Wall clock time and date at job start Fri Apr 10 2020 18:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21277 * 120.00327 * 2 1 4 4 N 1.34775 * 119.99896 * 180.02562 * 2 1 3 5 5 C 1.46500 * 120.00185 * 179.97438 * 4 2 1 6 6 C 1.50699 * 109.47373 * 179.97438 * 5 4 2 7 7 O 1.21272 * 120.00205 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99915 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99906 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.46920 * 184.86626 * 9 8 6 11 11 H 1.08998 * 110.45968 * 57.04248 * 10 9 8 12 12 C 1.54370 * 110.41103 * 294.62290 * 10 9 8 13 13 C 1.54270 * 105.06093 * 217.36851 * 12 10 9 14 14 C 1.54383 * 105.05662 * 0.02562 * 13 12 10 15 15 N 1.48558 * 104.59574 * 23.84886 * 14 13 12 16 16 C 1.46901 * 111.00060 * 200.95794 * 15 14 13 17 17 C 1.50694 * 109.47040 * 284.11327 * 16 15 14 18 18 O 1.21294 * 120.00573 * 359.97438 * 17 16 15 19 19 N 1.34784 * 119.99909 * 179.97438 * 17 16 15 20 20 C 1.37097 * 120.00045 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00082 * 0.02562 * 20 19 17 22 22 C 1.38945 * 119.99980 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00211 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99978 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.46980 * 89.99800 * 24 22 20 26 26 H 1.48500 * 109.47371 * 209.99822 * 24 22 20 27 27 H 1.48498 * 109.47414 * 329.99918 * 24 22 20 28 28 H 1.08997 * 109.46869 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46740 * 299.99703 * 1 2 3 30 30 H 1.08994 * 109.47227 * 59.99990 * 1 2 3 31 31 H 0.97000 * 120.00479 * 359.97438 * 4 2 1 32 32 H 1.08999 * 109.47533 * 59.99499 * 5 4 2 33 33 H 1.08997 * 109.47075 * 300.00226 * 5 4 2 34 34 H 0.97005 * 120.00002 * 0.02562 * 8 6 5 35 35 H 1.08997 * 109.46876 * 64.86958 * 9 8 6 36 36 H 1.09000 * 109.46934 * 304.86770 * 9 8 6 37 37 H 1.09001 * 110.32721 * 98.47584 * 12 10 9 38 38 H 1.08993 * 110.33072 * 336.26417 * 12 10 9 39 39 H 1.08996 * 110.32221 * 118.89680 * 13 12 10 40 40 H 1.08999 * 110.32325 * 241.00316 * 13 12 10 41 41 H 1.09001 * 110.40743 * 142.63208 * 14 13 12 42 42 H 1.09001 * 110.40643 * 264.95285 * 14 13 12 43 43 H 1.08996 * 109.46788 * 44.11341 * 16 15 14 44 44 H 1.09000 * 109.46740 * 164.11281 * 16 15 14 45 45 H 0.96995 * 119.99539 * 0.02562 * 19 17 16 46 46 H 0.97001 * 120.00486 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1673 -0.0011 6 6 4.1482 -2.5881 -0.0010 7 8 3.3602 -3.5099 -0.0009 8 7 5.4733 -2.8343 -0.0019 9 6 5.9616 -4.2156 -0.0013 10 6 7.4869 -4.2172 0.1198 11 1 7.7983 -3.6858 1.0190 12 6 8.1269 -3.5791 -1.1317 13 6 9.4005 -4.4081 -1.3976 14 6 9.4223 -5.4778 -0.2846 15 7 8.0034 -5.6102 0.1352 16 6 7.9045 -6.1934 1.4799 17 6 8.1710 -7.6747 1.4058 18 8 8.4186 -8.1938 0.3379 19 7 8.1344 -8.4229 2.5263 20 6 8.3763 -9.7707 2.4589 21 1 8.5968 -10.2328 1.5080 22 6 8.3391 -10.5418 3.6141 23 7 8.5715 -11.8336 3.5496 24 14 7.9586 -9.7423 5.2589 25 1 6.4923 -9.7660 5.4934 26 1 8.6454 -10.4893 6.3431 27 1 8.4353 -8.3360 5.2479 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.6959 -2.0073 -0.0005 32 1 4.0096 -0.6536 0.8888 33 1 4.0089 -0.6532 -0.8911 34 1 6.1036 -2.0970 -0.0024 35 1 5.6704 -4.7043 -0.9310 36 1 5.5296 -4.7533 0.8427 37 1 8.3865 -2.5388 -0.9355 38 1 7.4471 -3.6467 -1.9810 39 1 9.3456 -4.8826 -2.3773 40 1 10.2849 -3.7743 -1.3336 41 1 9.7933 -6.4253 -0.6754 42 1 10.0382 -5.1446 0.5507 43 1 8.6392 -5.7243 2.1342 44 1 6.9036 -6.0237 1.8767 45 1 7.9361 -8.0078 3.3802 46 1 8.5459 -12.3719 4.3561 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493074347.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:37 Heat of formation + Delta-G solvation = -130.690589 kcal Electronic energy + Delta-G solvation = -27298.664274 eV Core-core repulsion = 23222.032122 eV Total energy + Delta-G solvation = -4076.632152 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.34761 -40.76339 -40.12050 -39.31006 -36.13221 -35.85620 -35.44726 -33.80671 -33.14892 -31.81921 -30.79455 -28.48075 -28.12823 -26.05814 -25.37310 -22.39662 -21.65518 -21.58300 -21.26490 -21.19854 -20.20925 -18.81039 -17.79664 -17.67835 -17.25490 -17.09810 -16.99095 -16.66804 -16.44243 -16.04012 -15.94681 -15.77659 -15.24921 -14.99962 -14.73859 -14.58968 -14.33450 -14.21560 -14.09710 -13.87985 -13.58884 -13.30252 -13.10098 -12.98052 -12.95051 -12.88504 -12.43715 -12.28869 -12.15384 -11.99107 -11.85918 -11.51174 -11.36098 -11.18277 -11.06876 -10.44002 -10.31815 -10.24768 -10.13704 -9.40920 -8.41782 -6.02475 1.28112 1.34551 1.42820 1.45020 1.60519 1.71927 1.95732 2.21909 2.40258 2.71850 3.13403 3.24177 3.55318 3.60353 3.75950 3.96607 4.00941 4.11305 4.19837 4.30209 4.31251 4.34333 4.36272 4.40615 4.51604 4.52873 4.68211 4.68980 4.79921 4.97967 5.03454 5.06328 5.07328 5.24995 5.27008 5.29809 5.30876 5.52272 5.86764 5.93154 6.02581 6.41189 6.47138 6.59415 6.88305 7.09906 7.16278 7.39522 7.97455 8.75958 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013138 B = 0.002386 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.746810 B =11732.975528 C =13334.479942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.510 3.490 3 O -0.594 6.594 4 N -0.718 5.718 5 C 0.102 3.898 6 C 0.511 3.489 7 O -0.576 6.576 8 N -0.703 5.703 9 C 0.140 3.860 10 C 0.054 3.946 11 H 0.085 0.915 12 C -0.112 4.112 13 C -0.117 4.117 14 C 0.035 3.965 15 N -0.508 5.508 16 C 0.043 3.957 17 C 0.452 3.548 18 O -0.606 6.606 19 N -0.594 5.594 20 C -0.326 4.326 21 H 0.054 0.946 22 C -0.017 4.017 23 N -0.935 5.935 24 Si 0.965 3.035 25 H -0.259 1.259 26 H -0.274 1.274 27 H -0.231 1.231 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.416 0.584 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.421 0.579 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.093 0.907 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.086 0.914 44 H 0.113 0.887 45 H 0.388 0.612 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.084 29.610 -3.159 31.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.300 3.700 3 O -0.475 6.475 4 N -0.374 5.374 5 C -0.026 4.026 6 C 0.297 3.703 7 O -0.456 6.456 8 N -0.356 5.356 9 C 0.015 3.985 10 C -0.054 4.054 11 H 0.103 0.897 12 C -0.150 4.150 13 C -0.155 4.155 14 C -0.092 4.092 15 N -0.233 5.233 16 C -0.088 4.088 17 C 0.240 3.760 18 O -0.490 6.490 19 N -0.236 5.236 20 C -0.455 4.455 21 H 0.072 0.928 22 C -0.215 4.215 23 N -0.576 5.576 24 Si 0.785 3.215 25 H -0.183 1.183 26 H -0.199 1.199 27 H -0.154 1.154 28 H 0.115 0.885 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.255 0.745 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.259 0.741 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.104 0.896 44 H 0.131 0.869 45 H 0.224 0.776 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.303 28.759 -4.145 30.509 hybrid contribution 0.579 -0.610 1.394 1.628 sum -8.724 28.149 -2.752 29.598 Atomic orbital electron populations 1.21880 0.88248 1.06107 1.06252 1.21484 0.92216 0.82261 0.74082 1.90709 1.71875 1.32761 1.52189 1.45986 1.06343 1.10143 1.74903 1.21120 0.82526 0.92706 1.06208 1.20800 0.82753 0.91356 0.75393 1.90734 1.56205 1.47305 1.51324 1.45585 1.06631 1.09154 1.74239 1.21038 0.93120 0.82440 1.01867 1.22885 0.93255 0.88839 1.00416 0.89675 1.22401 0.96226 1.00037 0.96314 1.22262 0.99234 0.96252 0.97759 1.23097 0.88192 0.99507 0.98449 1.64794 1.17334 1.18041 1.23126 1.22019 1.04244 0.90566 0.92019 1.20883 0.81565 0.90010 0.83587 1.90541 1.53184 1.74971 1.30278 1.42043 1.65261 1.07390 1.08923 1.18977 1.47176 0.83266 0.96096 0.92771 1.26121 0.96556 0.95794 1.03077 1.69805 1.49573 1.06928 1.31278 0.85367 0.79597 0.79947 0.76611 1.18337 1.19936 1.15393 0.88456 0.87674 0.87640 0.74523 0.86939 0.86899 0.74114 0.92474 0.92538 0.87413 0.90969 0.92069 0.88877 0.93072 0.92858 0.89635 0.86929 0.77613 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 10.39 71.24 0.74 -0.45 16 2 C 0.51 7.77 7.94 87.66 0.70 8.46 16 3 O -0.59 -13.85 17.10 -3.02 -0.05 -13.90 16 4 N -0.72 -9.84 5.53 -466.80 -2.58 -12.42 16 5 C 0.10 1.21 6.15 85.63 0.53 1.74 16 6 C 0.51 8.33 7.90 87.66 0.69 9.02 16 7 O -0.58 -14.56 15.66 -3.00 -0.05 -14.61 16 8 N -0.70 -8.75 5.40 -463.06 -2.50 -11.25 16 9 C 0.14 2.71 5.22 86.38 0.45 3.16 16 10 C 0.05 0.95 2.37 45.06 0.11 1.06 16 11 H 0.09 1.09 8.00 -2.39 -0.02 1.07 16 12 C -0.11 -1.50 6.10 31.49 0.19 -1.31 16 13 C -0.12 -2.14 7.00 31.49 0.22 -1.92 16 14 C 0.04 0.95 5.95 86.45 0.51 1.47 16 15 N -0.51 -14.41 4.63 -861.20 -3.99 -18.41 16 16 C 0.04 1.30 5.27 85.55 0.45 1.76 16 17 C 0.45 20.62 7.64 87.65 0.67 21.29 16 18 O -0.61 -34.05 14.91 -3.07 -0.05 -34.10 16 19 N -0.59 -28.32 5.09 -306.98 -1.56 -29.89 16 20 C -0.33 -19.32 10.16 84.04 0.85 -18.47 16 21 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 22 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 23 N -0.94 -56.95 13.96 21.66 0.30 -56.65 16 24 Si 0.96 39.13 27.74 68.60 1.90 41.03 16 25 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 27 H -0.23 -7.80 6.52 99.48 0.65 -7.16 16 28 H 0.10 0.34 7.91 -2.39 -0.02 0.32 16 29 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.42 5.50 7.27 -92.71 -0.67 4.83 16 32 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.42 2.13 8.21 -92.70 -0.76 1.37 16 35 H 0.06 1.41 8.08 -2.39 -0.02 1.39 16 36 H 0.06 1.31 7.25 -2.39 -0.02 1.30 16 37 H 0.11 0.66 8.14 -2.39 -0.02 0.65 16 38 H 0.07 1.05 7.81 -2.39 -0.02 1.03 16 39 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.05 1.85 7.33 -2.39 -0.02 1.83 16 42 H 0.05 1.27 7.74 -2.39 -0.02 1.25 16 43 H 0.09 2.08 7.74 -2.39 -0.02 2.06 16 44 H 0.11 2.91 7.13 -2.39 -0.02 2.90 16 45 H 0.39 15.31 5.76 -92.71 -0.53 14.78 16 46 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -89.60 381.28 -2.99 -92.59 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: -1.00 Total: 32.29 kcal Atomic # 6 Polarization: 18.72 SS G_CDS: 6.58 Total: 25.30 kcal Atomic # 7 Polarization: -118.28 SS G_CDS: -10.33 Total: -128.61 kcal Atomic # 8 Polarization: -62.46 SS G_CDS: -0.14 Total: -62.60 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 1.90 Total: 41.03 kcal Total: -89.60 -2.99 -92.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493074347.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.101 kcal (2) G-P(sol) polarization free energy of solvation -89.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds