Wall clock time and date at job start Fri Apr 10 2020 18:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47024 * 2 1 4 4 C 1.53004 * 109.47447 * 119.99975 * 2 1 3 5 5 C 1.50700 * 109.46728 * 295.00183 * 4 2 1 6 6 N 1.34778 * 119.99492 * 180.02562 * 5 4 2 7 7 O 1.21279 * 120.00493 * 359.97438 * 5 4 2 8 8 C 1.50702 * 109.47032 * 239.99892 * 2 1 3 9 9 O 1.21276 * 120.00110 * 239.99637 * 8 2 1 10 10 N 1.34783 * 120.00092 * 59.99974 * 8 2 1 11 11 C 1.46499 * 120.00079 * 179.97438 * 10 8 2 12 12 H 1.08993 * 112.84677 * 23.79834 * 11 10 8 13 13 C 1.53773 * 113.61087 * 154.99969 * 11 10 8 14 14 C 1.53785 * 87.08236 * 140.06316 * 13 11 10 15 15 H 1.09003 * 113.61145 * 89.19559 * 14 13 11 16 16 N 1.46896 * 113.61857 * 220.01476 * 14 13 11 17 17 C 1.46899 * 111.00338 * 203.46654 * 16 14 13 18 18 C 1.50698 * 109.46987 * 179.97438 * 17 16 14 19 19 O 1.21293 * 120.00006 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99538 * 179.97438 * 18 17 16 21 21 C 1.37104 * 119.99773 * 179.72591 * 20 18 17 22 22 H 1.08002 * 119.99671 * 0.27660 * 21 20 18 23 23 C 1.38950 * 120.00030 * 180.27703 * 21 20 18 24 24 N 1.31413 * 119.99930 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99918 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47112 * 89.99702 * 25 23 21 27 27 H 1.48498 * 109.47011 * 209.99970 * 25 23 21 28 28 H 1.48494 * 109.47201 * 329.99943 * 25 23 21 29 29 C 1.53787 * 87.17021 * 334.60998 * 14 13 11 30 30 H 1.08998 * 109.47506 * 299.99855 * 1 2 3 31 31 H 1.08995 * 109.47403 * 60.00609 * 1 2 3 32 32 H 1.09006 * 109.47121 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47019 * 55.00028 * 4 2 1 34 34 H 1.08998 * 109.47071 * 175.00046 * 4 2 1 35 35 H 0.97001 * 120.00283 * 359.97438 * 6 5 4 36 36 H 0.97001 * 119.99842 * 180.02562 * 6 5 4 37 37 H 0.97005 * 119.99476 * 359.97438 * 10 8 2 38 38 H 1.08999 * 113.62023 * 25.51422 * 13 11 10 39 39 H 1.08998 * 113.61541 * 254.60781 * 13 11 10 40 40 H 1.00900 * 110.99693 * 79.51181 * 16 14 13 41 41 H 1.09003 * 109.46477 * 60.00383 * 17 16 14 42 42 H 1.08993 * 109.47002 * 300.00709 * 17 16 14 43 43 H 0.97001 * 120.00485 * 0.02562 * 20 18 17 44 44 H 0.96999 * 119.99993 * 179.97438 * 24 23 21 45 45 H 1.08995 * 113.61428 * 139.94361 * 29 14 13 46 46 H 1.09004 * 113.60823 * 270.84369 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 7 1.9854 -0.3913 3.7001 7 8 1.0117 1.0874 2.3633 8 6 2.0323 -0.7104 -1.2305 9 8 2.7296 -1.6964 -1.1192 10 7 1.7067 -0.2500 -2.4546 11 6 2.1954 -0.9403 -3.6508 12 1 2.4392 -1.9864 -3.4658 13 6 1.3126 -0.7234 -4.8910 14 6 2.6148 -0.6187 -5.7025 15 1 2.9723 -1.5768 -6.0797 16 7 2.5820 0.4248 -6.7359 17 6 3.5501 0.1395 -7.8032 18 6 3.4872 1.2286 -8.8428 19 8 2.7125 2.1520 -8.7076 20 7 4.2927 1.1772 -9.9222 21 6 4.2315 2.1651 -10.8708 22 1 3.5411 2.9869 -10.7509 23 6 5.0578 2.1091 -11.9866 24 7 4.9988 3.0558 -12.8961 25 14 6.2514 0.6873 -12.1944 26 1 5.5869 -0.4120 -12.9394 27 1 7.4434 1.1482 -12.9507 28 1 6.6729 0.1955 -10.8581 29 6 3.3012 -0.1746 -4.4000 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6055 -1.7197 1.2952 34 1 3.1264 -0.7994 1.2055 35 1 2.4894 -1.2152 3.7907 36 1 1.7285 0.1094 4.4901 37 1 1.1487 0.5385 -2.5436 38 1 0.7401 0.2037 -4.8628 39 1 0.7046 -1.5898 -5.1512 40 1 2.7443 1.3362 -6.3346 41 1 3.3095 -0.8179 -8.2655 42 1 4.5541 0.0969 -7.3811 43 1 4.9125 0.4389 -10.0301 44 1 5.5759 3.0169 -13.6748 45 1 4.2961 -0.5985 -4.2642 46 1 3.2732 0.9029 -4.2372 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491042048.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:28 Heat of formation + Delta-G solvation = -95.580111 kcal Electronic energy + Delta-G solvation = -26649.374395 eV Core-core repulsion = 22574.264747 eV Total energy + Delta-G solvation = -4075.109648 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.77787 -39.89734 -38.88978 -38.13416 -34.73951 -34.57560 -34.16463 -33.88525 -32.45610 -31.63468 -28.34384 -27.07046 -25.84946 -25.09503 -23.93268 -22.53549 -21.05870 -20.51768 -19.82836 -19.29937 -18.30514 -18.04652 -17.61865 -16.79144 -16.44674 -16.08838 -15.87529 -15.58487 -15.24596 -14.95403 -14.82865 -14.48309 -14.11591 -13.88026 -13.60574 -13.34768 -13.19433 -13.06919 -12.85476 -12.62326 -12.40665 -12.35644 -12.09837 -11.80678 -11.68749 -11.54738 -11.31031 -11.18558 -11.03112 -10.91581 -10.59663 -10.40418 -10.19888 -9.98018 -9.92984 -9.57646 -9.27069 -8.58656 -8.19284 -8.10539 -6.31344 -3.82831 2.16010 2.32537 2.72110 3.02360 3.06892 3.14981 3.21056 3.73714 4.07692 4.09775 4.12752 4.33117 4.44446 4.46497 4.54213 4.63579 4.71992 4.77287 4.95375 4.97589 5.15706 5.22417 5.22749 5.36885 5.45496 5.56689 5.57897 5.60952 5.63854 5.73460 5.84456 5.85734 5.87028 5.89388 5.98832 6.27758 6.32521 6.79843 7.11382 7.21997 7.55110 7.58414 7.76663 7.91816 8.14272 8.59473 8.94690 9.42218 9.82350 10.81772 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.031941 B = 0.001667 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.413248 B =16788.409083 C =16946.947270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 H 0.106 0.894 4 C -0.125 4.125 5 C 0.518 3.482 6 N -0.857 5.857 7 O -0.541 6.541 8 C 0.519 3.481 9 O -0.546 6.546 10 N -0.714 5.714 11 C 0.121 3.879 12 H 0.114 0.886 13 C -0.133 4.133 14 C 0.071 3.929 15 H 0.100 0.900 16 N -0.655 5.655 17 C 0.047 3.953 18 C 0.449 3.551 19 O -0.566 6.566 20 N -0.590 5.590 21 C -0.306 4.306 22 H 0.119 0.881 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 C -0.182 4.182 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.403 0.597 36 H 0.401 0.599 37 H 0.403 0.597 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.353 0.647 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.371 0.629 44 H 0.273 0.727 45 H 0.070 0.930 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.400 -12.788 30.436 33.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.118 4.118 3 H 0.124 0.876 4 C -0.165 4.165 5 C 0.303 3.697 6 N -0.421 5.421 7 O -0.418 6.418 8 C 0.306 3.694 9 O -0.423 6.423 10 N -0.364 5.364 11 C 0.016 3.984 12 H 0.132 0.868 13 C -0.172 4.172 14 C -0.041 4.041 15 H 0.118 0.882 16 N -0.286 5.286 17 C -0.086 4.086 18 C 0.235 3.765 19 O -0.448 6.448 20 N -0.230 5.230 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.223 4.223 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.231 0.769 36 H 0.232 0.768 37 H 0.238 0.762 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.174 0.826 41 H 0.106 0.894 42 H 0.064 0.936 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.279 -12.399 29.749 32.659 hybrid contribution 1.889 -0.704 0.403 2.055 sum -3.391 -13.103 30.153 33.051 Atomic orbital electron populations 1.21917 0.92151 1.02499 1.04204 1.21024 0.98430 1.01039 0.91300 0.87561 1.21458 1.03990 1.00095 0.90958 1.20687 0.78330 0.85328 0.85310 1.43896 1.60176 1.29663 1.08326 1.90732 1.39729 1.24584 1.86732 1.20626 0.79617 0.84315 0.84861 1.90688 1.38131 1.26546 1.86959 1.45983 1.53277 1.31839 1.05348 1.22444 0.95547 0.97719 0.82706 0.86775 1.23461 0.97314 1.03201 0.93190 1.22820 0.95845 0.96355 0.89049 0.88210 1.60000 1.52318 1.05101 1.11173 1.21754 0.94291 0.99283 0.93257 1.19733 0.84299 0.88547 0.83932 1.90564 1.40139 1.36369 1.77683 1.42212 1.35850 1.24007 1.20919 1.19439 1.22016 1.03533 0.98455 0.86290 1.25040 0.97897 0.97451 0.95751 1.69623 1.39227 1.32579 1.10689 0.86665 0.81499 0.82578 0.78599 1.19589 1.20194 1.19533 1.24284 0.99173 1.01324 0.97524 0.89556 0.91967 0.92540 0.88011 0.87830 0.76888 0.76808 0.76173 0.88914 0.90546 0.82639 0.89412 0.93636 0.79678 0.91614 0.91075 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.83 37.16 0.33 -0.68 16 2 C -0.10 -0.70 2.37 -91.77 -0.22 -0.91 16 3 H 0.11 0.78 7.95 -51.93 -0.41 0.37 16 4 C -0.12 -0.76 4.52 -27.88 -0.13 -0.89 16 5 C 0.52 3.50 7.82 -10.98 -0.09 3.42 16 6 N -0.86 -2.84 8.87 31.22 0.28 -2.56 16 7 O -0.54 -5.66 14.80 5.56 0.08 -5.58 16 8 C 0.52 4.80 7.15 -10.98 -0.08 4.72 16 9 O -0.55 -6.76 15.52 5.56 0.09 -6.67 16 10 N -0.71 -5.77 5.25 -52.93 -0.28 -6.05 16 11 C 0.12 1.09 4.24 -67.03 -0.28 0.81 16 12 H 0.11 1.14 7.46 -51.93 -0.39 0.75 16 13 C -0.13 -1.22 7.63 -25.92 -0.20 -1.42 16 14 C 0.07 0.77 4.16 -66.90 -0.28 0.49 16 15 H 0.10 1.00 7.88 -51.93 -0.41 0.59 16 16 N -0.65 -9.62 6.24 -107.13 -0.67 -10.29 16 17 C 0.05 0.76 6.02 -4.98 -0.03 0.73 16 18 C 0.45 10.12 7.82 -10.99 -0.09 10.03 16 19 O -0.57 -15.11 15.78 5.55 0.09 -15.02 16 20 N -0.59 -14.02 5.09 -10.96 -0.06 -14.08 16 21 C -0.31 -8.66 10.16 -14.93 -0.15 -8.81 16 22 H 0.12 3.85 7.39 -52.49 -0.39 3.47 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.75 13.96 55.50 0.77 -24.98 16 25 Si 0.88 19.34 27.74 -169.99 -4.71 14.62 16 26 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 27 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 28 H -0.27 -5.39 6.52 56.52 0.37 -5.03 16 29 C -0.18 -1.78 7.52 -25.82 -0.19 -1.98 16 30 H 0.09 0.69 5.95 -51.93 -0.31 0.38 16 31 H 0.06 0.36 7.56 -51.93 -0.39 -0.04 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.61 7.95 -51.93 -0.41 0.20 16 35 H 0.40 0.27 8.83 -40.82 -0.36 -0.09 16 36 H 0.40 1.05 8.93 -40.82 -0.36 0.69 16 37 H 0.40 2.53 8.15 -40.82 -0.33 2.20 16 38 H 0.09 0.87 8.12 -51.93 -0.42 0.45 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.35 5.40 7.91 -39.29 -0.31 5.09 16 41 H 0.09 1.26 8.13 -51.93 -0.42 0.84 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.37 7.71 5.76 -40.82 -0.24 7.47 16 44 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.09 0.88 7.83 -51.93 -0.41 0.47 16 LS Contribution 382.56 15.07 5.77 5.77 Total: -1.00 -36.77 382.56 -6.99 -43.76 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -6.85 Total: 14.54 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -1.50 Total: 6.54 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.05 Total: -57.96 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: 0.26 Total: -27.27 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.71 Total: 14.62 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.77 -6.99 -43.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491042048.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.823 kcal (2) G-P(sol) polarization free energy of solvation -36.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds