Wall clock time and date at job start Fri Apr 10 2020 18:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35352 * 116.99831 * 2 1 4 4 C 1.39001 * 126.40697 * 88.91946 * 3 2 1 5 5 C 1.46926 * 126.49316 * 359.97438 * 4 3 2 6 6 O 1.21668 * 120.00132 * 37.46042 * 5 4 3 7 7 N 1.34772 * 119.99662 * 217.46555 * 5 4 3 8 8 C 1.46502 * 120.00080 * 355.07441 * 7 5 4 9 9 C 1.46498 * 119.99837 * 175.08805 * 7 5 4 10 10 C 1.52999 * 109.47675 * 89.99335 * 9 7 5 11 11 H 1.09004 * 109.46744 * 59.99793 * 10 9 7 12 12 O 1.42893 * 109.47208 * 300.00072 * 10 9 7 13 13 C 1.52998 * 109.47193 * 179.97438 * 10 9 7 14 14 N 1.46501 * 109.46852 * 185.00009 * 13 10 9 15 15 C 1.46497 * 120.00119 * 90.00673 * 14 13 10 16 16 C 1.36932 * 120.00028 * 269.99832 * 14 13 10 17 17 H 1.07999 * 120.00198 * 27.61343 * 16 14 13 18 18 C 1.38813 * 120.00329 * 207.61183 * 16 14 13 19 19 N 1.31617 * 119.99715 * 8.72402 * 18 16 14 20 20 Si 1.86800 * 120.00376 * 188.72916 * 18 16 14 21 21 H 1.48501 * 109.47177 * 89.99556 * 20 18 16 22 22 H 1.48494 * 109.47385 * 209.99965 * 20 18 16 23 23 H 1.48507 * 109.46816 * 330.00034 * 20 18 16 24 24 C 1.41460 * 107.00777 * 180.25792 * 4 3 2 25 25 N 1.30318 * 108.13756 * 359.55843 * 24 4 3 26 26 N 1.34655 * 126.40667 * 268.91462 * 3 2 1 27 27 C 1.46503 * 125.74389 * 359.96938 * 26 3 2 28 28 H 1.09001 * 109.46987 * 304.96563 * 1 2 3 29 29 H 1.09001 * 109.47090 * 64.95796 * 1 2 3 30 30 H 1.08996 * 109.47231 * 184.95717 * 1 2 3 31 31 H 1.08993 * 109.47842 * 274.25787 * 8 7 5 32 32 H 1.08996 * 109.47110 * 34.26503 * 8 7 5 33 33 H 1.09002 * 109.47038 * 154.25660 * 8 7 5 34 34 H 1.09003 * 109.46930 * 329.98935 * 9 7 5 35 35 H 1.09007 * 109.46991 * 209.99679 * 9 7 5 36 36 H 0.96701 * 114.00318 * 300.00271 * 12 10 9 37 37 H 1.09003 * 109.47187 * 304.99846 * 13 10 9 38 38 H 1.08997 * 109.47226 * 65.00067 * 13 10 9 39 39 H 1.08999 * 109.47679 * 85.76883 * 15 14 13 40 40 H 1.08999 * 109.47257 * 205.77868 * 15 14 13 41 41 H 1.09008 * 109.47081 * 325.76897 * 15 14 13 42 42 H 0.96999 * 120.00080 * 179.97438 * 19 18 16 43 43 H 1.07995 * 125.93309 * 179.73234 * 24 4 3 44 44 H 1.08998 * 109.47170 * 94.82423 * 27 26 3 45 45 H 1.09002 * 109.47058 * 214.82862 * 27 26 3 46 46 H 1.09002 * 109.46598 * 334.82343 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.3992 1.9507 1.1185 5 6 2.1790 1.5780 2.5226 6 8 2.2997 0.4183 2.8703 7 7 1.8433 2.5208 3.4252 8 6 1.8032 3.9312 3.0310 9 6 1.5187 2.1352 4.8008 10 6 2.7933 2.1432 5.6471 11 1 3.2260 3.1437 5.6426 12 8 3.7331 1.2153 5.1016 13 6 2.4541 1.7411 7.0838 14 7 3.6503 1.8639 7.9205 15 6 3.9406 3.1274 8.6028 16 6 4.4971 0.7975 8.0651 17 1 4.5726 0.0578 7.2818 18 6 5.2585 0.6671 9.2184 19 7 5.0446 1.4664 10.2420 20 14 6.5869 -0.6425 9.3177 21 1 7.8725 -0.0815 8.8301 22 1 6.7423 -1.0842 10.7268 23 1 6.2018 -1.8029 8.4747 24 6 3.0074 3.1383 0.6486 25 7 3.0218 3.0988 -0.6539 26 7 2.4246 1.9088 -1.0835 27 6 2.2448 1.4964 -2.4778 28 1 -0.3633 0.5890 0.8422 29 1 -0.3633 0.4350 -0.9311 30 1 -0.3633 -1.0238 0.0888 31 1 2.7997 4.3629 3.1234 32 1 1.4676 4.0100 1.9970 33 1 1.1122 4.4701 3.6792 34 1 1.0859 1.1348 4.8052 35 1 0.8017 2.8430 5.2170 36 1 3.4144 0.3027 5.0743 37 1 1.6723 2.3956 7.4693 38 1 2.1042 0.7090 7.0993 39 1 3.4130 3.1551 9.5562 40 1 5.0133 3.2073 8.7786 41 1 3.6114 3.9600 7.9810 42 1 5.5764 1.3751 11.0480 43 1 3.3952 3.9375 1.2627 44 1 1.3256 1.9316 -2.8698 45 1 3.0919 1.8413 -3.0708 46 1 2.1834 0.4094 -2.5300 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486358289.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:10 Heat of formation + Delta-G solvation = -24.901471 kcal Electronic energy + Delta-G solvation = -28868.359179 eV Core-core repulsion = 24796.314387 eV Total energy + Delta-G solvation = -4072.044792 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.67659 -40.52520 -39.25273 -38.57837 -36.67682 -35.99351 -34.37239 -33.28405 -31.49940 -30.70184 -28.68754 -28.09722 -27.84503 -27.59450 -26.63888 -24.10418 -22.89645 -22.21515 -21.98436 -20.62960 -18.91005 -18.70861 -18.00052 -17.57976 -17.56072 -16.84073 -16.82947 -16.61813 -16.18790 -15.78257 -15.65481 -15.42383 -15.22479 -14.96722 -14.84434 -14.59481 -14.31501 -13.80705 -13.69409 -13.62420 -13.53800 -13.16959 -12.98550 -12.85220 -12.80732 -12.54389 -12.43884 -12.42792 -12.20655 -12.08523 -11.82335 -11.77217 -11.35724 -11.10439 -10.84993 -10.53967 -10.48255 -9.75962 -9.45574 -8.56492 -7.80302 -5.28825 0.19820 1.07524 1.11927 1.44859 1.46624 1.55532 2.12526 2.15235 2.52016 2.54082 3.34326 3.37468 3.63483 3.82113 3.92318 3.99795 4.13917 4.18401 4.24730 4.31323 4.33050 4.34573 4.38341 4.49552 4.59316 4.61967 4.63337 4.64015 4.73629 4.80816 4.88893 4.96540 5.00315 5.06572 5.30373 5.33815 5.41421 5.64840 5.67350 5.74416 6.23441 6.39945 6.42392 6.50360 7.00952 7.22291 7.33978 7.92648 8.36478 9.24175 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020016 B = 0.002843 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.517883 B = 9847.871625 C =10233.276908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.318 6.318 3 C 0.307 3.693 4 C -0.315 4.315 5 C 0.592 3.408 6 O -0.573 6.573 7 N -0.603 5.603 8 C 0.069 3.931 9 C 0.096 3.904 10 C 0.082 3.918 11 H 0.080 0.920 12 O -0.563 6.563 13 C 0.122 3.878 14 N -0.612 5.612 15 C 0.176 3.824 16 C -0.241 4.241 17 H 0.063 0.937 18 C -0.057 4.057 19 N -0.942 5.942 20 Si 0.964 3.036 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.272 1.272 24 C 0.095 3.905 25 N -0.292 5.292 26 N -0.366 5.366 27 C 0.084 3.916 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.123 0.877 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.117 0.883 36 H 0.368 0.632 37 H 0.068 0.932 38 H 0.043 0.957 39 H -0.001 1.001 40 H 0.021 0.979 41 H 0.028 0.972 42 H 0.246 0.754 43 H 0.218 0.782 44 H 0.102 0.898 45 H 0.105 0.895 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.482 5.687 -26.713 30.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.228 6.228 3 C 0.132 3.868 4 C -0.331 4.331 5 C 0.382 3.618 6 O -0.453 6.453 7 N -0.334 5.334 8 C -0.073 4.073 9 C -0.028 4.028 10 C 0.020 3.980 11 H 0.098 0.902 12 O -0.368 6.368 13 C -0.005 4.005 14 N -0.335 5.335 15 C 0.031 3.969 16 C -0.372 4.372 17 H 0.080 0.920 18 C -0.252 4.252 19 N -0.590 5.590 20 Si 0.793 3.207 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.197 1.197 24 C -0.091 4.091 25 N -0.115 5.115 26 N -0.155 5.155 27 C -0.055 4.055 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.141 0.859 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.135 0.865 36 H 0.214 0.786 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.017 0.983 40 H 0.040 0.960 41 H 0.046 0.954 42 H 0.056 0.944 43 H 0.234 0.766 44 H 0.120 0.880 45 H 0.124 0.876 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.653 5.954 -27.623 31.382 hybrid contribution 0.376 -1.512 1.357 2.066 sum -13.276 4.442 -26.266 29.764 Atomic orbital electron populations 1.23399 0.74897 1.05820 1.02017 1.86006 1.23158 1.20546 1.93102 1.19346 0.95713 0.84840 0.86877 1.20043 1.20211 0.99939 0.92885 1.17273 0.75692 0.84558 0.84322 1.90742 1.52700 1.20886 1.80925 1.47562 1.68066 1.08167 1.09618 1.22253 1.03080 0.79440 1.02537 1.22194 0.97069 1.02745 0.80773 1.22971 0.89500 0.92980 0.92600 0.90167 1.86513 1.44638 1.20674 1.85011 1.21545 0.88681 0.99732 0.90534 1.43947 1.24474 1.09922 1.55140 1.20520 0.98209 0.85133 0.93020 1.19435 1.16865 1.02466 0.98397 0.91961 1.25812 1.03219 1.00937 0.95187 1.70181 1.42501 1.41898 1.04396 0.85308 0.79497 0.79549 0.76358 1.21774 1.21824 1.19734 1.24391 0.96271 0.96748 0.91652 1.77194 1.20334 1.00524 1.13467 1.49209 1.44782 1.13991 1.07543 1.22362 1.05478 1.02555 0.75153 0.93505 0.90619 0.85875 0.91885 0.89824 0.88550 0.90983 0.86455 0.78553 0.91391 0.93848 0.98315 0.95991 0.95367 0.94432 0.76619 0.87966 0.87642 0.87919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.13 113.37 1.26 1.72 16 2 O -0.32 -7.38 10.31 -86.42 -0.89 -8.27 16 3 C 0.31 7.36 6.99 84.44 0.59 7.95 16 4 C -0.31 -8.25 5.39 -20.03 -0.11 -8.36 16 5 C 0.59 18.23 7.14 86.52 0.62 18.84 16 6 O -0.57 -22.32 15.12 8.81 0.13 -22.19 16 7 N -0.60 -14.99 2.83 -851.23 -2.41 -17.40 16 8 C 0.07 1.08 9.07 127.77 1.16 2.24 16 9 C 0.10 2.50 5.18 86.38 0.45 2.95 16 10 C 0.08 2.87 3.48 30.59 0.11 2.97 16 11 H 0.08 2.88 8.14 -2.38 -0.02 2.86 16 12 O -0.56 -24.12 11.20 -135.93 -1.52 -25.64 16 13 C 0.12 4.87 5.37 86.38 0.46 5.34 16 14 N -0.61 -31.65 2.89 -726.94 -2.10 -33.75 16 15 C 0.18 8.91 8.99 127.77 1.15 10.06 16 16 C -0.24 -13.95 9.20 84.03 0.77 -13.17 16 17 H 0.06 3.63 7.45 -2.91 -0.02 3.61 16 18 C -0.06 -3.39 5.12 84.86 0.43 -2.96 16 19 N -0.94 -57.93 10.82 21.65 0.23 -57.70 16 20 Si 0.96 48.24 29.56 68.60 2.03 50.27 16 21 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 22 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 23 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 24 C 0.10 2.02 9.69 85.71 0.83 2.85 16 25 N -0.29 -6.27 12.48 -56.23 -0.70 -6.97 16 26 N -0.37 -7.11 3.99 -479.79 -1.91 -9.03 16 27 C 0.08 0.79 11.41 127.77 1.46 2.25 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 0.95 7.38 -2.39 -0.02 0.93 16 32 H 0.08 1.12 5.76 -2.39 -0.01 1.10 16 33 H 0.10 1.06 7.84 -2.39 -0.02 1.04 16 34 H 0.07 2.07 7.49 -2.39 -0.02 2.05 16 35 H 0.12 2.20 7.86 -2.38 -0.02 2.18 16 36 H 0.37 15.61 8.31 -74.06 -0.62 15.00 16 37 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 38 H 0.04 1.79 8.04 -2.39 -0.02 1.77 16 39 H 0.00 -0.08 7.78 -2.39 -0.02 -0.10 16 40 H 0.02 1.21 6.91 -2.39 -0.02 1.20 16 41 H 0.03 1.18 8.10 -2.38 -0.02 1.17 16 42 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 43 H 0.22 3.37 6.30 -2.91 -0.02 3.35 16 44 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.10 0.78 8.02 -2.39 -0.02 0.76 16 Total: -1.00 -83.37 381.16 2.42 -80.95 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.38 Total: 17.05 kcal Atomic # 6 Polarization: 23.50 SS G_CDS: 9.18 Total: 32.68 kcal Atomic # 7 Polarization: -117.96 SS G_CDS: -6.89 Total: -124.85 kcal Atomic # 8 Polarization: -53.82 SS G_CDS: -2.28 Total: -56.10 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -83.37 2.42 -80.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486358289.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.050 kcal (2) G-P(sol) polarization free energy of solvation -83.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds