Wall clock time and date at job start Fri Apr 10 2020 18:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47040 * 2 1 4 4 C 1.52998 * 109.46940 * 240.00195 * 2 1 3 5 5 C 1.50706 * 109.47241 * 65.00164 * 4 2 1 6 6 N 1.34779 * 120.00042 * 180.02562 * 5 4 2 7 7 O 1.21277 * 119.99639 * 359.97438 * 5 4 2 8 8 C 1.50698 * 109.47012 * 120.00398 * 2 1 3 9 9 O 1.21280 * 119.99745 * 120.00343 * 8 2 1 10 10 N 1.34774 * 119.99753 * 299.99672 * 8 2 1 11 11 C 1.47425 * 125.65138 * 0.02907 * 10 8 2 12 12 C 1.54908 * 104.92961 * 204.15299 * 11 10 8 13 13 C 1.55154 * 101.58289 * 322.93718 * 12 11 10 14 14 H 1.08997 * 110.72022 * 277.13434 * 13 12 11 15 15 N 1.46899 * 110.72080 * 154.04273 * 13 12 11 16 16 C 1.46895 * 111.00137 * 86.45199 * 15 13 12 17 17 C 1.50705 * 109.47230 * 179.97438 * 16 15 13 18 18 O 1.21288 * 119.99752 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99696 * 180.02562 * 17 16 15 20 20 C 1.37102 * 119.99486 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00291 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99845 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99708 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00007 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47461 * 90.00003 * 24 22 20 26 26 H 1.48497 * 109.47346 * 210.00076 * 24 22 20 27 27 H 1.48499 * 109.47451 * 330.00033 * 24 22 20 28 28 C 1.47290 * 125.79121 * 180.02562 * 10 8 2 29 29 H 1.08998 * 109.47139 * 299.99584 * 1 2 3 30 30 H 1.09002 * 109.47043 * 60.00198 * 1 2 3 31 31 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47153 * 184.99878 * 4 2 1 33 33 H 1.08992 * 109.47505 * 304.99892 * 4 2 1 34 34 H 0.96998 * 120.00057 * 359.97438 * 6 5 4 35 35 H 0.96998 * 119.99716 * 179.97438 * 6 5 4 36 36 H 1.09002 * 110.36696 * 85.25946 * 11 10 8 37 37 H 1.08995 * 110.36608 * 323.04783 * 11 10 8 38 38 H 1.09008 * 111.00494 * 81.01141 * 12 11 10 39 39 H 1.08999 * 111.00647 * 204.85975 * 12 11 10 40 40 H 1.00900 * 111.00125 * 322.49562 * 15 13 12 41 41 H 1.09003 * 109.47306 * 300.00141 * 16 15 13 42 42 H 1.09005 * 109.47380 * 59.99997 * 16 15 13 43 43 H 0.96993 * 120.00303 * 0.02562 * 19 17 16 44 44 H 0.97001 * 119.99555 * 179.97438 * 23 22 20 45 45 H 1.09004 * 109.85762 * 59.50172 * 28 10 8 46 46 H 1.08995 * 110.00297 * 298.43119 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 7 1.9844 -0.3918 -3.7003 7 8 1.0110 1.0870 -2.3633 8 6 2.0323 -0.7105 1.2304 9 8 2.7296 -1.6965 1.1190 10 7 1.7068 -0.2500 2.4545 11 6 0.8706 0.9316 2.7337 12 6 1.2937 1.3943 4.1502 13 6 1.5379 0.0371 4.8612 14 1 0.6001 -0.3809 5.2270 15 7 2.4995 0.1921 5.9610 16 6 1.8217 0.5970 7.1997 17 6 2.8377 0.7451 8.3029 18 8 4.0110 0.5346 8.0790 19 7 2.4424 1.1115 9.5382 20 6 3.3666 1.2457 10.5419 21 1 4.4114 1.0583 10.3426 22 6 2.9593 1.6240 11.8154 23 7 1.6881 1.8525 12.0578 24 14 4.2185 1.8075 13.1828 25 1 4.7289 3.2020 13.2019 26 1 3.5817 1.4956 14.4875 27 1 5.3464 0.8710 12.9461 28 6 2.1255 -0.8415 3.7368 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1264 -0.7994 -1.2057 33 1 1.6054 -1.7197 -1.2952 34 1 2.4883 -1.2157 -3.7909 35 1 1.7275 0.1091 -4.4902 36 1 -0.1851 0.6604 2.7228 37 1 1.0674 1.7166 2.0036 38 1 2.2090 1.9852 4.1110 39 1 0.4918 1.9508 4.6352 40 1 3.2266 0.8473 5.7159 41 1 1.3146 1.5489 7.0421 42 1 1.0909 -0.1621 7.4789 43 1 1.5041 1.2795 9.7173 44 1 1.4037 2.1162 12.9469 45 1 3.2135 -0.8497 3.8030 46 1 1.7415 -1.8580 3.8216 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490836441.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:24 Heat of formation + Delta-G solvation = -110.746432 kcal Electronic energy + Delta-G solvation = -27211.621181 eV Core-core repulsion = 23135.853873 eV Total energy + Delta-G solvation = -4075.767309 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.75178 -39.73906 -38.49774 -37.69651 -34.92145 -34.38976 -34.11711 -33.77624 -31.27012 -30.61708 -29.25849 -28.03086 -26.27105 -24.80246 -23.73877 -22.78695 -21.15632 -20.63486 -19.33108 -19.27684 -18.03042 -17.93205 -17.48127 -16.70694 -16.39944 -16.02040 -15.96605 -15.54245 -15.19594 -14.60921 -14.54062 -14.16369 -14.08070 -13.77658 -13.72413 -13.48707 -13.38340 -12.83449 -12.69672 -12.54937 -12.46352 -12.25969 -12.03755 -11.71647 -11.52654 -11.49165 -11.44006 -11.30521 -11.05295 -10.95832 -10.40038 -10.34785 -10.23054 -10.15408 -9.87936 -9.52442 -8.83205 -8.50878 -8.11290 -7.97734 -6.43218 -3.84015 2.20881 2.43824 2.62707 3.17194 3.17671 3.26175 3.32319 3.88303 4.00166 4.10383 4.22844 4.29421 4.41883 4.57094 4.60739 4.72659 4.85900 4.99402 5.08119 5.10371 5.18278 5.22378 5.24358 5.29974 5.32068 5.54901 5.58401 5.65523 5.72439 5.74447 5.85623 5.89378 5.93787 5.95424 6.08582 6.24539 6.32309 6.84598 7.13039 7.30398 7.54097 7.55663 7.81379 7.95236 8.04681 8.59402 9.16463 9.52362 10.03670 10.74430 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.041627 B = 0.001766 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.485036 B =15850.975037 C =16105.880261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.090 4.090 3 H 0.105 0.895 4 C -0.125 4.125 5 C 0.519 3.481 6 N -0.857 5.857 7 O -0.541 6.541 8 C 0.533 3.467 9 O -0.543 6.543 10 N -0.615 5.615 11 C 0.100 3.900 12 C -0.170 4.170 13 C 0.080 3.920 14 H 0.095 0.905 15 N -0.658 5.658 16 C 0.052 3.948 17 C 0.439 3.561 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 C 0.115 3.885 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.403 0.597 35 H 0.401 0.599 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.353 0.647 41 H 0.046 0.954 42 H 0.087 0.913 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.080 0.920 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.518 -2.670 -27.530 28.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.111 4.111 3 H 0.123 0.877 4 C -0.165 4.165 5 C 0.305 3.695 6 N -0.421 5.421 7 O -0.419 6.419 8 C 0.321 3.679 9 O -0.420 6.420 10 N -0.350 5.350 11 C -0.023 4.023 12 C -0.210 4.210 13 C -0.032 4.032 14 H 0.113 0.887 15 N -0.290 5.290 16 C -0.080 4.080 17 C 0.225 3.775 18 O -0.467 6.467 19 N -0.199 5.199 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.007 4.007 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.231 0.769 35 H 0.232 0.768 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.174 0.826 41 H 0.064 0.936 42 H 0.106 0.894 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.098 0.902 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.805 -3.359 -27.162 27.978 hybrid contribution -0.129 0.981 0.325 1.041 sum -5.935 -2.379 -26.837 27.588 Atomic orbital electron populations 1.22056 0.92311 1.02601 1.04439 1.20938 0.98417 1.00820 0.90967 0.87748 1.21467 1.04054 1.00121 0.90904 1.20677 0.78283 0.85295 0.85291 1.43891 1.60220 1.29652 1.08291 1.90723 1.39734 1.24649 1.86746 1.20244 0.79916 0.84366 0.83327 1.90711 1.38435 1.26626 1.86225 1.48493 1.51276 1.29640 1.05571 1.22410 0.94966 0.87665 0.97243 1.23640 1.03115 0.98968 0.95296 1.22609 0.96030 0.93771 0.90759 0.88673 1.59957 1.12199 1.55361 1.01440 1.21687 0.96503 0.99617 0.90222 1.19789 0.89414 0.84384 0.83927 1.90534 1.18383 1.55383 1.82404 1.41854 1.10555 1.59778 1.07759 1.19712 0.91837 1.43296 0.88111 0.87900 1.25262 0.96843 0.97175 0.98628 1.69612 1.14563 1.46977 1.23126 0.85850 0.80088 0.78719 0.79596 1.20432 1.20917 1.19394 1.21948 1.01146 0.96824 0.80823 0.91464 0.89623 0.92621 0.87772 0.87964 0.76863 0.76837 0.90734 0.90300 0.90115 0.89469 0.82580 0.93616 0.89449 0.77454 0.91868 0.90203 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 8.74 37.16 0.32 -0.89 16 2 C -0.09 -0.78 1.72 -91.77 -0.16 -0.93 16 3 H 0.10 0.91 7.66 -51.93 -0.40 0.51 16 4 C -0.13 -0.90 4.52 -27.88 -0.13 -1.03 16 5 C 0.52 3.86 7.82 -10.98 -0.09 3.77 16 6 N -0.86 -3.32 8.87 31.22 0.28 -3.04 16 7 O -0.54 -5.94 14.80 5.56 0.08 -5.85 16 8 C 0.53 6.10 7.22 -10.99 -0.08 6.02 16 9 O -0.54 -8.00 16.26 5.56 0.09 -7.91 16 10 N -0.62 -6.55 3.33 -170.31 -0.57 -7.11 16 11 C 0.10 0.80 5.13 -2.53 -0.01 0.79 16 12 C -0.17 -1.53 6.63 -24.58 -0.16 -1.69 16 13 C 0.08 0.90 3.23 -65.88 -0.21 0.69 16 14 H 0.10 0.99 7.89 -51.93 -0.41 0.58 16 15 N -0.66 -10.00 5.92 -106.05 -0.63 -10.63 16 16 C 0.05 0.86 6.02 -4.98 -0.03 0.83 16 17 C 0.44 10.15 7.82 -10.98 -0.09 10.06 16 18 O -0.58 -15.69 15.78 5.55 0.09 -15.60 16 19 N -0.56 -14.03 5.29 -10.96 -0.06 -14.09 16 20 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 24 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 C 0.12 1.39 6.65 -2.92 -0.02 1.37 16 29 H 0.07 0.47 4.99 -51.93 -0.26 0.21 16 30 H 0.09 0.75 5.95 -51.93 -0.31 0.44 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.10 0.73 7.96 -51.93 -0.41 0.32 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.40 0.52 8.83 -40.82 -0.36 0.16 16 35 H 0.40 1.23 8.93 -40.82 -0.36 0.86 16 36 H 0.07 0.50 7.07 -51.93 -0.37 0.13 16 37 H 0.08 0.55 7.35 -51.93 -0.38 0.17 16 38 H 0.08 0.78 7.82 -51.92 -0.41 0.38 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.35 5.63 8.00 -39.29 -0.31 5.32 16 41 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 42 H 0.09 1.33 8.09 -51.93 -0.42 0.91 16 43 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 44 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 45 H 0.08 1.12 8.03 -51.93 -0.42 0.70 16 46 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 377.49 15.07 5.69 5.69 Total: -1.00 -35.39 377.49 -6.98 -42.37 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -6.77 Total: 12.76 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: -0.89 Total: 11.04 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.25 Total: -58.42 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: 0.26 Total: -29.36 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.39 -6.98 -42.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490836441.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.375 kcal (2) G-P(sol) polarization free energy of solvation -35.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds