Wall clock time and date at job start Fri Apr 10 2020 18:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 120.00207 * 2 1 4 4 C 1.50702 * 109.47126 * 269.99703 * 3 2 1 5 5 H 1.07998 * 120.00085 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00168 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00234 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99934 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47335 * 89.99407 * 8 6 4 10 10 H 1.48495 * 109.47386 * 209.99867 * 8 6 4 11 11 H 1.48506 * 109.46983 * 329.99522 * 8 6 4 12 12 C 1.34777 * 119.99592 * 180.02562 * 2 1 3 13 13 O 1.21291 * 119.99946 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00322 * 359.97438 * 12 2 1 15 15 C 1.53000 * 109.46943 * 180.02562 * 14 12 2 16 16 N 1.46902 * 109.46612 * 180.02562 * 15 14 12 17 17 C 1.47452 * 111.00041 * 169.99962 * 16 15 14 18 18 C 1.54317 * 107.23176 * 236.74067 * 17 16 15 19 19 H 1.09000 * 110.70113 * 96.09789 * 18 17 16 20 20 C 1.50698 * 110.70355 * 219.32971 * 18 17 16 21 21 N 1.34779 * 120.00285 * 298.55330 * 20 18 17 22 22 O 1.21283 * 119.99799 * 118.54732 * 20 18 17 23 23 C 1.55138 * 103.02049 * 337.71439 * 18 17 16 24 24 H 1.08996 * 110.99077 * 277.56046 * 23 18 17 25 25 C 1.50699 * 110.98750 * 153.74500 * 23 18 17 26 26 N 1.34778 * 119.99924 * 179.97438 * 25 23 18 27 27 O 1.21276 * 120.00284 * 0.02562 * 25 23 18 28 28 C 1.47839 * 111.00307 * 49.15651 * 16 15 14 29 29 H 1.08996 * 109.47337 * 270.00149 * 1 2 3 30 30 H 1.09003 * 109.46964 * 29.99768 * 1 2 3 31 31 H 1.08999 * 109.47674 * 149.99689 * 1 2 3 32 32 H 1.08994 * 109.47082 * 30.00052 * 3 2 1 33 33 H 1.08996 * 109.47049 * 150.00374 * 3 2 1 34 34 H 0.97001 * 120.00080 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.46958 * 60.00310 * 14 12 2 36 36 H 1.08997 * 109.47096 * 300.00147 * 14 12 2 37 37 H 1.08995 * 109.47497 * 60.00288 * 15 14 12 38 38 H 1.09002 * 109.47151 * 299.99370 * 15 14 12 39 39 H 1.09003 * 109.88491 * 117.33177 * 17 16 15 40 40 H 1.08999 * 109.88050 * 356.14827 * 17 16 15 41 41 H 0.97001 * 119.99538 * 359.97438 * 21 20 18 42 42 H 0.96996 * 119.99948 * 180.02562 * 21 20 18 43 43 H 0.97001 * 119.99642 * 0.02562 * 26 25 23 44 44 H 0.96995 * 120.00211 * 179.97438 * 26 25 23 45 45 H 1.08998 * 110.37488 * 27.53173 * 28 16 15 46 46 H 1.09001 * 110.37406 * 265.19131 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.3449 3.2577 -2.9127 8 14 3.7330 3.9292 -0.2530 9 1 5.1065 3.5080 0.1231 10 1 3.7480 5.3559 -0.6644 11 1 2.8270 3.7593 0.9113 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3852 -2.4723 -0.0005 15 6 2.3795 -3.6352 -0.0005 16 7 1.6449 -4.9074 -0.0011 17 6 2.5547 -6.0429 -0.2402 18 6 2.0274 -6.7984 -1.4782 19 1 2.5487 -6.4736 -2.3787 20 6 2.1618 -8.2876 -1.2906 21 7 3.3801 -8.8382 -1.1200 22 8 1.1735 -8.9907 -1.2932 23 6 0.5331 -6.3846 -1.5299 24 1 -0.0643 -6.9931 -0.8511 25 6 -0.0011 -6.4662 -2.9367 26 7 -1.2855 -6.1455 -3.1894 27 8 0.7244 -6.8213 -3.8413 28 6 0.5986 -4.9146 -1.0456 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5139 32 1 1.6085 2.0284 0.5138 33 1 3.1499 1.1383 0.5138 34 1 3.8218 4.0836 -3.0900 35 1 0.7583 -2.5299 -0.8903 36 1 0.7589 -2.5302 0.8897 37 1 3.0061 -3.5776 0.8894 38 1 3.0061 -3.5775 -0.8906 39 1 2.5566 -6.7051 0.6256 40 1 3.5632 -5.6759 -0.4313 41 1 4.1705 -8.2759 -1.1183 42 1 3.4665 -9.7968 -0.9997 43 1 -1.8659 -5.8618 -2.4658 44 1 -1.6293 -6.1976 -4.0949 45 1 0.8787 -4.2562 -1.8679 46 1 -0.3598 -4.6107 -0.6247 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413021690.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:52 Heat of formation + Delta-G solvation = -142.740590 kcal Electronic energy + Delta-G solvation = -28281.969058 eV Core-core repulsion = 24204.814378 eV Total energy + Delta-G solvation = -4077.154680 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.84886 -40.69501 -39.98144 -38.96286 -36.62477 -34.87365 -34.81362 -34.66401 -34.10263 -31.38078 -30.38414 -29.67355 -27.31168 -25.71705 -24.82111 -23.79786 -22.10910 -21.57192 -20.78317 -19.82809 -19.14469 -18.77326 -18.73256 -17.90658 -17.66566 -17.42664 -17.11416 -16.83914 -16.40487 -16.15780 -16.00875 -15.54072 -15.49386 -14.86897 -14.77334 -14.60213 -14.49519 -14.27871 -13.96149 -13.69174 -13.60844 -13.36560 -13.23948 -12.78171 -12.71857 -12.61983 -12.42734 -12.26746 -12.11623 -12.04464 -11.93595 -11.74241 -11.15283 -11.03901 -10.83243 -10.69306 -10.67735 -10.63113 -9.43551 -9.34867 -8.34131 -6.39322 1.33449 1.37403 1.45931 1.54536 1.56732 1.83949 2.27513 2.31392 2.43648 2.55462 3.00351 3.02934 3.11315 3.47078 3.82979 3.87398 3.99924 4.09437 4.10605 4.17294 4.27596 4.34833 4.42112 4.51662 4.65621 4.71082 4.78284 4.80572 4.85946 4.95198 4.97175 5.00855 5.03707 5.08202 5.46623 5.64090 5.78701 5.84321 5.86135 5.89969 6.23879 6.36890 6.42643 6.62317 6.74088 7.22042 7.27602 7.30436 7.45462 8.82885 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.018787 B = 0.002588 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.028382 B =10815.095128 C =11217.834559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.609 5.609 3 C 0.222 3.778 4 C -0.536 4.536 5 H 0.027 0.973 6 C 0.009 3.991 7 N -0.947 5.947 8 Si 0.949 3.051 9 H -0.277 1.277 10 H -0.276 1.276 11 H -0.236 1.236 12 C 0.495 3.505 13 O -0.598 6.598 14 C -0.124 4.124 15 C 0.071 3.929 16 N -0.513 5.513 17 C 0.055 3.945 18 C -0.119 4.119 19 H 0.106 0.894 20 C 0.534 3.466 21 N -0.835 5.835 22 O -0.582 6.582 23 C -0.098 4.098 24 H 0.131 0.869 25 C 0.527 3.473 26 N -0.833 5.833 27 O -0.592 6.592 28 C 0.048 3.952 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.018 0.982 34 H 0.268 0.732 35 H 0.108 0.892 36 H 0.132 0.868 37 H 0.081 0.919 38 H 0.024 0.976 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.416 0.584 42 H 0.409 0.591 43 H 0.420 0.580 44 H 0.408 0.592 45 H 0.048 0.952 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.889 -21.059 9.208 25.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.340 5.340 3 C 0.099 3.901 4 C -0.574 4.574 5 H 0.046 0.954 6 C -0.189 4.189 7 N -0.588 5.588 8 Si 0.772 3.228 9 H -0.202 1.202 10 H -0.201 1.201 11 H -0.159 1.159 12 C 0.284 3.716 13 O -0.480 6.480 14 C -0.164 4.164 15 C -0.057 4.057 16 N -0.236 5.236 17 C -0.073 4.073 18 C -0.142 4.142 19 H 0.124 0.876 20 C 0.319 3.681 21 N -0.399 5.399 22 O -0.462 6.462 23 C -0.120 4.120 24 H 0.148 0.852 25 C 0.312 3.688 26 N -0.396 5.396 27 O -0.473 6.473 28 C -0.079 4.079 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.068 0.932 33 H 0.036 0.964 34 H 0.077 0.923 35 H 0.126 0.874 36 H 0.150 0.850 37 H 0.100 0.900 38 H 0.043 0.957 39 H 0.117 0.883 40 H 0.096 0.904 41 H 0.247 0.753 42 H 0.241 0.759 43 H 0.252 0.748 44 H 0.239 0.761 45 H 0.066 0.934 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.586 -21.465 9.151 25.226 hybrid contribution 1.134 0.841 -1.221 1.866 sum -8.452 -20.623 7.930 23.657 Atomic orbital electron populations 1.21996 0.77426 1.04033 1.03118 1.47981 1.08580 1.05935 1.71481 1.19326 0.92825 0.82824 0.95116 1.21581 1.36683 1.06641 0.92512 0.95442 1.25884 0.95358 0.99037 0.98630 1.70056 1.42810 1.24522 1.21371 0.85695 0.79585 0.77657 0.79888 1.20226 1.20149 1.15884 1.21387 0.87829 0.86766 0.75593 1.90642 1.16648 1.88241 1.52466 1.21704 0.99069 0.88911 1.06680 1.21966 0.94767 0.87490 1.01510 1.63826 1.12255 1.01985 1.45573 1.22897 0.96393 0.92434 0.95600 1.22437 0.97580 0.92460 1.01695 0.87616 1.20298 0.83542 0.90080 0.74178 1.43686 1.08201 1.13171 1.74814 1.90706 1.38888 1.64276 1.52360 1.22309 0.96106 0.99384 0.94232 0.85166 1.20526 0.82763 0.75009 0.90546 1.43662 1.11296 1.69588 1.15055 1.90718 1.59075 1.49123 1.48333 1.23253 0.98638 0.92573 0.93459 0.89987 0.91946 0.88846 0.93180 0.96353 0.92304 0.87371 0.85000 0.90012 0.95727 0.88297 0.90398 0.75272 0.75873 0.74839 0.76103 0.93394 0.85414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.92 10.24 127.77 1.31 3.22 16 2 N -0.61 -23.16 2.86 -851.14 -2.43 -25.59 16 3 C 0.22 10.52 4.23 85.63 0.36 10.89 16 4 C -0.54 -31.19 9.94 25.60 0.25 -30.93 16 5 H 0.03 1.79 8.06 -2.91 -0.02 1.76 16 6 C 0.01 0.51 5.47 84.65 0.46 0.97 16 7 N -0.95 -59.84 13.96 21.45 0.30 -59.54 16 8 Si 0.95 43.99 27.47 68.60 1.88 45.87 16 9 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.24 -9.70 6.54 99.48 0.65 -9.05 16 12 C 0.50 18.46 7.67 87.66 0.67 19.13 16 13 O -0.60 -28.56 15.56 -3.06 -0.05 -28.60 16 14 C -0.12 -2.84 3.92 29.85 0.12 -2.72 16 15 C 0.07 1.64 4.11 86.30 0.35 1.99 16 16 N -0.51 -8.73 5.31 -885.53 -4.71 -13.43 16 17 C 0.05 0.85 6.41 86.64 0.55 1.40 16 18 C -0.12 -2.19 2.46 -10.36 -0.03 -2.21 16 19 H 0.11 2.26 7.39 -2.39 -0.02 2.24 16 20 C 0.53 10.67 7.29 87.66 0.64 11.31 16 21 N -0.84 -9.88 8.82 -173.53 -1.53 -11.41 16 22 O -0.58 -16.10 16.60 -3.04 -0.05 -16.15 16 23 C -0.10 -1.69 2.48 -10.15 -0.03 -1.71 16 24 H 0.13 2.12 7.49 -2.39 -0.02 2.10 16 25 C 0.53 11.15 7.41 87.66 0.65 11.80 16 26 N -0.83 -10.29 8.87 -173.54 -1.54 -11.83 16 27 O -0.59 -18.26 16.55 -3.02 -0.05 -18.31 16 28 C 0.05 0.71 4.76 86.78 0.41 1.13 16 29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 1.75 8.07 -2.39 -0.02 1.73 16 31 H 0.09 1.71 6.44 -2.39 -0.02 1.69 16 32 H 0.05 2.17 7.13 -2.39 -0.02 2.15 16 33 H 0.02 0.94 6.85 -2.39 -0.02 0.92 16 34 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 35 H 0.11 2.09 5.74 -2.39 -0.01 2.08 16 36 H 0.13 2.17 8.11 -2.39 -0.02 2.15 16 37 H 0.08 2.02 8.10 -2.39 -0.02 2.00 16 38 H 0.02 0.69 7.91 -2.39 -0.02 0.67 16 39 H 0.10 1.32 7.81 -2.39 -0.02 1.31 16 40 H 0.08 1.14 7.49 -2.39 -0.02 1.12 16 41 H 0.42 2.76 8.82 -92.71 -0.82 1.94 16 42 H 0.41 3.91 8.93 -92.71 -0.83 3.09 16 43 H 0.42 2.18 8.83 -92.71 -0.82 1.36 16 44 H 0.41 4.57 8.93 -92.71 -0.83 3.75 16 45 H 0.05 0.86 6.91 -2.39 -0.02 0.84 16 46 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -92.44 376.74 -4.72 -97.16 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -2.29 Total: 17.56 kcal Atomic # 6 Polarization: 18.52 SS G_CDS: 5.74 Total: 24.26 kcal Atomic # 7 Polarization: -111.89 SS G_CDS: -9.91 Total: -121.80 kcal Atomic # 8 Polarization: -62.91 SS G_CDS: -0.15 Total: -63.06 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.87 kcal Total: -92.44 -4.72 -97.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413021690.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.576 kcal (2) G-P(sol) polarization free energy of solvation -92.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds