Wall clock time and date at job start Fri Apr 10 2020 18:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35352 * 116.99831 * 2 1 4 4 C 1.39001 * 126.40697 * 88.91946 * 3 2 1 5 5 C 1.46926 * 126.49316 * 359.97438 * 4 3 2 6 6 O 1.21668 * 120.00132 * 37.46042 * 5 4 3 7 7 N 1.34772 * 119.99662 * 217.46555 * 5 4 3 8 8 C 1.46502 * 120.00080 * 355.07441 * 7 5 4 9 9 C 1.46498 * 119.99837 * 175.08805 * 7 5 4 10 10 C 1.52999 * 109.47675 * 89.99335 * 9 7 5 11 11 H 1.09004 * 109.46744 * 59.99793 * 10 9 7 12 12 O 1.42893 * 109.47208 * 300.00072 * 10 9 7 13 13 C 1.52998 * 109.47193 * 179.97438 * 10 9 7 14 14 N 1.46501 * 109.46852 * 185.00009 * 13 10 9 15 15 C 1.46497 * 120.00119 * 90.00673 * 14 13 10 16 16 C 1.36932 * 120.00028 * 269.99832 * 14 13 10 17 17 H 1.07999 * 120.00198 * 27.61343 * 16 14 13 18 18 C 1.38813 * 120.00329 * 207.61183 * 16 14 13 19 19 N 1.31617 * 119.99715 * 8.72402 * 18 16 14 20 20 Si 1.86800 * 120.00376 * 188.72916 * 18 16 14 21 21 H 1.48501 * 109.47177 * 89.99556 * 20 18 16 22 22 H 1.48494 * 109.47385 * 209.99965 * 20 18 16 23 23 H 1.48507 * 109.46816 * 330.00034 * 20 18 16 24 24 C 1.41460 * 107.00777 * 180.25792 * 4 3 2 25 25 N 1.30318 * 108.13756 * 359.55843 * 24 4 3 26 26 N 1.34655 * 126.40667 * 268.91462 * 3 2 1 27 27 C 1.46503 * 125.74389 * 359.96938 * 26 3 2 28 28 H 1.09001 * 109.46987 * 304.96563 * 1 2 3 29 29 H 1.09001 * 109.47090 * 64.95796 * 1 2 3 30 30 H 1.08996 * 109.47231 * 184.95717 * 1 2 3 31 31 H 1.08993 * 109.47842 * 274.25787 * 8 7 5 32 32 H 1.08996 * 109.47110 * 34.26503 * 8 7 5 33 33 H 1.09002 * 109.47038 * 154.25660 * 8 7 5 34 34 H 1.09003 * 109.46930 * 329.98935 * 9 7 5 35 35 H 1.09007 * 109.46991 * 209.99679 * 9 7 5 36 36 H 0.96701 * 114.00318 * 300.00271 * 12 10 9 37 37 H 1.09003 * 109.47187 * 304.99846 * 13 10 9 38 38 H 1.08997 * 109.47226 * 65.00067 * 13 10 9 39 39 H 1.08999 * 109.47679 * 85.76883 * 15 14 13 40 40 H 1.08999 * 109.47257 * 205.77868 * 15 14 13 41 41 H 1.09008 * 109.47081 * 325.76897 * 15 14 13 42 42 H 0.96999 * 120.00080 * 179.97438 * 19 18 16 43 43 H 1.07995 * 125.93309 * 179.73234 * 24 4 3 44 44 H 1.08998 * 109.47170 * 94.82423 * 27 26 3 45 45 H 1.09002 * 109.47058 * 214.82862 * 27 26 3 46 46 H 1.09002 * 109.46598 * 334.82343 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.3992 1.9507 1.1185 5 6 2.1790 1.5780 2.5226 6 8 2.2997 0.4183 2.8703 7 7 1.8433 2.5208 3.4252 8 6 1.8032 3.9312 3.0310 9 6 1.5187 2.1352 4.8008 10 6 2.7933 2.1432 5.6471 11 1 3.2260 3.1437 5.6426 12 8 3.7331 1.2153 5.1016 13 6 2.4541 1.7411 7.0838 14 7 3.6503 1.8639 7.9205 15 6 3.9406 3.1274 8.6028 16 6 4.4971 0.7975 8.0651 17 1 4.5726 0.0578 7.2818 18 6 5.2585 0.6671 9.2184 19 7 5.0446 1.4664 10.2420 20 14 6.5869 -0.6425 9.3177 21 1 7.8725 -0.0815 8.8301 22 1 6.7423 -1.0842 10.7268 23 1 6.2018 -1.8029 8.4747 24 6 3.0074 3.1383 0.6486 25 7 3.0218 3.0988 -0.6539 26 7 2.4246 1.9088 -1.0835 27 6 2.2448 1.4964 -2.4778 28 1 -0.3633 0.5890 0.8422 29 1 -0.3633 0.4350 -0.9311 30 1 -0.3633 -1.0238 0.0888 31 1 2.7997 4.3629 3.1234 32 1 1.4676 4.0100 1.9970 33 1 1.1122 4.4701 3.6792 34 1 1.0859 1.1348 4.8052 35 1 0.8017 2.8430 5.2170 36 1 3.4144 0.3027 5.0743 37 1 1.6723 2.3956 7.4693 38 1 2.1042 0.7090 7.0993 39 1 3.4130 3.1551 9.5562 40 1 5.0133 3.2073 8.7786 41 1 3.6114 3.9600 7.9810 42 1 5.5764 1.3751 11.0480 43 1 3.3952 3.9375 1.2627 44 1 1.3256 1.9316 -2.8698 45 1 3.0919 1.8413 -3.0708 46 1 2.1834 0.4094 -2.5300 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486358289.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:10 Heat of formation + Delta-G solvation = 4.519319 kcal Electronic energy + Delta-G solvation = -28867.083398 eV Core-core repulsion = 24796.314387 eV Total energy + Delta-G solvation = -4070.769011 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.82956 -39.38558 -38.44949 -37.00050 -35.20515 -34.41739 -33.60503 -31.28462 -30.37391 -29.50623 -27.77481 -27.22493 -26.82640 -25.83302 -25.22109 -22.70216 -21.78487 -21.21171 -20.33656 -19.64677 -17.99263 -17.10054 -16.77123 -16.68867 -16.25758 -15.75076 -15.65511 -15.03224 -14.92026 -14.66318 -14.57406 -14.26342 -14.14722 -13.56539 -13.43635 -13.14698 -13.06348 -12.99901 -12.80634 -12.69263 -12.34352 -12.15529 -11.76309 -11.61084 -11.44269 -10.95209 -10.77044 -10.58106 -10.53219 -10.43505 -10.26795 -9.85223 -9.80687 -9.72342 -9.67166 -9.47038 -8.82434 -8.46653 -8.21890 -6.50297 -5.60865 -3.07627 1.04658 1.81859 2.01672 3.10463 3.13258 3.35776 3.49572 3.54903 3.58023 4.11577 4.62119 4.63583 4.68982 4.70477 4.80195 4.84091 4.97956 5.05281 5.06860 5.14713 5.18066 5.24769 5.35777 5.45148 5.57252 5.58457 5.65341 5.78086 5.81705 5.99060 6.09781 6.11030 6.20777 6.59307 6.69633 6.83134 6.92911 7.02465 7.22584 7.45695 7.53837 7.77365 8.00105 8.42969 8.55162 8.64327 9.38592 9.99544 10.50549 11.46281 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020016 B = 0.002843 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.517883 B = 9847.871625 C =10233.276908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.297 6.297 3 C 0.309 3.691 4 C -0.285 4.285 5 C 0.598 3.402 6 O -0.525 6.525 7 N -0.605 5.605 8 C 0.076 3.924 9 C 0.085 3.915 10 C 0.072 3.928 11 H 0.084 0.916 12 O -0.541 6.541 13 C 0.124 3.876 14 N -0.593 5.593 15 C 0.163 3.837 16 C -0.237 4.237 17 H 0.069 0.931 18 C -0.003 4.003 19 N -0.915 5.915 20 Si 0.905 3.095 21 H -0.289 1.289 22 H -0.293 1.293 23 H -0.279 1.279 24 C 0.090 3.910 25 N -0.280 5.280 26 N -0.371 5.371 27 C 0.095 3.905 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.107 0.893 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.369 0.631 37 H 0.040 0.960 38 H 0.050 0.950 39 H 0.018 0.982 40 H 0.054 0.946 41 H -0.010 1.010 42 H 0.250 0.750 43 H 0.198 0.802 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.236 4.737 -24.643 28.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.206 6.206 3 C 0.136 3.864 4 C -0.300 4.300 5 C 0.385 3.615 6 O -0.400 6.400 7 N -0.338 5.338 8 C -0.068 4.068 9 C -0.038 4.038 10 C 0.009 3.991 11 H 0.102 0.898 12 O -0.345 6.345 13 C -0.005 4.005 14 N -0.314 5.314 15 C 0.019 3.981 16 C -0.367 4.367 17 H 0.087 0.913 18 C -0.200 4.200 19 N -0.561 5.561 20 Si 0.736 3.264 21 H -0.216 1.216 22 H -0.220 1.220 23 H -0.204 1.204 24 C -0.097 4.097 25 N -0.103 5.103 26 N -0.161 5.161 27 C -0.046 4.046 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.126 0.874 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.216 0.784 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.036 0.964 40 H 0.073 0.927 41 H 0.008 0.992 42 H 0.060 0.940 43 H 0.214 0.786 44 H 0.096 0.904 45 H 0.113 0.887 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.368 4.961 -25.492 28.765 hybrid contribution 0.073 -1.232 0.835 1.490 sum -12.295 3.729 -24.657 27.804 Atomic orbital electron populations 1.23169 0.76973 1.04638 1.01002 1.86054 1.21097 1.20541 1.92945 1.19214 0.95925 0.84905 0.86364 1.20054 1.18004 0.98368 0.93597 1.16889 0.76450 0.84897 0.83248 1.90778 1.50345 1.18900 1.80024 1.47493 1.69130 1.06747 1.10450 1.21985 1.01960 0.81768 1.01072 1.22399 0.98896 1.01891 0.80636 1.23118 0.88196 0.94191 0.93633 0.89770 1.86547 1.42940 1.20295 1.84696 1.21347 0.89900 0.99305 0.89908 1.43701 1.23039 1.10399 1.54297 1.20755 1.00500 0.83869 0.93008 1.19237 1.16536 1.02117 0.98843 0.91297 1.25123 1.00963 0.98730 0.95198 1.70041 1.41524 1.40391 1.04094 0.86231 0.82099 0.81607 0.76487 1.21630 1.21968 1.20431 1.24128 0.96931 0.96983 0.91610 1.77228 1.19915 0.99788 1.13398 1.48889 1.45988 1.14721 1.06455 1.21967 1.03772 1.01593 0.77302 0.92524 0.93331 0.87422 0.92419 0.91175 0.90970 0.89979 0.90205 0.78438 0.94131 0.93117 0.96385 0.92725 0.99183 0.93967 0.78558 0.90416 0.88697 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 11.13 101.05 1.12 1.41 16 2 O -0.30 -3.54 10.31 -17.75 -0.18 -3.73 16 3 C 0.31 3.84 6.99 -16.03 -0.11 3.73 16 4 C -0.28 -3.83 5.39 -104.87 -0.57 -4.40 16 5 C 0.60 9.30 7.14 -12.75 -0.09 9.21 16 6 O -0.52 -10.00 15.12 -8.44 -0.13 -10.13 16 7 N -0.61 -8.03 2.83 -183.04 -0.52 -8.55 16 8 C 0.08 0.70 9.07 59.85 0.54 1.24 16 9 C 0.09 1.19 5.18 -4.04 -0.02 1.17 16 10 C 0.07 1.31 3.48 -26.73 -0.09 1.21 16 11 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 12 O -0.54 -11.50 11.20 -48.88 -0.55 -12.05 16 13 C 0.12 2.55 5.37 -4.04 -0.02 2.53 16 14 N -0.59 -15.37 2.89 -181.12 -0.52 -15.90 16 15 C 0.16 4.15 8.99 59.85 0.54 4.69 16 16 C -0.24 -6.81 9.20 -15.06 -0.14 -6.95 16 17 H 0.07 1.98 7.45 -52.49 -0.39 1.59 16 18 C 0.00 -0.09 5.12 -17.43 -0.09 -0.18 16 19 N -0.91 -27.66 10.82 55.49 0.60 -27.06 16 20 Si 0.91 23.13 29.56 -169.99 -5.03 18.11 16 21 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 22 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 23 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 24 C 0.09 1.02 9.69 -16.97 -0.16 0.85 16 25 N -0.28 -3.25 12.48 30.88 0.39 -2.86 16 26 N -0.37 -3.92 3.99 -67.67 -0.27 -4.19 16 27 C 0.09 0.56 11.41 59.85 0.68 1.24 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.51 7.38 -51.93 -0.38 0.13 16 32 H 0.07 0.56 5.76 -51.93 -0.30 0.26 16 33 H 0.07 0.54 7.84 -51.93 -0.41 0.14 16 34 H 0.08 1.21 7.49 -51.93 -0.39 0.83 16 35 H 0.08 0.90 7.86 -51.92 -0.41 0.49 16 36 H 0.37 7.60 8.31 45.56 0.38 7.98 16 37 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 38 H 0.05 1.05 8.04 -51.93 -0.42 0.64 16 39 H 0.02 0.48 7.78 -51.93 -0.40 0.08 16 40 H 0.05 1.52 6.91 -51.93 -0.36 1.16 16 41 H -0.01 -0.23 8.10 -51.92 -0.42 -0.65 16 42 H 0.25 7.34 8.31 -40.82 -0.34 7.01 16 43 H 0.20 1.73 6.30 -52.49 -0.33 1.40 16 44 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.09 0.45 8.02 -51.93 -0.42 0.03 16 LS Contribution 381.16 15.07 5.74 5.74 Total: -1.00 -37.74 381.16 -5.21 -42.96 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.34 Total: 1.90 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 1.59 Total: 15.76 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: -0.33 Total: -58.56 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.86 Total: -25.91 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.03 Total: 18.11 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.74 -5.21 -42.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486358289.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.475 kcal (2) G-P(sol) polarization free energy of solvation -37.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds