Wall clock time and date at job start Fri Apr 10 2020 18:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21283 * 119.99722 * 2 1 4 4 N 1.34771 * 120.00216 * 180.02562 * 2 1 3 5 5 C 1.46506 * 120.00084 * 0.02562 * 4 2 1 6 6 C 1.46496 * 120.00157 * 179.97438 * 4 2 1 7 7 C 1.50695 * 109.47390 * 270.00017 * 6 4 2 8 8 O 1.21283 * 120.00051 * 0.02562 * 7 6 4 9 9 N 1.34780 * 120.00055 * 179.97438 * 7 6 4 10 10 C 1.47417 * 125.64996 * 0.02562 * 9 7 6 11 11 C 1.54906 * 104.83626 * 204.08974 * 10 9 7 12 12 C 1.55160 * 101.58306 * 322.99527 * 11 10 9 13 13 H 1.09000 * 110.71699 * 277.13387 * 12 11 10 14 14 N 1.46896 * 110.71899 * 153.86155 * 12 11 10 15 15 C 1.46899 * 111.00172 * 86.45537 * 14 12 11 16 16 C 1.50696 * 109.47176 * 179.97438 * 15 14 12 17 17 O 1.21287 * 120.00286 * 359.97438 * 16 15 14 18 18 N 1.34783 * 120.00139 * 179.97438 * 16 15 14 19 19 C 1.37097 * 120.00386 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99497 * 0.02562 * 19 18 16 21 21 C 1.38948 * 120.00175 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99826 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99865 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47070 * 60.00169 * 23 21 19 25 25 H 1.48501 * 109.47096 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47132 * 299.99875 * 23 21 19 27 27 C 1.47026 * 125.64424 * 179.71669 * 9 7 6 28 28 H 1.08998 * 109.46869 * 239.99653 * 1 2 3 29 29 H 1.08998 * 109.47103 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47357 * 119.99739 * 1 2 3 31 31 H 1.09001 * 109.47060 * 270.00360 * 5 4 2 32 32 H 1.09004 * 109.47073 * 29.99849 * 5 4 2 33 33 H 1.09000 * 109.47212 * 149.99932 * 5 4 2 34 34 H 1.09001 * 109.47057 * 30.00532 * 6 4 2 35 35 H 1.08999 * 109.47333 * 150.00092 * 6 4 2 36 36 H 1.08999 * 110.36884 * 322.93289 * 10 9 7 37 37 H 1.09004 * 110.36756 * 85.25360 * 10 9 7 38 38 H 1.09004 * 111.00074 * 81.06687 * 11 10 9 39 39 H 1.08995 * 111.00751 * 204.87757 * 11 10 9 40 40 H 1.00907 * 110.99677 * 210.40569 * 14 12 11 41 41 H 1.09002 * 109.46905 * 299.99843 * 15 14 12 42 42 H 1.09000 * 109.47056 * 59.99411 * 15 14 12 43 43 H 0.97003 * 119.99947 * 0.02562 * 18 16 15 44 44 H 0.96996 * 119.99694 * 179.97438 * 22 21 19 45 45 H 1.08994 * 109.88443 * 298.38984 * 27 9 7 46 46 H 1.08998 * 109.88648 * 59.56459 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4484 -2.4359 -0.0017 6 6 3.6459 -1.1671 -0.0011 7 6 4.1477 -1.1668 -1.4220 8 8 3.3593 -1.1661 -2.3436 9 7 5.4727 -1.1662 -1.6688 10 6 6.5367 -1.1664 -0.6484 11 6 7.7689 -0.5544 -1.3602 12 6 7.6250 -1.1391 -2.7902 13 1 8.0388 -2.1463 -2.8384 14 7 8.2699 -0.2629 -3.7772 15 6 9.6985 -0.5789 -3.9079 16 6 10.3245 0.3377 -4.9271 17 8 9.6472 1.1718 -5.4898 18 7 11.6372 0.2306 -5.2136 19 6 12.2067 1.0641 -6.1412 20 1 11.6035 1.8068 -6.6422 21 6 13.5601 0.9541 -6.4361 22 7 14.2941 0.0507 -5.8261 23 14 14.3361 2.0903 -7.6995 24 1 14.1780 3.5000 -7.2606 25 1 15.7804 1.7712 -7.8312 26 1 13.6666 1.9023 -9.0117 27 6 6.0963 -1.1717 -3.0002 28 1 -0.3633 -0.5139 0.8899 29 1 -0.3633 1.0276 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 1.2663 -2.7513 1.0257 32 1 0.4962 -2.3053 -0.5158 33 1 2.0377 -3.1952 -0.5158 34 1 4.0094 -0.2773 0.5129 35 1 4.0094 -2.0572 0.5124 36 1 6.2459 -0.5510 0.2030 37 1 6.7523 -2.1848 -0.3253 38 1 7.7107 0.5340 -1.3754 39 1 8.6955 -0.8873 -0.8927 40 1 7.8038 -0.3199 -4.6704 41 1 10.1904 -0.4420 -2.9449 42 1 9.8137 -1.6136 -4.2308 43 1 12.1789 -0.4367 -4.7639 44 1 15.2387 -0.0264 -6.0323 45 1 5.8134 -2.0764 -3.5383 46 1 5.7822 -0.2911 -3.5604 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491712769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:30 Heat of formation + Delta-G solvation = -89.109544 kcal Electronic energy + Delta-G solvation = -27230.165715 eV Core-core repulsion = 23155.336652 eV Total energy + Delta-G solvation = -4074.829063 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.69864 -39.65067 -38.39269 -37.60678 -35.72857 -34.77940 -33.80441 -31.47121 -31.20178 -30.53716 -29.33160 -28.17903 -26.63825 -25.73383 -23.89251 -23.46339 -20.74753 -20.30378 -19.30610 -19.15303 -17.90927 -17.63391 -17.42046 -16.70071 -16.48313 -16.02977 -15.82121 -15.26574 -15.13691 -14.72655 -14.47687 -14.05805 -13.76843 -13.72316 -13.59932 -13.57230 -13.20127 -13.08816 -13.03672 -12.79607 -12.60109 -12.44453 -12.32249 -12.09822 -11.78434 -11.68811 -11.45893 -11.21614 -11.06423 -10.91516 -10.44314 -10.34403 -10.21950 -10.20109 -9.50831 -9.08840 -8.86867 -8.49725 -8.15641 -7.97242 -6.42453 -3.83272 2.16315 2.40254 2.48633 2.89947 3.20287 3.25903 3.30635 3.89232 4.04338 4.12313 4.21383 4.27992 4.44778 4.57313 4.62541 4.67514 4.84863 4.91997 4.94860 4.98671 5.03195 5.09558 5.10889 5.21256 5.21912 5.29056 5.32383 5.48460 5.59573 5.68292 5.74710 5.78264 5.87778 5.92927 6.03687 6.12856 6.26275 6.91596 7.14433 7.25495 7.54621 7.55660 7.78874 7.94380 8.05175 8.60205 9.17105 9.52951 10.04455 10.75145 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.034782 B = 0.001821 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.816781 B =15369.864227 C =15680.200705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.516 3.484 3 O -0.540 6.540 4 N -0.604 5.604 5 C 0.082 3.918 6 C 0.101 3.899 7 C 0.512 3.488 8 O -0.533 6.533 9 N -0.614 5.614 10 C 0.096 3.904 11 C -0.124 4.124 12 C 0.075 3.925 13 H 0.059 0.941 14 N -0.657 5.657 15 C 0.052 3.948 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.109 3.891 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.353 0.647 41 H 0.087 0.913 42 H 0.045 0.955 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.068 0.932 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.553 -11.099 17.529 29.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.305 3.695 3 O -0.416 6.416 4 N -0.338 5.338 5 C -0.061 4.061 6 C -0.025 4.025 7 C 0.299 3.701 8 O -0.409 6.409 9 N -0.350 5.350 10 C -0.027 4.027 11 C -0.163 4.163 12 C -0.036 4.036 13 H 0.077 0.923 14 N -0.291 5.291 15 C -0.081 4.081 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.015 4.015 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.132 0.868 35 H 0.125 0.875 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.174 0.826 41 H 0.105 0.895 42 H 0.063 0.937 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.915 -9.503 17.081 29.366 hybrid contribution 0.973 -0.923 -0.876 1.602 sum -20.942 -10.426 16.205 28.458 Atomic orbital electron populations 1.21920 0.91278 1.05594 1.04160 1.20875 0.90867 0.82821 0.74914 1.90744 1.70749 1.31043 1.49054 1.47474 1.05121 1.07135 1.74080 1.21830 0.97607 0.84974 1.01658 1.21251 0.81594 1.05596 0.94106 1.20839 0.80655 0.76423 0.92175 1.90709 1.54356 1.49509 1.46285 1.48406 1.04938 1.73382 1.08280 1.22458 0.87484 1.01012 0.91732 1.22885 0.96714 1.02521 0.94156 1.22539 0.92222 0.95038 0.93828 0.92277 1.60149 1.02034 1.53388 1.13479 1.21711 0.89085 0.97169 1.00104 1.19779 0.83296 0.87735 0.86693 1.90537 1.62020 1.38902 1.55158 1.41849 1.07210 1.33377 1.37522 1.19662 0.92597 1.14084 1.16610 0.87957 1.25259 0.96261 0.97705 0.98679 1.69603 1.07842 1.34153 1.42734 0.85910 0.77615 0.80140 0.80517 1.19867 1.20978 1.19924 1.22024 0.91917 1.02687 0.84825 0.89363 0.88919 0.89117 0.92171 0.90514 0.90976 0.86767 0.87460 0.90281 0.91032 0.89049 0.89749 0.82633 0.89460 0.93688 0.77462 0.91826 0.91403 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 8.87 36.01 0.32 -0.72 16 2 C 0.52 5.49 7.78 -10.99 -0.09 5.41 16 3 O -0.54 -8.26 16.66 5.55 0.09 -8.16 16 4 N -0.60 -5.23 2.36 -182.95 -0.43 -5.66 16 5 C 0.08 0.39 10.24 59.85 0.61 1.00 16 6 C 0.10 0.87 4.89 -5.20 -0.03 0.84 16 7 C 0.51 6.29 7.92 -10.99 -0.09 6.20 16 8 O -0.53 -8.66 16.76 5.55 0.09 -8.57 16 9 N -0.61 -6.81 3.33 -170.52 -0.57 -7.38 16 10 C 0.10 0.76 6.69 -2.54 -0.02 0.74 16 11 C -0.12 -1.24 6.71 -24.58 -0.17 -1.40 16 12 C 0.07 0.87 3.23 -65.87 -0.21 0.66 16 13 H 0.06 0.62 7.90 -51.93 -0.41 0.21 16 14 N -0.66 -10.32 5.93 -106.05 -0.63 -10.94 16 15 C 0.05 0.88 6.03 -4.98 -0.03 0.85 16 16 C 0.44 10.29 7.82 -10.98 -0.09 10.20 16 17 O -0.58 -15.89 15.78 5.55 0.09 -15.80 16 18 N -0.56 -14.16 5.29 -10.97 -0.06 -14.22 16 19 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 23 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 C 0.11 1.33 6.41 -3.05 -0.02 1.31 16 28 H 0.09 0.29 8.11 -51.93 -0.42 -0.13 16 29 H 0.09 0.59 8.12 -51.93 -0.42 0.17 16 30 H 0.09 0.45 7.40 -51.93 -0.38 0.07 16 31 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.08 0.29 6.44 -51.93 -0.33 -0.05 16 33 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 34 H 0.11 1.03 7.13 -51.93 -0.37 0.66 16 35 H 0.11 0.52 8.07 -51.93 -0.42 0.10 16 36 H 0.08 0.50 7.48 -51.93 -0.39 0.12 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.35 5.84 8.15 -39.29 -0.32 5.52 16 41 H 0.09 1.34 8.13 -51.93 -0.42 0.92 16 42 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 43 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 44 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.08 1.18 7.97 -51.93 -0.41 0.76 16 LS Contribution 386.93 15.07 5.83 5.83 Total: -1.00 -37.91 386.93 -7.01 -44.92 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -7.09 Total: 10.48 kcal Atomic # 6 Polarization: 17.13 SS G_CDS: -0.04 Total: 17.09 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: -0.96 Total: -61.87 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: 0.27 Total: -32.53 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.91 -7.01 -44.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491712769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.193 kcal (2) G-P(sol) polarization free energy of solvation -37.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds