Wall clock time and date at job start Fri Apr 10 2020 18:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21277 * 120.00327 * 2 1 4 4 N 1.34775 * 119.99896 * 180.02562 * 2 1 3 5 5 C 1.46500 * 120.00185 * 179.97438 * 4 2 1 6 6 C 1.50699 * 109.47373 * 179.97438 * 5 4 2 7 7 O 1.21272 * 120.00205 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99915 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99906 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.46920 * 184.86626 * 9 8 6 11 11 H 1.08998 * 110.45968 * 57.04248 * 10 9 8 12 12 C 1.54370 * 110.41103 * 294.62290 * 10 9 8 13 13 C 1.54270 * 105.06093 * 217.36851 * 12 10 9 14 14 C 1.54383 * 105.05662 * 0.02562 * 13 12 10 15 15 N 1.48558 * 104.59574 * 23.84886 * 14 13 12 16 16 C 1.46901 * 111.00060 * 200.95794 * 15 14 13 17 17 C 1.50694 * 109.47040 * 284.11327 * 16 15 14 18 18 O 1.21294 * 120.00573 * 359.97438 * 17 16 15 19 19 N 1.34784 * 119.99909 * 179.97438 * 17 16 15 20 20 C 1.37097 * 120.00045 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00082 * 0.02562 * 20 19 17 22 22 C 1.38945 * 119.99980 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00211 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99978 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.46980 * 89.99800 * 24 22 20 26 26 H 1.48500 * 109.47371 * 209.99822 * 24 22 20 27 27 H 1.48498 * 109.47414 * 329.99918 * 24 22 20 28 28 H 1.08997 * 109.46869 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46740 * 299.99703 * 1 2 3 30 30 H 1.08994 * 109.47227 * 59.99990 * 1 2 3 31 31 H 0.97000 * 120.00479 * 359.97438 * 4 2 1 32 32 H 1.08999 * 109.47533 * 59.99499 * 5 4 2 33 33 H 1.08997 * 109.47075 * 300.00226 * 5 4 2 34 34 H 0.97005 * 120.00002 * 0.02562 * 8 6 5 35 35 H 1.08997 * 109.46876 * 64.86958 * 9 8 6 36 36 H 1.09000 * 109.46934 * 304.86770 * 9 8 6 37 37 H 1.09001 * 110.32721 * 98.47584 * 12 10 9 38 38 H 1.08993 * 110.33072 * 336.26417 * 12 10 9 39 39 H 1.08996 * 110.32221 * 118.89680 * 13 12 10 40 40 H 1.08999 * 110.32325 * 241.00316 * 13 12 10 41 41 H 1.09001 * 110.40743 * 142.63208 * 14 13 12 42 42 H 1.09001 * 110.40643 * 264.95285 * 14 13 12 43 43 H 1.08996 * 109.46788 * 44.11341 * 16 15 14 44 44 H 1.09000 * 109.46740 * 164.11281 * 16 15 14 45 45 H 0.96995 * 119.99539 * 0.02562 * 19 17 16 46 46 H 0.97001 * 120.00486 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1673 -0.0011 6 6 4.1482 -2.5881 -0.0010 7 8 3.3602 -3.5099 -0.0009 8 7 5.4733 -2.8343 -0.0019 9 6 5.9616 -4.2156 -0.0013 10 6 7.4869 -4.2172 0.1198 11 1 7.7983 -3.6858 1.0190 12 6 8.1269 -3.5791 -1.1317 13 6 9.4005 -4.4081 -1.3976 14 6 9.4223 -5.4778 -0.2846 15 7 8.0034 -5.6102 0.1352 16 6 7.9045 -6.1934 1.4799 17 6 8.1710 -7.6747 1.4058 18 8 8.4186 -8.1938 0.3379 19 7 8.1344 -8.4229 2.5263 20 6 8.3763 -9.7707 2.4589 21 1 8.5968 -10.2328 1.5080 22 6 8.3391 -10.5418 3.6141 23 7 8.5715 -11.8336 3.5496 24 14 7.9586 -9.7423 5.2589 25 1 6.4923 -9.7660 5.4934 26 1 8.6454 -10.4893 6.3431 27 1 8.4353 -8.3360 5.2479 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.6959 -2.0073 -0.0005 32 1 4.0096 -0.6536 0.8888 33 1 4.0089 -0.6532 -0.8911 34 1 6.1036 -2.0970 -0.0024 35 1 5.6704 -4.7043 -0.9310 36 1 5.5296 -4.7533 0.8427 37 1 8.3865 -2.5388 -0.9355 38 1 7.4471 -3.6467 -1.9810 39 1 9.3456 -4.8826 -2.3773 40 1 10.2849 -3.7743 -1.3336 41 1 9.7933 -6.4253 -0.6754 42 1 10.0382 -5.1446 0.5507 43 1 8.6392 -5.7243 2.1342 44 1 6.9036 -6.0237 1.8767 45 1 7.9361 -8.0078 3.3802 46 1 8.5459 -12.3719 4.3561 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493074347.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:37 Heat of formation + Delta-G solvation = -97.304256 kcal Electronic energy + Delta-G solvation = -27297.216534 eV Core-core repulsion = 23222.032122 eV Total energy + Delta-G solvation = -4075.184412 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.59327 -39.72905 -39.13873 -37.82100 -35.22061 -34.73149 -33.95992 -32.19147 -31.58023 -31.18163 -30.11480 -27.49950 -26.97637 -24.87293 -23.94710 -21.47331 -21.02097 -20.69341 -20.43286 -19.35563 -18.32513 -18.14061 -17.06712 -16.48956 -16.47000 -16.11583 -15.86299 -15.61173 -15.31301 -14.86390 -14.79447 -14.56912 -14.18627 -13.98780 -13.55704 -13.47146 -13.25530 -13.04187 -12.98738 -12.80630 -12.54468 -12.41730 -12.29606 -12.02578 -11.81480 -11.34397 -11.26349 -11.06546 -11.01937 -10.60312 -10.58001 -10.41036 -10.35035 -9.97729 -9.65146 -9.55817 -9.39957 -8.70698 -8.20777 -8.15998 -6.30822 -3.82165 2.14484 2.23769 2.38675 3.01453 3.03999 3.06690 3.14650 3.72845 3.88669 4.10095 4.21668 4.38887 4.43854 4.49805 4.76727 4.77458 4.82103 4.90142 4.91671 5.00132 5.04422 5.10763 5.20570 5.30457 5.39003 5.51530 5.53080 5.59894 5.68817 5.74922 5.79917 5.84700 5.88724 5.97924 6.02180 6.11390 6.29250 6.91867 7.00205 7.03396 7.06640 7.58188 7.73899 7.77472 8.14395 8.60413 8.95639 9.42612 9.83685 10.82334 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013138 B = 0.002386 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.746810 B =11732.975528 C =13334.479942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.513 3.487 3 O -0.551 6.551 4 N -0.719 5.719 5 C 0.098 3.902 6 C 0.508 3.492 7 O -0.533 6.533 8 N -0.721 5.721 9 C 0.132 3.868 10 C 0.046 3.954 11 H 0.057 0.943 12 C -0.120 4.120 13 C -0.123 4.123 14 C 0.039 3.961 15 N -0.475 5.475 16 C 0.029 3.971 17 C 0.455 3.545 18 O -0.557 6.557 19 N -0.593 5.593 20 C -0.303 4.303 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.271 1.271 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.414 0.586 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.402 0.598 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.099 0.901 42 H 0.040 0.960 43 H 0.053 0.947 44 H 0.089 0.911 45 H 0.369 0.631 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.428 25.317 -5.112 27.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.301 3.699 3 O -0.429 6.429 4 N -0.375 5.375 5 C -0.029 4.029 6 C 0.293 3.707 7 O -0.410 6.410 8 N -0.373 5.373 9 C 0.009 3.991 10 C -0.063 4.063 11 H 0.075 0.925 12 C -0.158 4.158 13 C -0.161 4.161 14 C -0.089 4.089 15 N -0.199 5.199 16 C -0.103 4.103 17 C 0.240 3.760 18 O -0.438 6.438 19 N -0.232 5.232 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.252 0.748 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.236 0.764 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.117 0.883 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.107 0.893 45 H 0.202 0.798 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.667 24.424 -6.083 26.620 hybrid contribution 0.347 0.811 2.171 2.343 sum -8.320 25.234 -3.912 26.857 Atomic orbital electron populations 1.21834 0.91034 1.04618 1.05460 1.20860 0.90841 0.82964 0.75242 1.90732 1.70772 1.31427 1.49977 1.45894 1.05945 1.10112 1.75567 1.21055 0.82681 0.94270 1.04932 1.20460 0.82798 0.91013 0.76461 1.90744 1.55056 1.45885 1.49284 1.45828 1.06637 1.09717 1.75167 1.21302 0.92712 0.81262 1.03858 1.22853 0.93966 0.91230 0.98234 0.92489 1.22370 0.97585 0.98441 0.97376 1.22291 0.97047 0.96872 0.99906 1.23159 0.88450 1.00489 0.96806 1.64938 1.16494 1.14720 1.23724 1.22147 1.02102 0.95789 0.90217 1.19541 0.84315 0.87251 0.84891 1.90559 1.51793 1.73113 1.28306 1.42205 1.64538 1.09041 1.07458 1.19414 1.45110 0.80732 0.97922 0.86268 1.25033 0.97728 0.95392 0.98059 1.69618 1.48464 1.04682 1.29416 0.86680 0.79294 0.79207 0.84228 1.19595 1.20205 1.19614 0.90258 0.88518 0.88511 0.74785 0.88306 0.88254 0.76356 0.90002 0.90782 0.91435 0.90647 0.90777 0.91492 0.88320 0.94185 0.92890 0.89268 0.79805 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.78 10.39 36.01 0.37 -0.41 16 2 C 0.51 4.31 7.94 -10.99 -0.09 4.23 16 3 O -0.55 -6.76 17.10 5.56 0.10 -6.67 16 4 N -0.72 -5.54 5.53 -61.48 -0.34 -5.88 16 5 C 0.10 0.70 6.15 -5.19 -0.03 0.67 16 6 C 0.51 4.65 7.90 -10.99 -0.09 4.57 16 7 O -0.53 -6.97 15.66 5.56 0.09 -6.89 16 8 N -0.72 -5.56 5.40 -60.29 -0.33 -5.88 16 9 C 0.13 1.41 5.22 -4.04 -0.02 1.39 16 10 C 0.05 0.48 2.37 -66.06 -0.16 0.32 16 11 H 0.06 0.52 8.00 -51.93 -0.42 0.11 16 12 C -0.12 -1.03 6.10 -25.35 -0.15 -1.18 16 13 C -0.12 -1.26 7.00 -25.34 -0.18 -1.44 16 14 C 0.04 0.54 5.95 -2.18 -0.01 0.52 16 15 N -0.47 -7.03 4.63 -223.56 -1.04 -8.07 16 16 C 0.03 0.47 5.27 -4.98 -0.03 0.45 16 17 C 0.45 10.20 7.64 -10.99 -0.08 10.12 16 18 O -0.56 -14.74 14.91 5.55 0.08 -14.66 16 19 N -0.59 -14.05 5.09 -10.97 -0.06 -14.11 16 20 C -0.30 -8.56 10.16 -14.94 -0.15 -8.71 16 21 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -25.79 13.96 55.50 0.77 -25.01 16 24 Si 0.88 19.39 27.74 -169.99 -4.71 14.67 16 25 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.27 -5.41 6.52 56.52 0.37 -5.05 16 28 H 0.08 0.23 7.91 -51.93 -0.41 -0.18 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.41 3.02 7.27 -40.82 -0.30 2.73 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.40 1.90 8.21 -40.82 -0.34 1.57 16 35 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 36 H 0.07 0.92 7.25 -51.93 -0.38 0.55 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.66 7.81 -51.93 -0.41 0.25 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.10 1.68 7.33 -51.93 -0.38 1.30 16 42 H 0.04 0.52 7.74 -51.93 -0.40 0.12 16 43 H 0.05 0.75 7.74 -51.93 -0.40 0.35 16 44 H 0.09 1.29 7.13 -51.93 -0.37 0.92 16 45 H 0.37 7.70 5.76 -40.82 -0.24 7.47 16 46 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 381.28 15.07 5.75 5.75 Total: -1.00 -36.98 381.28 -7.36 -44.35 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -6.96 Total: 10.84 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -0.71 Total: 11.55 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.98 Total: -58.95 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: 0.26 Total: -28.21 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.71 Total: 14.67 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.98 -7.36 -44.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493074347.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.955 kcal (2) G-P(sol) polarization free energy of solvation -36.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds