Wall clock time and date at job start Fri Apr 10 2020 18:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 120.00207 * 2 1 4 4 C 1.50702 * 109.47126 * 269.99703 * 3 2 1 5 5 H 1.07998 * 120.00085 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00168 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00234 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99934 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47335 * 89.99407 * 8 6 4 10 10 H 1.48495 * 109.47386 * 209.99867 * 8 6 4 11 11 H 1.48506 * 109.46983 * 329.99522 * 8 6 4 12 12 C 1.34777 * 119.99592 * 180.02562 * 2 1 3 13 13 O 1.21291 * 119.99946 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00322 * 359.97438 * 12 2 1 15 15 C 1.53000 * 109.46943 * 180.02562 * 14 12 2 16 16 N 1.46902 * 109.46612 * 180.02562 * 15 14 12 17 17 C 1.47452 * 111.00041 * 169.99962 * 16 15 14 18 18 C 1.54317 * 107.23176 * 236.74067 * 17 16 15 19 19 H 1.09000 * 110.70113 * 96.09789 * 18 17 16 20 20 C 1.50698 * 110.70355 * 219.32971 * 18 17 16 21 21 N 1.34779 * 120.00285 * 298.55330 * 20 18 17 22 22 O 1.21283 * 119.99799 * 118.54732 * 20 18 17 23 23 C 1.55138 * 103.02049 * 337.71439 * 18 17 16 24 24 H 1.08996 * 110.99077 * 277.56046 * 23 18 17 25 25 C 1.50699 * 110.98750 * 153.74500 * 23 18 17 26 26 N 1.34778 * 119.99924 * 179.97438 * 25 23 18 27 27 O 1.21276 * 120.00284 * 0.02562 * 25 23 18 28 28 C 1.47839 * 111.00307 * 49.15651 * 16 15 14 29 29 H 1.08996 * 109.47337 * 270.00149 * 1 2 3 30 30 H 1.09003 * 109.46964 * 29.99768 * 1 2 3 31 31 H 1.08999 * 109.47674 * 149.99689 * 1 2 3 32 32 H 1.08994 * 109.47082 * 30.00052 * 3 2 1 33 33 H 1.08996 * 109.47049 * 150.00374 * 3 2 1 34 34 H 0.97001 * 120.00080 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.46958 * 60.00310 * 14 12 2 36 36 H 1.08997 * 109.47096 * 300.00147 * 14 12 2 37 37 H 1.08995 * 109.47497 * 60.00288 * 15 14 12 38 38 H 1.09002 * 109.47151 * 299.99370 * 15 14 12 39 39 H 1.09003 * 109.88491 * 117.33177 * 17 16 15 40 40 H 1.08999 * 109.88050 * 356.14827 * 17 16 15 41 41 H 0.97001 * 119.99538 * 359.97438 * 21 20 18 42 42 H 0.96996 * 119.99948 * 180.02562 * 21 20 18 43 43 H 0.97001 * 119.99642 * 0.02562 * 26 25 23 44 44 H 0.96995 * 120.00211 * 179.97438 * 26 25 23 45 45 H 1.08998 * 110.37488 * 27.53173 * 28 16 15 46 46 H 1.09001 * 110.37406 * 265.19131 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.3449 3.2577 -2.9127 8 14 3.7330 3.9292 -0.2530 9 1 5.1065 3.5080 0.1231 10 1 3.7480 5.3559 -0.6644 11 1 2.8270 3.7593 0.9113 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3852 -2.4723 -0.0005 15 6 2.3795 -3.6352 -0.0005 16 7 1.6449 -4.9074 -0.0011 17 6 2.5547 -6.0429 -0.2402 18 6 2.0274 -6.7984 -1.4782 19 1 2.5487 -6.4736 -2.3787 20 6 2.1618 -8.2876 -1.2906 21 7 3.3801 -8.8382 -1.1200 22 8 1.1735 -8.9907 -1.2932 23 6 0.5331 -6.3846 -1.5299 24 1 -0.0643 -6.9931 -0.8511 25 6 -0.0011 -6.4662 -2.9367 26 7 -1.2855 -6.1455 -3.1894 27 8 0.7244 -6.8213 -3.8413 28 6 0.5986 -4.9146 -1.0456 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5139 32 1 1.6085 2.0284 0.5138 33 1 3.1499 1.1383 0.5138 34 1 3.8218 4.0836 -3.0900 35 1 0.7583 -2.5299 -0.8903 36 1 0.7589 -2.5302 0.8897 37 1 3.0061 -3.5776 0.8894 38 1 3.0061 -3.5775 -0.8906 39 1 2.5566 -6.7051 0.6256 40 1 3.5632 -5.6759 -0.4313 41 1 4.1705 -8.2759 -1.1183 42 1 3.4665 -9.7968 -0.9997 43 1 -1.8659 -5.8618 -2.4658 44 1 -1.6293 -6.1976 -4.0949 45 1 0.8787 -4.2562 -1.8679 46 1 -0.3598 -4.6107 -0.6247 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413021690.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:53 Heat of formation + Delta-G solvation = -104.672929 kcal Electronic energy + Delta-G solvation = -28280.318320 eV Core-core repulsion = 24204.814378 eV Total energy + Delta-G solvation = -4075.503942 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.04576 -39.28492 -39.13986 -38.03870 -35.00911 -34.08454 -33.94507 -33.31240 -32.52871 -30.20196 -29.47085 -28.19399 -25.98257 -24.55791 -23.91111 -22.29150 -21.18396 -20.72617 -20.00492 -18.43322 -18.04498 -17.95946 -17.00216 -16.97747 -16.86496 -16.37123 -15.78569 -15.66848 -15.27365 -15.20570 -14.67251 -14.58435 -14.15663 -13.87433 -13.75519 -13.62219 -13.31018 -12.93291 -12.62495 -12.36894 -12.22179 -12.05123 -11.95022 -11.79707 -11.59629 -11.40676 -11.26722 -11.13606 -10.88876 -10.54263 -10.26768 -10.17792 -10.17158 -9.99659 -9.94390 -9.57901 -9.07157 -8.61997 -8.61314 -7.74825 -6.11660 -4.10792 2.34249 2.38670 3.10365 3.18913 3.26974 3.29586 3.33010 3.34660 3.58561 3.84859 3.97182 4.23554 4.36916 4.55030 4.74901 4.84304 4.94758 4.96216 5.04105 5.06593 5.15309 5.22496 5.25419 5.43327 5.46455 5.52879 5.66961 5.71967 5.79786 5.93474 6.00589 6.11977 6.45286 6.50639 6.57216 6.66733 6.73844 6.91205 6.98244 7.04452 7.28788 7.57807 7.94795 7.99978 8.19846 8.43516 8.88408 8.93961 9.48472 11.01725 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.018787 B = 0.002588 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.028382 B =10815.095128 C =11217.834559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.598 5.598 3 C 0.215 3.785 4 C -0.530 4.530 5 H 0.073 0.927 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.507 3.493 13 O -0.543 6.543 14 C -0.141 4.141 15 C 0.064 3.936 16 N -0.522 5.522 17 C 0.052 3.948 18 C -0.119 4.119 19 H 0.119 0.881 20 C 0.538 3.462 21 N -0.854 5.854 22 O -0.541 6.541 23 C -0.103 4.103 24 H 0.124 0.876 25 C 0.534 3.466 26 N -0.852 5.852 27 O -0.541 6.541 28 C 0.048 3.952 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.030 0.970 33 H 0.037 0.963 34 H 0.265 0.735 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.050 0.950 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.403 0.597 42 H 0.402 0.598 43 H 0.403 0.597 44 H 0.403 0.597 45 H 0.060 0.940 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.157 -20.719 6.596 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.330 5.330 3 C 0.094 3.906 4 C -0.568 4.568 5 H 0.091 0.909 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.190 1.190 12 C 0.294 3.706 13 O -0.421 6.421 14 C -0.181 4.181 15 C -0.064 4.064 16 N -0.245 5.245 17 C -0.076 4.076 18 C -0.142 4.142 19 H 0.137 0.863 20 C 0.322 3.678 21 N -0.417 5.417 22 O -0.418 6.418 23 C -0.126 4.126 24 H 0.141 0.859 25 C 0.318 3.682 26 N -0.415 5.415 27 O -0.417 6.417 28 C -0.080 4.080 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.231 0.769 42 H 0.233 0.767 43 H 0.231 0.769 44 H 0.233 0.767 45 H 0.079 0.921 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.789 -21.116 6.505 23.428 hybrid contribution 0.619 0.817 -0.309 1.071 sum -7.169 -20.299 6.196 22.402 Atomic orbital electron populations 1.21662 0.80920 1.02948 1.00503 1.47839 1.06308 1.07168 1.71678 1.19666 0.92480 0.80084 0.98345 1.21319 1.37072 1.07157 0.91252 0.90857 1.24867 0.95228 0.97361 0.95603 1.69897 1.41437 1.23584 1.18687 0.86835 0.80130 0.79739 0.82885 1.19890 1.21062 1.19048 1.20268 0.88047 0.85099 0.77230 1.90674 1.13960 1.87319 1.50157 1.21743 0.99393 0.92791 1.04197 1.22128 0.94966 0.86307 1.02989 1.63746 1.12386 1.03053 1.45364 1.22855 0.96317 0.92772 0.95662 1.22477 0.97167 0.92692 1.01868 0.86272 1.20158 0.83169 0.89948 0.74532 1.43816 1.08718 1.12478 1.76677 1.90730 1.37424 1.63499 1.50115 1.22336 0.96286 0.98854 0.95093 0.85854 1.20189 0.82049 0.75513 0.90420 1.43789 1.12319 1.71385 1.14033 1.90741 1.57562 1.46524 1.46902 1.23122 0.97637 0.93339 0.93915 0.93549 0.90613 0.92179 0.95230 0.94539 0.92531 0.89349 0.88554 0.89257 0.93193 0.89576 0.90912 0.76858 0.76750 0.76886 0.76668 0.92145 0.88676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 10.24 59.84 0.61 1.80 16 2 N -0.60 -11.80 2.86 -182.96 -0.52 -12.32 16 3 C 0.21 5.16 4.23 -5.19 -0.02 5.14 16 4 C -0.53 -15.05 9.94 -34.44 -0.34 -15.39 16 5 H 0.07 2.29 8.06 -52.49 -0.42 1.86 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 8 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 9 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 12 C 0.51 9.69 7.67 -10.99 -0.08 9.61 16 13 O -0.54 -12.73 15.56 5.55 0.09 -12.64 16 14 C -0.14 -1.81 3.92 -27.88 -0.11 -1.92 16 15 C 0.06 0.78 4.11 -3.82 -0.02 0.77 16 16 N -0.52 -5.08 5.31 -231.25 -1.23 -6.31 16 17 C 0.05 0.44 6.41 -2.83 -0.02 0.43 16 18 C -0.12 -1.14 2.46 -89.95 -0.22 -1.36 16 19 H 0.12 1.25 7.39 -51.93 -0.38 0.86 16 20 C 0.54 5.54 7.29 -10.99 -0.08 5.46 16 21 N -0.85 -5.49 8.82 31.22 0.28 -5.21 16 22 O -0.54 -7.58 16.60 5.55 0.09 -7.49 16 23 C -0.10 -0.97 2.48 -89.63 -0.22 -1.19 16 24 H 0.12 1.13 7.49 -51.93 -0.39 0.74 16 25 C 0.53 5.85 7.41 -10.99 -0.08 5.77 16 26 N -0.85 -5.97 8.87 31.22 0.28 -5.69 16 27 O -0.54 -8.19 16.55 5.56 0.09 -8.10 16 28 C 0.05 0.42 4.76 -2.30 -0.01 0.41 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 31 H 0.06 0.68 6.44 -51.93 -0.33 0.34 16 32 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 33 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.09 1.02 5.74 -51.93 -0.30 0.72 16 36 H 0.10 1.04 8.11 -51.93 -0.42 0.62 16 37 H 0.09 1.15 8.10 -51.93 -0.42 0.73 16 38 H 0.05 0.70 7.91 -51.93 -0.41 0.28 16 39 H 0.09 0.68 7.81 -51.93 -0.41 0.27 16 40 H 0.07 0.57 7.49 -51.93 -0.39 0.18 16 41 H 0.40 1.58 8.82 -40.82 -0.36 1.22 16 42 H 0.40 2.15 8.93 -40.82 -0.36 1.78 16 43 H 0.40 1.59 8.83 -40.82 -0.36 1.23 16 44 H 0.40 2.52 8.93 -40.82 -0.36 2.16 16 45 H 0.06 0.60 6.91 -51.93 -0.36 0.24 16 46 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 376.74 15.07 5.68 5.68 Total: -1.00 -39.95 376.74 -6.68 -46.63 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -6.84 Total: 4.05 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: -0.69 Total: 11.49 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.43 Total: -56.30 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: 0.27 Total: -28.23 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -39.95 -6.68 -46.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413021690.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.040 kcal (2) G-P(sol) polarization free energy of solvation -39.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds