Wall clock time and date at job start Fri Apr 10 2020 18:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21279 * 120.00293 * 2 1 4 4 N 1.34782 * 119.99532 * 180.02562 * 2 1 3 5 5 C 1.46503 * 120.00014 * 179.97438 * 4 2 1 6 6 C 1.50697 * 109.47273 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99608 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00086 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00133 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47220 * 180.02562 * 9 8 6 11 11 N 1.46904 * 109.47290 * 179.97438 * 10 9 8 12 12 C 1.46895 * 111.00332 * 189.99380 * 11 10 9 13 13 C 1.50697 * 109.47377 * 162.30919 * 12 11 10 14 14 O 1.21298 * 119.99860 * 1.33611 * 13 12 11 15 15 N 1.34777 * 120.00311 * 181.33105 * 13 12 11 16 16 C 1.37097 * 119.99857 * 180.02562 * 15 13 12 17 17 H 1.07991 * 120.00604 * 0.02562 * 16 15 13 18 18 C 1.38956 * 119.99726 * 179.97438 * 16 15 13 19 19 N 1.31410 * 120.00102 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99903 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46950 * 90.00504 * 20 18 16 22 22 H 1.48496 * 109.47228 * 210.00226 * 20 18 16 23 23 H 1.48501 * 109.47389 * 330.00618 * 20 18 16 24 24 C 1.46901 * 110.99918 * 66.04088 * 11 10 9 25 25 C 1.53001 * 117.49712 * 127.74317 * 24 11 10 26 26 C 1.53001 * 117.49993 * 59.08200 * 24 11 10 27 27 H 1.09005 * 109.46904 * 270.00260 * 1 2 3 28 28 H 1.09003 * 109.46776 * 29.99672 * 1 2 3 29 29 H 1.08994 * 109.47652 * 149.99979 * 1 2 3 30 30 H 0.97001 * 120.00287 * 359.97438 * 4 2 1 31 31 H 1.09001 * 109.46836 * 59.99404 * 5 4 2 32 32 H 1.09006 * 109.46954 * 299.99832 * 5 4 2 33 33 H 0.97000 * 119.99662 * 0.02562 * 8 6 5 34 34 H 1.08996 * 109.47184 * 59.99514 * 9 8 6 35 35 H 1.09006 * 109.47163 * 300.00110 * 9 8 6 36 36 H 1.09003 * 109.46643 * 299.99456 * 10 9 8 37 37 H 1.08996 * 109.47741 * 59.99485 * 10 9 8 38 38 H 1.09000 * 109.47679 * 282.31492 * 12 11 10 39 39 H 1.09009 * 109.46837 * 42.31662 * 12 11 10 40 40 H 0.96994 * 120.00030 * 0.02562 * 15 13 12 41 41 H 0.96994 * 120.00573 * 179.97438 * 19 18 16 42 42 H 1.09004 * 115.55178 * 273.41276 * 24 11 10 43 43 H 1.08999 * 117.49898 * 0.02562 * 25 24 11 44 44 H 1.09005 * 117.49722 * 145.02363 * 25 24 11 45 45 H 1.08998 * 117.49999 * 214.97741 * 26 24 11 46 46 H 1.09000 * 117.49528 * 359.97438 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.6458 -1.1674 -0.0011 6 6 4.1481 -2.5882 -0.0010 7 8 3.3598 -3.5100 0.0000 8 7 5.4731 -2.8346 -0.0019 9 6 5.9614 -4.2158 -0.0024 10 6 7.4913 -4.2159 -0.0029 11 7 7.9809 -5.6010 -0.0027 12 6 9.4298 -5.6472 0.2349 13 6 9.8255 -7.0385 0.6575 14 8 8.9872 -7.9123 0.7281 15 7 11.1108 -7.3120 0.9568 16 6 11.4708 -8.5779 1.3408 17 1 10.7246 -9.3561 1.4029 18 6 12.7960 -8.8600 1.6489 19 7 13.7042 -7.9132 1.5728 20 14 13.2864 -10.5846 2.1727 21 1 13.6555 -11.3799 0.9741 22 1 14.4483 -10.5105 3.0945 23 1 12.1453 -11.2348 2.8660 24 6 7.6309 -6.2832 -1.2557 25 6 8.7597 -6.9754 -2.0223 26 6 8.1529 -5.6769 -2.5599 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 1.6958 -2.0073 -0.0005 31 1 4.0095 -0.6537 0.8888 32 1 4.0088 -0.6534 -0.8912 33 1 6.1034 -2.0973 -0.0024 34 1 5.5973 -4.7296 -0.8921 35 1 5.5986 -4.7297 0.8879 36 1 7.8543 -3.7020 -0.8929 37 1 7.8550 -3.7023 0.8870 38 1 9.9570 -5.3821 -0.6816 39 1 9.6916 -4.9401 1.0222 40 1 11.7811 -6.6132 0.9007 41 1 14.6292 -8.1100 1.7883 42 1 6.6470 -6.7518 -1.2769 43 1 9.7619 -6.9249 -1.5967 44 1 8.5182 -7.8991 -2.5483 45 1 7.5125 -5.7469 -3.4392 46 1 8.7556 -4.7715 -2.4881 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493339222.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:39 Heat of formation + Delta-G solvation = -95.892277 kcal Electronic energy + Delta-G solvation = -27044.021732 eV Core-core repulsion = 22968.898547 eV Total energy + Delta-G solvation = -4075.123184 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.30405 -40.92418 -40.11340 -38.96348 -36.43582 -35.84663 -35.47210 -34.36964 -33.20901 -31.66704 -30.65764 -28.54840 -27.20753 -25.93549 -24.21057 -23.07484 -21.80144 -21.63450 -21.50921 -20.43379 -19.69041 -18.73624 -18.11845 -17.73433 -17.66711 -17.12300 -17.01781 -16.72317 -16.41667 -16.19855 -15.83267 -15.61423 -15.32643 -15.02509 -14.95711 -14.55371 -14.20935 -14.09309 -13.89909 -13.51982 -13.46782 -13.30659 -13.15021 -13.01863 -12.90462 -12.71902 -12.39050 -12.29374 -12.14699 -12.09443 -11.59936 -11.46289 -11.20799 -11.08536 -11.03058 -10.31213 -10.27250 -10.12487 -9.95086 -9.18072 -8.43300 -5.90806 1.38425 1.41961 1.44881 1.53997 1.60616 1.70819 2.12264 2.28781 2.41264 2.83302 2.88974 3.23324 3.40877 3.62186 3.74494 3.94807 3.96956 3.98542 4.04849 4.14363 4.30113 4.32383 4.36285 4.39902 4.51669 4.55002 4.56422 4.68305 4.72794 4.90304 4.96703 4.97765 5.08087 5.15708 5.17764 5.27507 5.31207 5.44210 5.84997 6.07903 6.13663 6.41235 6.47429 6.65872 7.09272 7.16690 7.18396 7.62597 8.19917 8.74158 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.029991 B = 0.001821 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.390911 B =15375.262200 C =15588.394149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.510 3.490 3 O -0.595 6.595 4 N -0.718 5.718 5 C 0.101 3.899 6 C 0.512 3.488 7 O -0.575 6.575 8 N -0.707 5.707 9 C 0.135 3.865 10 C 0.052 3.948 11 N -0.503 5.503 12 C 0.053 3.947 13 C 0.448 3.552 14 O -0.608 6.608 15 N -0.579 5.579 16 C -0.327 4.327 17 H 0.077 0.923 18 C -0.013 4.013 19 N -0.921 5.921 20 Si 0.988 3.012 21 H -0.272 1.272 22 H -0.272 1.272 23 H -0.275 1.275 24 C 0.032 3.968 25 C -0.196 4.196 26 C -0.184 4.184 27 H 0.110 0.890 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.417 0.583 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.420 0.580 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.113 0.887 40 H 0.394 0.606 41 H 0.276 0.724 42 H 0.115 0.885 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.114 0.886 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.871 17.367 -6.490 25.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.299 3.701 3 O -0.476 6.476 4 N -0.374 5.374 5 C -0.026 4.026 6 C 0.298 3.702 7 O -0.455 6.455 8 N -0.360 5.360 9 C 0.010 3.990 10 C -0.076 4.076 11 N -0.226 5.226 12 C -0.078 4.078 13 C 0.235 3.765 14 O -0.492 6.492 15 N -0.218 5.218 16 C -0.457 4.457 17 H 0.095 0.905 18 C -0.212 4.212 19 N -0.563 5.563 20 Si 0.813 3.187 21 H -0.198 1.198 22 H -0.197 1.197 23 H -0.200 1.200 24 C -0.077 4.077 25 C -0.234 4.234 26 C -0.223 4.223 27 H 0.128 0.872 28 H 0.116 0.884 29 H 0.121 0.879 30 H 0.256 0.744 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.258 0.742 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.130 0.870 40 H 0.228 0.772 41 H 0.085 0.915 42 H 0.132 0.868 43 H 0.096 0.904 44 H 0.106 0.894 45 H 0.132 0.868 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -18.578 16.596 -5.990 25.622 hybrid contribution 1.504 -0.632 -0.265 1.652 sum -17.075 15.964 -6.255 24.198 Atomic orbital electron populations 1.21907 0.88092 1.06243 1.06307 1.21522 0.92283 0.82240 0.74070 1.90714 1.71977 1.32841 1.52090 1.45926 1.06242 1.10166 1.75020 1.21109 0.82581 0.92801 1.06098 1.20754 0.82710 0.91326 0.75404 1.90718 1.56111 1.47231 1.51390 1.45620 1.06752 1.09387 1.74198 1.21026 0.93615 0.82288 1.02053 1.22288 0.93790 0.88092 1.03399 1.61310 1.12491 1.15809 1.33033 1.21821 0.89086 0.94617 1.02262 1.20651 0.82263 0.91243 0.82306 1.90514 1.50940 1.49698 1.58070 1.41907 1.07838 1.11281 1.60760 1.19599 0.93847 0.88563 1.43679 0.90548 1.25944 0.95032 1.02999 0.97266 1.69660 1.02819 1.34299 1.49512 0.84992 0.77773 0.77659 0.78306 1.19804 1.19657 1.20006 1.22603 0.98310 1.01620 0.85166 1.23166 0.98217 0.97506 1.04500 1.23515 1.04103 0.96201 0.98513 0.87176 0.88422 0.87903 0.74448 0.87177 0.86962 0.74197 0.91909 0.92555 0.91502 0.88436 0.90848 0.86952 0.77197 0.91481 0.86751 0.90441 0.89433 0.86810 0.87729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 10.30 71.24 0.73 -0.43 16 2 C 0.51 7.85 7.94 87.66 0.70 8.54 16 3 O -0.60 -14.23 17.10 -3.03 -0.05 -14.28 16 4 N -0.72 -9.89 5.53 -466.77 -2.58 -12.47 16 5 C 0.10 1.27 6.15 85.63 0.53 1.80 16 6 C 0.51 8.54 7.90 87.66 0.69 9.23 16 7 O -0.57 -14.25 15.67 -3.05 -0.05 -14.30 16 8 N -0.71 -9.45 5.56 -463.07 -2.57 -12.03 16 9 C 0.13 2.62 5.67 86.38 0.49 3.11 16 10 C 0.05 0.96 4.96 86.30 0.43 1.39 16 11 N -0.50 -14.63 4.34 -875.52 -3.80 -18.43 16 12 C 0.05 1.70 5.00 85.56 0.43 2.13 16 13 C 0.45 20.57 5.84 87.66 0.51 21.08 16 14 O -0.61 -32.89 14.79 -3.08 -0.05 -32.93 16 15 N -0.58 -29.05 5.29 -306.98 -1.62 -30.68 16 16 C -0.33 -18.42 9.68 84.04 0.81 -17.61 16 17 H 0.08 4.62 7.16 -2.92 -0.02 4.60 16 18 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 19 N -0.92 -49.32 13.05 21.66 0.28 -49.04 16 20 Si 0.99 43.05 29.55 68.60 2.03 45.08 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 24 C 0.03 0.92 4.55 44.92 0.20 1.13 16 25 C -0.20 -6.28 8.48 30.62 0.26 -6.02 16 26 C -0.18 -4.12 9.27 30.62 0.28 -3.83 16 27 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 28 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.42 5.35 7.44 -92.71 -0.69 4.66 16 31 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.42 2.72 8.47 -92.71 -0.79 1.93 16 34 H 0.06 1.38 7.30 -2.39 -0.02 1.37 16 35 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.07 0.96 6.87 -2.39 -0.02 0.94 16 37 H 0.10 1.53 7.84 -2.39 -0.02 1.51 16 38 H 0.07 2.10 5.99 -2.39 -0.01 2.08 16 39 H 0.11 3.05 7.77 -2.38 -0.02 3.03 16 40 H 0.39 18.77 7.90 -92.71 -0.73 18.04 16 41 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 42 H 0.11 3.43 8.03 -2.38 -0.02 3.41 16 43 H 0.08 2.89 4.91 -2.39 -0.01 2.87 16 44 H 0.09 2.85 8.14 -2.38 -0.02 2.83 16 45 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.10 2.01 7.15 -2.39 -0.02 2.00 16 Total: -1.00 -78.92 383.73 -3.04 -81.96 By element: Atomic # 1 Polarization: 37.97 SS G_CDS: -1.17 Total: 36.80 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: 6.54 Total: 20.30 kcal Atomic # 7 Polarization: -112.34 SS G_CDS: -10.29 Total: -122.63 kcal Atomic # 8 Polarization: -61.36 SS G_CDS: -0.15 Total: -61.51 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -78.92 -3.04 -81.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493339222.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.934 kcal (2) G-P(sol) polarization free energy of solvation -78.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds