Wall clock time and date at job start Fri Apr 10 2020 18:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 109.47319 * 2 1 4 4 C 1.53001 * 109.47164 * 240.00044 * 2 1 3 5 5 C 1.50697 * 109.47334 * 65.00014 * 4 2 1 6 6 N 1.34775 * 120.00450 * 180.02562 * 5 4 2 7 7 O 1.21289 * 119.99788 * 359.97438 * 5 4 2 8 8 C 1.50697 * 109.46856 * 120.00154 * 2 1 3 9 9 O 1.21287 * 120.00107 * 120.00182 * 8 2 1 10 10 N 1.34774 * 120.00018 * 299.99784 * 8 2 1 11 11 C 1.46504 * 119.99770 * 180.02562 * 10 8 2 12 12 H 1.09001 * 112.84997 * 23.80533 * 11 10 8 13 13 C 1.53784 * 113.61121 * 154.99754 * 11 10 8 14 14 C 1.53781 * 87.07945 * 140.06471 * 13 11 10 15 15 H 1.08998 * 113.61689 * 89.20165 * 14 13 11 16 16 N 1.46905 * 113.61668 * 220.01945 * 14 13 11 17 17 C 1.46902 * 110.99800 * 204.99938 * 16 14 13 18 18 C 1.50706 * 109.46577 * 180.02562 * 17 16 14 19 19 O 1.21288 * 120.00224 * 359.72334 * 18 17 16 20 20 N 1.34777 * 119.99766 * 179.97438 * 18 17 16 21 21 C 1.37095 * 119.99970 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99992 * 0.02562 * 21 20 18 23 23 C 1.38956 * 120.00025 * 180.02562 * 21 20 18 24 24 N 1.31404 * 120.00146 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99914 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47174 * 90.00084 * 25 23 21 27 27 H 1.48506 * 109.46994 * 210.00390 * 25 23 21 28 28 H 1.48504 * 109.46913 * 329.99834 * 25 23 21 29 29 C 1.53781 * 87.08386 * 334.56872 * 14 13 11 30 30 H 1.08994 * 109.47515 * 300.00228 * 1 2 3 31 31 H 1.09007 * 109.46853 * 59.99996 * 1 2 3 32 32 H 1.08999 * 109.47586 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47350 * 185.00394 * 4 2 1 34 34 H 1.09008 * 109.47209 * 305.00203 * 4 2 1 35 35 H 0.97002 * 119.99319 * 359.97438 * 6 5 4 36 36 H 0.96997 * 119.99982 * 180.02562 * 6 5 4 37 37 H 0.96996 * 120.00187 * 359.97438 * 10 8 2 38 38 H 1.09003 * 113.61217 * 25.52125 * 13 11 10 39 39 H 1.08996 * 113.61830 * 254.61260 * 13 11 10 40 40 H 1.00898 * 110.99743 * 81.04988 * 16 14 13 41 41 H 1.09000 * 109.47263 * 60.00269 * 17 16 14 42 42 H 1.09001 * 109.47582 * 299.99548 * 17 16 14 43 43 H 0.96999 * 120.00043 * 0.02562 * 20 18 17 44 44 H 0.96996 * 120.00328 * 179.97438 * 24 23 21 45 45 H 1.09006 * 113.61860 * 139.97810 * 29 14 13 46 46 H 1.09005 * 113.61566 * 270.88215 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0570 -2.4766 6 7 1.9844 -0.3919 -3.7002 7 8 1.0109 1.0870 -2.3633 8 6 2.0322 -0.7104 1.2304 9 8 2.7295 -1.6966 1.1192 10 7 1.7066 -0.2500 2.4545 11 6 2.1954 -0.9404 3.6507 12 1 3.1009 -1.5182 3.4656 13 6 2.2849 -0.0354 4.8908 14 6 1.7533 -1.2284 5.7026 15 1 2.5380 -1.8843 6.0798 16 7 0.7803 -0.8502 6.7362 17 6 0.7539 -1.8398 7.8216 18 6 -0.2538 -1.4192 8.8603 19 8 -0.8840 -0.3933 8.7134 20 7 -0.4511 -2.1805 9.9548 21 6 -1.3674 -1.7976 10.9000 22 1 -1.9315 -0.8862 10.7672 23 6 -1.5705 -2.5822 12.0287 24 7 -2.4491 -2.2156 12.9344 25 14 -0.5943 -4.1582 12.2586 26 1 0.6599 -3.8605 12.9959 27 1 -1.4039 -5.1335 13.0325 28 1 -0.2631 -4.7335 10.9303 29 6 1.1057 -1.7258 4.3995 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1263 -0.7995 -1.2056 34 1 1.6053 -1.7199 -1.2952 35 1 2.4883 -1.2158 -3.7907 36 1 1.7281 0.1093 -4.4901 37 1 1.1493 0.5389 2.5435 38 1 1.6009 0.8129 4.8626 39 1 3.3042 0.2499 5.1506 40 1 -0.1387 -0.7247 6.3390 41 1 1.7415 -1.9046 8.2783 42 1 0.4752 -2.8136 7.4190 43 1 0.0558 -2.9988 10.0742 44 1 -2.5912 -2.7634 13.7221 45 1 1.1733 -2.8051 4.2624 46 1 0.0994 -1.3396 4.2369 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491042046.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:25 Heat of formation + Delta-G solvation = -128.762162 kcal Electronic energy + Delta-G solvation = -26681.596019 eV Core-core repulsion = 22605.047490 eV Total energy + Delta-G solvation = -4076.548529 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.47416 -40.61723 -40.19233 -39.36627 -36.15229 -35.47637 -35.19314 -34.62465 -33.76988 -33.34117 -28.93886 -28.49314 -26.60456 -26.20133 -25.27106 -23.38694 -21.66412 -21.42608 -21.10604 -20.54936 -20.09038 -18.61578 -18.08462 -17.84029 -17.27469 -17.02579 -16.93966 -16.63346 -16.48988 -16.15593 -15.84419 -15.44496 -15.30235 -14.92477 -14.67855 -14.48537 -14.33130 -14.08970 -14.05761 -13.76368 -13.43132 -13.34377 -13.16139 -12.97752 -12.84910 -12.40773 -12.21089 -12.15865 -12.06718 -11.99639 -11.86798 -11.72764 -11.50582 -11.00997 -10.74601 -10.54772 -10.41212 -10.24190 -10.00862 -9.22242 -8.40829 -6.01779 1.30921 1.36551 1.45228 1.60112 1.65372 1.96636 2.10341 2.23664 2.71047 2.82765 3.15714 3.39175 3.54666 3.64921 3.72079 3.90677 3.96353 3.97963 4.03483 4.18013 4.19657 4.41279 4.48167 4.53217 4.64863 4.66824 4.72880 4.82009 4.83660 4.93585 5.02624 5.07503 5.11613 5.15180 5.32279 5.53217 5.60133 5.93144 5.94057 6.12839 6.40425 6.46639 6.55886 6.60651 6.88742 7.22433 7.37159 7.40605 7.97289 8.76827 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.033565 B = 0.001677 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.994552 B =16693.369208 C =16932.199083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 H 0.109 0.891 4 C -0.121 4.121 5 C 0.517 3.483 6 N -0.840 5.840 7 O -0.583 6.583 8 C 0.521 3.479 9 O -0.577 6.577 10 N -0.708 5.708 11 C 0.128 3.872 12 H 0.110 0.890 13 C -0.126 4.126 14 C 0.069 3.931 15 H 0.115 0.885 16 N -0.671 5.671 17 C 0.061 3.939 18 C 0.447 3.553 19 O -0.615 6.615 20 N -0.591 5.591 21 C -0.330 4.330 22 H 0.055 0.945 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.965 3.035 26 H -0.257 1.257 27 H -0.276 1.276 28 H -0.231 1.231 29 C -0.175 4.175 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.417 0.583 36 H 0.407 0.593 37 H 0.413 0.587 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.346 0.654 41 H 0.116 0.884 42 H 0.076 0.924 43 H 0.390 0.610 44 H 0.279 0.721 45 H 0.071 0.929 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.117 -3.183 -31.970 35.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.126 0.874 4 C -0.161 4.161 5 C 0.303 3.697 6 N -0.403 5.403 7 O -0.463 6.463 8 C 0.308 3.692 9 O -0.457 6.457 10 N -0.358 5.358 11 C 0.022 3.978 12 H 0.127 0.873 13 C -0.165 4.165 14 C -0.042 4.042 15 H 0.133 0.867 16 N -0.303 5.303 17 C -0.071 4.071 18 C 0.235 3.765 19 O -0.500 6.500 20 N -0.233 5.233 21 C -0.460 4.460 22 H 0.073 0.927 23 C -0.213 4.213 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.182 1.182 27 H -0.201 1.201 28 H -0.154 1.154 29 C -0.215 4.215 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.248 0.752 36 H 0.239 0.761 37 H 0.249 0.751 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.166 0.834 41 H 0.134 0.866 42 H 0.094 0.906 43 H 0.225 0.775 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 15.123 -2.187 -31.355 34.880 hybrid contribution -0.714 -1.110 0.031 1.320 sum 14.409 -3.297 -31.324 34.637 Atomic orbital electron populations 1.21860 0.92006 1.02437 1.04016 1.20987 0.98429 1.00944 0.90914 0.87352 1.21436 1.04308 1.00115 0.90260 1.20779 0.77871 0.84774 0.86259 1.43761 1.59148 1.29910 1.07521 1.90721 1.41769 1.26452 1.87373 1.20902 0.78947 0.83869 0.85447 1.90676 1.39790 1.27842 1.87402 1.45946 1.52921 1.31977 1.04954 1.22270 0.97685 0.94972 0.82853 0.87251 1.23412 1.02682 0.97625 0.92770 1.22963 0.95464 0.97350 0.88397 0.86674 1.60034 1.12582 1.46443 1.11206 1.21699 0.98889 0.94926 0.91616 1.21057 0.86493 0.84834 0.84090 1.90541 1.52816 1.27638 1.78979 1.42038 1.37668 1.23757 1.19809 1.19019 1.17557 1.08960 1.00425 0.92717 1.26118 0.98004 1.02820 0.94381 1.69801 1.35481 1.40988 1.11240 0.85360 0.78640 0.76990 0.80489 1.18156 1.20084 1.15394 1.24165 0.99431 1.01090 0.96842 0.91226 0.90663 0.92564 0.87200 0.87360 0.75159 0.76148 0.75071 0.89224 0.89753 0.83417 0.86639 0.90605 0.77451 0.91157 0.90992 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.83 71.98 0.64 -1.32 16 2 C -0.09 -1.23 2.37 -11.54 -0.03 -1.25 16 3 H 0.11 1.43 7.95 -2.39 -0.02 1.41 16 4 C -0.12 -1.34 4.52 29.85 0.13 -1.20 16 5 C 0.52 6.48 7.82 87.66 0.69 7.16 16 6 N -0.84 -4.26 8.87 -173.53 -1.54 -5.80 16 7 O -0.58 -11.98 14.80 -3.06 -0.05 -12.03 16 8 C 0.52 8.91 7.15 87.66 0.63 9.54 16 9 O -0.58 -13.51 15.52 -3.05 -0.05 -13.55 16 10 N -0.71 -10.31 5.25 -440.02 -2.31 -12.62 16 11 C 0.13 2.04 4.24 45.52 0.19 2.24 16 12 H 0.11 1.94 7.46 -2.39 -0.02 1.93 16 13 C -0.13 -2.05 7.63 31.12 0.24 -1.82 16 14 C 0.07 1.29 4.18 45.44 0.19 1.48 16 15 H 0.12 1.84 7.87 -2.39 -0.02 1.82 16 16 N -0.67 -18.38 6.24 -492.83 -3.08 -21.46 16 17 C 0.06 1.78 6.01 85.56 0.51 2.29 16 18 C 0.45 19.92 7.82 87.66 0.69 20.61 16 19 O -0.62 -33.87 15.78 -3.05 -0.05 -33.92 16 20 N -0.59 -27.66 5.09 -306.98 -1.56 -29.22 16 21 C -0.33 -19.37 10.16 84.04 0.85 -18.51 16 22 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 23 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 24 N -0.93 -56.37 13.96 21.66 0.30 -56.07 16 25 Si 0.97 38.56 27.74 68.60 1.90 40.47 16 26 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 27 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 28 H -0.23 -7.70 6.52 99.48 0.65 -7.05 16 29 C -0.17 -3.00 7.50 31.12 0.23 -2.76 16 30 H 0.07 0.80 7.56 -2.39 -0.02 0.78 16 31 H 0.07 1.24 5.95 -2.38 -0.01 1.23 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.11 1.09 7.95 -2.39 -0.02 1.07 16 34 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.42 -0.27 8.83 -92.71 -0.82 -1.09 16 36 H 0.41 1.54 8.93 -92.71 -0.83 0.71 16 37 H 0.41 4.55 8.15 -92.71 -0.76 3.80 16 38 H 0.09 1.55 8.12 -2.39 -0.02 1.53 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.35 10.23 7.90 -89.70 -0.71 9.52 16 41 H 0.12 2.81 8.13 -2.39 -0.02 2.79 16 42 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.39 15.01 5.76 -92.71 -0.53 14.47 16 44 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 45 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 46 H 0.08 1.54 7.82 -2.38 -0.02 1.52 16 Total: -1.00 -84.88 382.52 -3.63 -88.51 By element: Atomic # 1 Polarization: 42.23 SS G_CDS: -2.64 Total: 39.59 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 5.43 Total: 16.10 kcal Atomic # 7 Polarization: -116.99 SS G_CDS: -8.19 Total: -125.17 kcal Atomic # 8 Polarization: -59.36 SS G_CDS: -0.14 Total: -59.50 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 1.90 Total: 40.47 kcal Total: -84.88 -3.63 -88.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491042046.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.253 kcal (2) G-P(sol) polarization free energy of solvation -84.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds