Wall clock time and date at job start Fri Apr 10 2020 18:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47040 * 2 1 4 4 C 1.52998 * 109.46940 * 240.00195 * 2 1 3 5 5 C 1.50706 * 109.47241 * 65.00164 * 4 2 1 6 6 N 1.34779 * 120.00042 * 180.02562 * 5 4 2 7 7 O 1.21277 * 119.99639 * 359.97438 * 5 4 2 8 8 C 1.50698 * 109.47012 * 120.00398 * 2 1 3 9 9 O 1.21280 * 119.99745 * 120.00343 * 8 2 1 10 10 N 1.34774 * 119.99753 * 299.99672 * 8 2 1 11 11 C 1.47425 * 125.65138 * 0.02907 * 10 8 2 12 12 C 1.54908 * 104.92961 * 204.15299 * 11 10 8 13 13 C 1.55154 * 101.58289 * 322.93718 * 12 11 10 14 14 H 1.08997 * 110.72022 * 277.13434 * 13 12 11 15 15 N 1.46899 * 110.72080 * 154.04273 * 13 12 11 16 16 C 1.46895 * 111.00137 * 86.45199 * 15 13 12 17 17 C 1.50705 * 109.47230 * 179.97438 * 16 15 13 18 18 O 1.21288 * 119.99752 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99696 * 180.02562 * 17 16 15 20 20 C 1.37102 * 119.99486 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00291 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99845 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99708 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00007 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47461 * 90.00003 * 24 22 20 26 26 H 1.48497 * 109.47346 * 210.00076 * 24 22 20 27 27 H 1.48499 * 109.47451 * 330.00033 * 24 22 20 28 28 C 1.47290 * 125.79121 * 180.02562 * 10 8 2 29 29 H 1.08998 * 109.47139 * 299.99584 * 1 2 3 30 30 H 1.09002 * 109.47043 * 60.00198 * 1 2 3 31 31 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47153 * 184.99878 * 4 2 1 33 33 H 1.08992 * 109.47505 * 304.99892 * 4 2 1 34 34 H 0.96998 * 120.00057 * 359.97438 * 6 5 4 35 35 H 0.96998 * 119.99716 * 179.97438 * 6 5 4 36 36 H 1.09002 * 110.36696 * 85.25946 * 11 10 8 37 37 H 1.08995 * 110.36608 * 323.04783 * 11 10 8 38 38 H 1.09008 * 111.00494 * 81.01141 * 12 11 10 39 39 H 1.08999 * 111.00647 * 204.85975 * 12 11 10 40 40 H 1.00900 * 111.00125 * 322.49562 * 15 13 12 41 41 H 1.09003 * 109.47306 * 300.00141 * 16 15 13 42 42 H 1.09005 * 109.47380 * 59.99997 * 16 15 13 43 43 H 0.96993 * 120.00303 * 0.02562 * 19 17 16 44 44 H 0.97001 * 119.99555 * 179.97438 * 23 22 20 45 45 H 1.09004 * 109.85762 * 59.50172 * 28 10 8 46 46 H 1.08995 * 110.00297 * 298.43119 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 7 1.9844 -0.3918 -3.7003 7 8 1.0110 1.0870 -2.3633 8 6 2.0323 -0.7105 1.2304 9 8 2.7296 -1.6965 1.1190 10 7 1.7068 -0.2500 2.4545 11 6 0.8706 0.9316 2.7337 12 6 1.2937 1.3943 4.1502 13 6 1.5379 0.0371 4.8612 14 1 0.6001 -0.3809 5.2270 15 7 2.4995 0.1921 5.9610 16 6 1.8217 0.5970 7.1997 17 6 2.8377 0.7451 8.3029 18 8 4.0110 0.5346 8.0790 19 7 2.4424 1.1115 9.5382 20 6 3.3666 1.2457 10.5419 21 1 4.4114 1.0583 10.3426 22 6 2.9593 1.6240 11.8154 23 7 1.6881 1.8525 12.0578 24 14 4.2185 1.8075 13.1828 25 1 4.7289 3.2020 13.2019 26 1 3.5817 1.4956 14.4875 27 1 5.3464 0.8710 12.9461 28 6 2.1255 -0.8415 3.7368 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1264 -0.7994 -1.2057 33 1 1.6054 -1.7197 -1.2952 34 1 2.4883 -1.2157 -3.7909 35 1 1.7275 0.1091 -4.4902 36 1 -0.1851 0.6604 2.7228 37 1 1.0674 1.7166 2.0036 38 1 2.2090 1.9852 4.1110 39 1 0.4918 1.9508 4.6352 40 1 3.2266 0.8473 5.7159 41 1 1.3146 1.5489 7.0421 42 1 1.0909 -0.1621 7.4789 43 1 1.5041 1.2795 9.7173 44 1 1.4037 2.1162 12.9469 45 1 3.2135 -0.8497 3.8030 46 1 1.7415 -1.8580 3.8216 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490836441.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:23 Heat of formation + Delta-G solvation = -141.238812 kcal Electronic energy + Delta-G solvation = -27212.943430 eV Core-core repulsion = 23135.853873 eV Total energy + Delta-G solvation = -4077.089558 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.55103 -40.47554 -40.08448 -38.83826 -36.21208 -35.66097 -35.08414 -34.62149 -33.25826 -31.59228 -30.13323 -28.77440 -27.73928 -26.01810 -25.05524 -23.49992 -21.96769 -21.37030 -21.05722 -20.08167 -19.91330 -18.69557 -18.05663 -17.74056 -17.40844 -17.25372 -16.82219 -16.59782 -16.34626 -16.15336 -15.85534 -15.37444 -15.24408 -14.86700 -14.78916 -14.32074 -14.15257 -14.08650 -13.75763 -13.56304 -13.48093 -13.45284 -13.19237 -12.97031 -12.84033 -12.66765 -12.43692 -12.39386 -12.14951 -12.12075 -12.00205 -11.75870 -11.49934 -11.02987 -10.81929 -10.55806 -10.34748 -10.00310 -9.71481 -9.30651 -8.46022 -5.94398 1.38495 1.42678 1.54998 1.55659 1.64357 1.81658 2.06906 2.30153 2.66338 2.92147 3.21567 3.37061 3.47269 3.58035 3.71569 3.91971 3.94962 4.07966 4.16001 4.26262 4.29989 4.36970 4.39782 4.52360 4.60906 4.64006 4.67325 4.71664 4.82248 4.85534 4.95848 4.98504 5.05876 5.10744 5.24116 5.33470 5.42053 5.89961 5.93979 6.10932 6.34326 6.44758 6.47951 6.61499 7.06737 7.13961 7.36233 7.57829 8.13601 8.71155 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.041627 B = 0.001766 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.485036 B =15850.975037 C =16105.880261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.084 4.084 3 H 0.106 0.894 4 C -0.123 4.123 5 C 0.520 3.480 6 N -0.839 5.839 7 O -0.580 6.580 8 C 0.529 3.471 9 O -0.582 6.582 10 N -0.615 5.615 11 C 0.100 3.900 12 C -0.162 4.162 13 C 0.085 3.915 14 H 0.113 0.887 15 N -0.677 5.677 16 C 0.069 3.931 17 C 0.435 3.565 18 O -0.627 6.627 19 N -0.572 5.572 20 C -0.335 4.335 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.918 5.918 24 Si 0.991 3.009 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.275 1.275 28 C 0.117 3.883 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.417 0.583 35 H 0.408 0.592 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.108 0.892 40 H 0.346 0.654 41 H 0.076 0.924 42 H 0.108 0.892 43 H 0.398 0.602 44 H 0.278 0.722 45 H 0.052 0.948 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.088 -2.120 -28.281 29.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 H 0.124 0.876 4 C -0.163 4.163 5 C 0.306 3.694 6 N -0.403 5.403 7 O -0.460 6.460 8 C 0.319 3.681 9 O -0.463 6.463 10 N -0.348 5.348 11 C -0.022 4.022 12 C -0.202 4.202 13 C -0.026 4.026 14 H 0.131 0.869 15 N -0.308 5.308 16 C -0.063 4.063 17 C 0.223 3.777 18 O -0.513 6.513 19 N -0.209 5.209 20 C -0.465 4.465 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.559 5.559 24 Si 0.815 3.185 25 H -0.196 1.196 26 H -0.195 1.195 27 H -0.200 1.200 28 C -0.006 4.006 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.248 0.752 35 H 0.240 0.760 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.127 0.873 40 H 0.166 0.834 41 H 0.094 0.906 42 H 0.126 0.874 43 H 0.232 0.768 44 H 0.087 0.913 45 H 0.071 0.929 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.411 -2.814 -27.948 29.051 hybrid contribution 0.393 0.759 0.483 0.982 sum -7.018 -2.055 -27.465 28.422 Atomic orbital electron populations 1.21998 0.91337 1.02727 1.04619 1.20922 0.99083 1.00482 0.90040 0.87625 1.21441 1.04098 1.00305 0.90438 1.20655 0.77903 0.84737 0.86108 1.43743 1.59127 1.29937 1.07478 1.90708 1.41714 1.26241 1.87326 1.20774 0.79239 0.83947 0.84139 1.90688 1.40264 1.28498 1.86831 1.48575 1.51201 1.30174 1.04870 1.22624 0.95620 0.86957 0.96990 1.23591 1.03528 0.97504 0.95577 1.22612 0.95436 0.95172 0.89344 0.86903 1.59898 1.13251 1.55440 1.02235 1.21535 0.94543 1.01887 0.88301 1.20965 0.90123 0.82024 0.84572 1.90504 1.20909 1.56689 1.83228 1.41911 1.10363 1.60505 1.08147 1.19654 0.91473 1.45527 0.89832 0.90500 1.25996 0.98757 0.96236 1.00110 1.69663 1.15584 1.46731 1.23926 0.84952 0.77705 0.78699 0.77124 1.19610 1.19523 1.20018 1.21804 0.99575 0.97081 0.82188 0.90368 0.90271 0.92502 0.87724 0.87213 0.75192 0.76035 0.88438 0.88810 0.90998 0.87340 0.83402 0.90594 0.87424 0.76832 0.91297 0.92915 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.74 71.98 0.63 -1.43 16 2 C -0.08 -1.36 1.72 -11.54 -0.02 -1.38 16 3 H 0.11 1.71 7.66 -2.39 -0.02 1.69 16 4 C -0.12 -1.66 4.52 29.85 0.13 -1.52 16 5 C 0.52 7.14 7.82 87.66 0.69 7.82 16 6 N -0.84 -5.18 8.87 -173.53 -1.54 -6.72 16 7 O -0.58 -12.19 14.80 -3.02 -0.04 -12.24 16 8 C 0.53 11.80 7.22 87.66 0.63 12.43 16 9 O -0.58 -17.35 16.26 -3.03 -0.05 -17.40 16 10 N -0.62 -12.37 3.33 -811.12 -2.70 -15.07 16 11 C 0.10 1.33 5.13 86.85 0.45 1.77 16 12 C -0.16 -2.48 6.63 31.98 0.21 -2.27 16 13 C 0.09 1.75 3.23 46.10 0.15 1.90 16 14 H 0.11 1.98 7.89 -2.39 -0.02 1.96 16 15 N -0.68 -20.00 5.92 -489.45 -2.90 -22.89 16 16 C 0.07 2.18 6.02 85.56 0.52 2.69 16 17 C 0.44 20.21 7.82 87.66 0.69 20.89 16 18 O -0.63 -34.63 15.78 -3.05 -0.05 -34.67 16 19 N -0.57 -28.75 5.29 -306.98 -1.62 -30.37 16 20 C -0.34 -18.94 9.68 84.04 0.81 -18.12 16 21 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 22 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 23 N -0.92 -48.83 13.05 21.66 0.28 -48.55 16 24 Si 0.99 42.77 29.55 68.60 2.03 44.79 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 27 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 28 C 0.12 2.78 6.65 86.68 0.58 3.35 16 29 H 0.08 0.87 4.99 -2.39 -0.01 0.86 16 30 H 0.08 1.27 5.95 -2.39 -0.01 1.25 16 31 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.10 1.41 7.96 -2.38 -0.02 1.39 16 33 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.42 0.31 8.83 -92.71 -0.82 -0.51 16 35 H 0.41 1.83 8.93 -92.71 -0.83 1.01 16 36 H 0.10 0.92 7.07 -2.39 -0.02 0.90 16 37 H 0.09 1.03 7.35 -2.39 -0.02 1.01 16 38 H 0.07 1.26 7.82 -2.38 -0.02 1.24 16 39 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.35 11.04 8.00 -89.69 -0.72 10.32 16 41 H 0.08 1.97 8.13 -2.39 -0.02 1.95 16 42 H 0.11 3.00 8.09 -2.38 -0.02 2.98 16 43 H 0.40 18.75 7.90 -92.71 -0.73 18.02 16 44 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 45 H 0.05 1.53 8.03 -2.38 -0.02 1.51 16 46 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -78.44 377.49 -2.70 -81.14 By element: Atomic # 1 Polarization: 37.97 SS G_CDS: -2.04 Total: 35.93 kcal Atomic # 6 Polarization: 20.11 SS G_CDS: 5.93 Total: 26.04 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -8.48 Total: -123.60 kcal Atomic # 8 Polarization: -64.17 SS G_CDS: -0.14 Total: -64.31 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -78.44 -2.70 -81.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490836441.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.097 kcal (2) G-P(sol) polarization free energy of solvation -78.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds