 0.97 45.74 29.54 68.60 2.03 47.76 16 9 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 12 C 0.50 20.15 7.67 87.66 0.67 20.82 16 13 O -0.60 -30.69 15.56 -3.03 -0.05 -30.74 16 14 C -0.12 -3.12 4.17 29.84 0.12 -3.00 16 15 C 0.08 1.99 4.24 86.30 0.37 2.35 16 16 N -0.52 -10.36 4.73 -900.88 -4.26 -14.63 16 17 C 0.03 0.48 5.60 86.25 0.48 0.96 16 18 C 0.12 1.48 6.57 86.47 0.57 2.05 16 19 N -0.59 -10.06 2.32 -829.56 -1.92 -11.98 16 20 C 0.09 0.96 5.77 85.63 0.49 1.46 16 21 C 0.49 7.85 8.16 87.66 0.72 8.57 16 22 N -0.83 -5.53 8.87 -173.53 -1.54 -7.07 16 23 O -0.59 -16.26 17.26 -3.01 -0.05 -16.31 16 24 C 0.53 12.82 7.55 87.68 0.66 13.48 16 25 O -0.59 -18.09 16.31 -3.04 -0.05 -18.14 16 26 C 0.03 0.79 5.17 85.42 0.44 1.23 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 29 H 0.09 2.09 6.44 -2.39 -0.02 2.07 16 30 H 0.02 1.29 8.07 -2.38 -0.02 1.27 16 31 H 0.00 -0.08 7.42 -2.39 -0.02 -0.10 16 32 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 33 H 0.11 2.42 5.95 -2.38 -0.01 2.40 16 34 H 0.13 2.62 8.11 -2.39 -0.02 2.60 16 35 H 0.09 2.29 7.89 -2.38 -0.02 2.27 16 36 H 0.03 0.77 8.01 -2.39 -0.02 0.75 16 37 H 0.03 0.66 8.08 -2.39 -0.02 0.64 16 38 H 0.12 1.53 7.91 -2.39 -0.02 1.51 16 39 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.09 0.90 8.13 -2.39 -0.02 0.88 16 41 H 0.16 0.18 8.03 -2.39 -0.02 0.16 16 42 H 0.12 1.39 7.21 -2.39 -0.02 1.37 16 43 H 0.42 -0.50 8.83 -92.71 -0.82 -1.32 16 44 H 0.41 2.58 8.93 -92.71 -0.83 1.75 16 45 H 0.12 2.58 6.77 -2.39 -0.02 2.56 16 46 H 0.06 1.60 8.05 -2.39 -0.02 1.58 16 Total: -1.00 -91.85 381.52 -1.64 -93.50 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -0.63 Total: 7.08 kcal Atomic # 6 Polarization: 28.37 SS G_CDS: 6.98 Total: 35.35 kcal Atomic # 7 Polarization: -108.62 SS G_CDS: -9.87 Total: -118.50 kcal Atomic # 8 Polarization: -65.04 SS G_CDS: -0.15 Total: -65.19 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -91.85 -1.64 -93.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364719327.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.450 kcal (2) G-P(sol) polarization free energy of solvation -91.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds