Wall clock time and date at job start Fri Apr 10 2020 18:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47024 * 2 1 4 4 C 1.53004 * 109.47447 * 119.99975 * 2 1 3 5 5 C 1.50700 * 109.46728 * 295.00183 * 4 2 1 6 6 N 1.34778 * 119.99492 * 180.02562 * 5 4 2 7 7 O 1.21279 * 120.00493 * 359.97438 * 5 4 2 8 8 C 1.50702 * 109.47032 * 239.99892 * 2 1 3 9 9 O 1.21276 * 120.00110 * 239.99637 * 8 2 1 10 10 N 1.34783 * 120.00092 * 59.99974 * 8 2 1 11 11 C 1.46499 * 120.00079 * 179.97438 * 10 8 2 12 12 H 1.08993 * 112.84677 * 23.79834 * 11 10 8 13 13 C 1.53773 * 113.61087 * 154.99969 * 11 10 8 14 14 C 1.53785 * 87.08236 * 140.06316 * 13 11 10 15 15 H 1.09003 * 113.61145 * 89.19559 * 14 13 11 16 16 N 1.46896 * 113.61857 * 220.01476 * 14 13 11 17 17 C 1.46899 * 111.00338 * 203.46654 * 16 14 13 18 18 C 1.50698 * 109.46987 * 179.97438 * 17 16 14 19 19 O 1.21293 * 120.00006 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99538 * 179.97438 * 18 17 16 21 21 C 1.37104 * 119.99773 * 179.72591 * 20 18 17 22 22 H 1.08002 * 119.99671 * 0.27660 * 21 20 18 23 23 C 1.38950 * 120.00030 * 180.27703 * 21 20 18 24 24 N 1.31413 * 119.99930 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99918 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47112 * 89.99702 * 25 23 21 27 27 H 1.48498 * 109.47011 * 209.99970 * 25 23 21 28 28 H 1.48494 * 109.47201 * 329.99943 * 25 23 21 29 29 C 1.53787 * 87.17021 * 334.60998 * 14 13 11 30 30 H 1.08998 * 109.47506 * 299.99855 * 1 2 3 31 31 H 1.08995 * 109.47403 * 60.00609 * 1 2 3 32 32 H 1.09006 * 109.47121 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47019 * 55.00028 * 4 2 1 34 34 H 1.08998 * 109.47071 * 175.00046 * 4 2 1 35 35 H 0.97001 * 120.00283 * 359.97438 * 6 5 4 36 36 H 0.97001 * 119.99842 * 180.02562 * 6 5 4 37 37 H 0.97005 * 119.99476 * 359.97438 * 10 8 2 38 38 H 1.08999 * 113.62023 * 25.51422 * 13 11 10 39 39 H 1.08998 * 113.61541 * 254.60781 * 13 11 10 40 40 H 1.00900 * 110.99693 * 79.51181 * 16 14 13 41 41 H 1.09003 * 109.46477 * 60.00383 * 17 16 14 42 42 H 1.08993 * 109.47002 * 300.00709 * 17 16 14 43 43 H 0.97001 * 120.00485 * 0.02562 * 20 18 17 44 44 H 0.96999 * 119.99993 * 179.97438 * 24 23 21 45 45 H 1.08995 * 113.61428 * 139.94361 * 29 14 13 46 46 H 1.09004 * 113.60823 * 270.84369 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 7 1.9854 -0.3913 3.7001 7 8 1.0117 1.0874 2.3633 8 6 2.0323 -0.7104 -1.2305 9 8 2.7296 -1.6964 -1.1192 10 7 1.7067 -0.2500 -2.4546 11 6 2.1954 -0.9403 -3.6508 12 1 2.4392 -1.9864 -3.4658 13 6 1.3126 -0.7234 -4.8910 14 6 2.6148 -0.6187 -5.7025 15 1 2.9723 -1.5768 -6.0797 16 7 2.5820 0.4248 -6.7359 17 6 3.5501 0.1395 -7.8032 18 6 3.4872 1.2286 -8.8428 19 8 2.7125 2.1520 -8.7076 20 7 4.2927 1.1772 -9.9222 21 6 4.2315 2.1651 -10.8708 22 1 3.5411 2.9869 -10.7509 23 6 5.0578 2.1091 -11.9866 24 7 4.9988 3.0558 -12.8961 25 14 6.2514 0.6873 -12.1944 26 1 5.5869 -0.4120 -12.9394 27 1 7.4434 1.1482 -12.9507 28 1 6.6729 0.1955 -10.8581 29 6 3.3012 -0.1746 -4.4000 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6055 -1.7197 1.2952 34 1 3.1264 -0.7994 1.2055 35 1 2.4894 -1.2152 3.7907 36 1 1.7285 0.1094 4.4901 37 1 1.1487 0.5385 -2.5436 38 1 0.7401 0.2037 -4.8628 39 1 0.7046 -1.5898 -5.1512 40 1 2.7443 1.3362 -6.3346 41 1 3.3095 -0.8179 -8.2655 42 1 4.5541 0.0969 -7.3811 43 1 4.9125 0.4389 -10.0301 44 1 5.5759 3.0169 -13.6748 45 1 4.2961 -0.5985 -4.2642 46 1 3.2732 0.9029 -4.2372 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491042048.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:28 Heat of formation + Delta-G solvation = -128.981853 kcal Electronic energy + Delta-G solvation = -26650.822803 eV Core-core repulsion = 22574.264747 eV Total energy + Delta-G solvation = -4076.558056 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.47202 -40.61801 -40.19349 -39.36590 -36.15257 -35.47666 -35.19061 -34.62643 -33.76983 -33.33758 -28.93416 -28.49099 -26.60997 -26.20309 -25.26979 -23.38268 -21.66819 -21.42731 -21.11671 -20.54182 -20.08538 -18.61263 -18.08424 -17.84655 -17.27168 -17.03401 -16.96703 -16.63203 -16.50167 -16.11050 -15.88849 -15.39597 -15.29394 -14.85145 -14.83068 -14.47995 -14.29931 -14.08854 -14.04354 -13.72114 -13.46357 -13.37035 -13.15977 -12.95984 -12.84893 -12.40850 -12.21592 -12.14494 -12.05746 -11.99827 -11.86521 -11.74211 -11.50740 -11.01159 -10.74783 -10.54941 -10.41452 -10.24311 -10.00860 -9.22466 -8.40952 -6.01954 1.30853 1.36422 1.45142 1.60134 1.65270 1.96451 2.10205 2.23567 2.70869 2.82559 3.15547 3.38978 3.54832 3.64587 3.72296 3.89609 3.94571 4.00620 4.03192 4.17903 4.19678 4.41748 4.48219 4.53025 4.65142 4.67545 4.73154 4.81474 4.83128 4.94733 5.02216 5.07977 5.11648 5.15284 5.33568 5.53106 5.60056 5.92930 5.93922 6.12562 6.40071 6.46563 6.55760 6.60498 6.88531 7.22342 7.37048 7.40414 7.97055 8.76695 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.031941 B = 0.001667 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.413248 B =16788.409083 C =16946.947270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.105 0.895 4 C -0.121 4.121 5 C 0.517 3.483 6 N -0.840 5.840 7 O -0.583 6.583 8 C 0.521 3.479 9 O -0.577 6.577 10 N -0.708 5.708 11 C 0.128 3.872 12 H 0.110 0.890 13 C -0.125 4.125 14 C 0.069 3.931 15 H 0.116 0.884 16 N -0.671 5.671 17 C 0.061 3.939 18 C 0.447 3.553 19 O -0.615 6.615 20 N -0.591 5.591 21 C -0.330 4.330 22 H 0.055 0.945 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.965 3.035 26 H -0.257 1.257 27 H -0.276 1.276 28 H -0.231 1.231 29 C -0.177 4.177 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.417 0.583 36 H 0.407 0.593 37 H 0.413 0.587 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.346 0.654 41 H 0.116 0.884 42 H 0.076 0.924 43 H 0.390 0.610 44 H 0.279 0.721 45 H 0.071 0.929 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.068 -16.027 31.947 35.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.123 0.877 4 C -0.161 4.161 5 C 0.303 3.697 6 N -0.403 5.403 7 O -0.463 6.463 8 C 0.308 3.692 9 O -0.457 6.457 10 N -0.358 5.358 11 C 0.023 3.977 12 H 0.128 0.872 13 C -0.164 4.164 14 C -0.041 4.041 15 H 0.134 0.866 16 N -0.303 5.303 17 C -0.071 4.071 18 C 0.235 3.765 19 O -0.500 6.500 20 N -0.233 5.233 21 C -0.459 4.459 22 H 0.073 0.927 23 C -0.213 4.213 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.181 1.181 27 H -0.201 1.201 28 H -0.154 1.154 29 C -0.217 4.217 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.248 0.752 36 H 0.238 0.762 37 H 0.249 0.751 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.166 0.834 41 H 0.134 0.866 42 H 0.094 0.906 43 H 0.226 0.774 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.947 -15.677 31.314 35.241 hybrid contribution 1.375 0.389 0.001 1.429 sum -2.572 -15.287 31.316 34.943 Atomic orbital electron populations 1.21857 0.91691 1.02626 1.04035 1.20997 0.98718 1.00767 0.90917 0.87729 1.21435 1.04195 1.00225 0.90252 1.20783 0.77869 0.84781 0.86264 1.43764 1.59103 1.29956 1.07525 1.90720 1.41850 1.26385 1.87366 1.20900 0.78979 0.83827 0.85444 1.90673 1.39642 1.27987 1.87397 1.45948 1.52963 1.31941 1.04952 1.22294 0.95193 0.97397 0.82859 0.87238 1.23398 0.96851 1.03448 0.92710 1.22966 0.97070 0.95776 0.88335 0.86626 1.60029 1.52239 1.05835 1.12161 1.21691 0.96484 0.97147 0.91806 1.21055 0.82213 0.89049 0.84149 1.90542 1.41835 1.38849 1.78754 1.42042 1.36977 1.23678 1.20582 1.19021 1.22186 1.03830 1.00911 0.92715 1.26120 0.99775 1.01079 0.94361 1.69807 1.40658 1.35455 1.11591 0.85357 0.77789 0.77811 0.80514 1.18139 1.20085 1.15415 1.24215 0.99361 1.01163 0.97006 0.90745 0.91105 0.92207 0.87091 0.87460 0.75156 0.76155 0.75072 0.89207 0.89671 0.83436 0.86625 0.90619 0.77447 0.91159 0.90979 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.83 71.98 0.64 -1.17 16 2 C -0.09 -1.25 2.37 -11.54 -0.03 -1.27 16 3 H 0.10 1.47 7.95 -2.39 -0.02 1.45 16 4 C -0.12 -1.34 4.52 29.85 0.13 -1.21 16 5 C 0.52 6.52 7.82 87.66 0.69 7.21 16 6 N -0.84 -4.33 8.87 -173.53 -1.54 -5.87 16 7 O -0.58 -12.07 14.80 -3.03 -0.04 -12.11 16 8 C 0.52 8.92 7.15 87.66 0.63 9.55 16 9 O -0.58 -13.51 15.52 -3.02 -0.05 -13.56 16 10 N -0.71 -10.31 5.25 -439.77 -2.31 -12.62 16 11 C 0.13 2.05 4.24 45.57 0.19 2.24 16 12 H 0.11 1.94 7.46 -2.39 -0.02 1.92 16 13 C -0.13 -2.02 7.63 31.12 0.24 -1.79 16 14 C 0.07 1.30 4.16 45.45 0.19 1.49 16 15 H 0.12 1.85 7.88 -2.39 -0.02 1.83 16 16 N -0.67 -18.43 6.24 -492.85 -3.07 -21.51 16 17 C 0.06 1.79 6.02 85.56 0.52 2.30 16 18 C 0.45 19.96 7.82 87.66 0.69 20.64 16 19 O -0.62 -33.92 15.78 -3.07 -0.05 -33.97 16 20 N -0.59 -27.70 5.09 -306.98 -1.56 -29.26 16 21 C -0.33 -19.38 10.16 84.04 0.85 -18.52 16 22 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 23 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 24 N -0.93 -56.42 13.96 21.66 0.30 -56.11 16 25 Si 0.97 38.61 27.74 68.60 1.90 40.52 16 26 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 27 H -0.28 -10.97 7.11 99.48 0.71 -10.27 16 28 H -0.23 -7.72 6.52 99.48 0.65 -7.08 16 29 C -0.18 -3.06 7.52 31.18 0.23 -2.83 16 30 H 0.07 1.17 5.95 -2.39 -0.01 1.15 16 31 H 0.07 0.73 7.56 -2.39 -0.02 0.71 16 32 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.11 1.12 7.95 -2.39 -0.02 1.11 16 35 H 0.42 -0.25 8.83 -92.71 -0.82 -1.07 16 36 H 0.41 1.57 8.93 -92.71 -0.83 0.75 16 37 H 0.41 4.55 8.15 -92.70 -0.76 3.79 16 38 H 0.09 1.54 8.12 -2.39 -0.02 1.52 16 39 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.35 10.27 7.91 -89.69 -0.71 9.57 16 41 H 0.12 2.82 8.13 -2.39 -0.02 2.80 16 42 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.39 15.04 5.76 -92.71 -0.53 14.50 16 44 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 45 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.08 1.54 7.83 -2.39 -0.02 1.53 16 Total: -1.00 -85.02 382.56 -3.63 -88.64 By element: Atomic # 1 Polarization: 42.20 SS G_CDS: -2.64 Total: 39.56 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: 5.43 Total: 16.29 kcal Atomic # 7 Polarization: -117.19 SS G_CDS: -8.18 Total: -125.38 kcal Atomic # 8 Polarization: -59.50 SS G_CDS: -0.14 Total: -59.64 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 1.90 Total: 40.52 kcal Total: -85.02 -3.63 -88.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491042048.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.338 kcal (2) G-P(sol) polarization free energy of solvation -85.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds