Wall clock time and date at job start Fri Apr 10 2020 18:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46505 * 119.99899 * 2 1 4 4 C 1.52997 * 109.47212 * 270.00188 * 3 2 1 5 5 C 1.52992 * 109.47482 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.47859 * 179.97438 * 5 4 3 7 7 C 1.46890 * 111.00688 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47411 * 180.02562 * 7 6 5 9 9 O 1.21289 * 119.99984 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99976 * 180.02562 * 8 7 6 11 11 C 1.37100 * 119.99915 * 179.97438 * 10 8 7 12 12 H 1.07994 * 120.00141 * 359.97438 * 11 10 8 13 13 C 1.38950 * 119.99846 * 179.97438 * 11 10 8 14 14 N 1.31411 * 120.00223 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 119.99847 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.46916 * 90.00065 * 15 13 11 17 17 H 1.48499 * 109.46659 * 210.00235 * 15 13 11 18 18 H 1.48502 * 109.46778 * 329.99958 * 15 13 11 19 19 C 1.34773 * 120.00646 * 180.02562 * 2 1 3 20 20 O 1.21282 * 120.00692 * 179.97438 * 19 2 1 21 21 C 1.50705 * 119.99759 * 0.02562 * 19 2 1 22 22 H 1.09000 * 110.21146 * 319.29681 * 21 19 2 23 23 C 1.54472 * 110.24837 * 81.22616 * 21 19 2 24 24 C 1.54625 * 101.76426 * 93.58728 * 23 21 19 25 25 C 1.51279 * 104.19760 * 24.79901 * 24 23 21 26 26 O 1.21280 * 124.94191 * 163.72508 * 25 24 23 27 27 N 1.34620 * 110.14737 * 343.77132 * 25 24 23 28 28 H 1.08994 * 109.47405 * 90.00269 * 1 2 3 29 29 H 1.09006 * 109.46911 * 209.99921 * 1 2 3 30 30 H 1.08996 * 109.47170 * 329.99434 * 1 2 3 31 31 H 1.09002 * 109.47068 * 30.00248 * 3 2 1 32 32 H 1.09001 * 109.47372 * 150.00336 * 3 2 1 33 33 H 1.09002 * 109.47153 * 300.00008 * 4 3 2 34 34 H 1.08998 * 109.47533 * 59.99637 * 4 3 2 35 35 H 1.09002 * 109.47103 * 300.00247 * 5 4 3 36 36 H 1.09001 * 109.47066 * 60.00169 * 5 4 3 37 37 H 1.00909 * 110.99304 * 303.95833 * 6 5 4 38 38 H 1.09005 * 109.47135 * 300.00288 * 7 6 5 39 39 H 1.09002 * 109.47335 * 59.99960 * 7 6 5 40 40 H 0.97006 * 120.00554 * 359.97438 * 10 8 7 41 41 H 0.96999 * 119.99793 * 180.02562 * 14 13 11 42 42 H 1.09002 * 110.97121 * 211.70801 * 23 21 19 43 43 H 1.08998 * 110.97194 * 335.46748 * 23 21 19 44 44 H 1.09003 * 110.48975 * 143.47889 * 24 23 21 45 45 H 1.08999 * 110.48866 * 265.98256 * 24 23 21 46 46 H 0.96996 * 124.46950 * 179.54281 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 3.2168 3.0358 -1.4425 6 7 3.4622 3.4597 -2.8275 7 6 4.1963 4.7313 -2.8667 8 6 4.4284 5.1334 -4.3004 9 8 4.0226 4.4296 -5.2010 10 7 5.0879 6.2746 -4.5820 11 6 5.2995 6.6401 -5.8863 12 1 4.9381 6.0134 -6.6881 13 6 5.9789 7.8169 -6.1765 14 7 6.4190 8.5793 -5.2008 15 14 6.2666 8.3153 -7.9537 16 1 5.1303 9.1474 -8.4245 17 1 7.5258 9.0963 -8.0511 18 1 6.3723 7.0983 -8.7982 19 6 2.1389 -1.1671 -0.0005 20 8 3.3517 -1.1671 -0.0010 21 6 1.3855 -2.4723 -0.0017 22 1 0.5254 -2.4112 0.6651 23 6 0.9273 -2.8238 -1.4344 24 6 2.0869 -3.7214 -1.9249 25 6 2.6836 -4.2844 -0.6539 26 8 3.4265 -5.2415 -0.5998 27 7 2.2695 -3.5695 0.4090 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.6083 2.0284 0.5139 32 1 3.1499 1.1385 0.5138 33 1 3.0415 0.9509 -1.9563 34 1 1.5000 1.8408 -1.9563 35 1 2.6273 3.7952 -0.9288 36 1 4.1692 2.9059 -0.9286 37 1 3.9516 2.7437 -3.3433 38 1 3.6138 5.5029 -2.3631 39 1 5.1554 4.6129 -2.3624 40 1 5.4128 6.8374 -3.8618 41 1 6.8930 9.4009 -5.4035 42 1 -0.0130 -3.3750 -1.4191 43 1 0.8420 -1.9269 -2.0478 44 1 1.7070 -4.5245 -2.5564 45 1 2.8252 -3.1292 -2.4657 46 1 2.5218 -3.7546 1.3271 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498520213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:53 Heat of formation + Delta-G solvation = -101.040921 kcal Electronic energy + Delta-G solvation = -26970.613256 eV Core-core repulsion = 22895.266809 eV Total energy + Delta-G solvation = -4075.346446 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.38984 -39.54171 -38.30293 -36.91221 -36.33658 -35.53097 -33.88334 -32.13409 -31.73876 -31.17882 -28.90451 -27.69068 -26.65294 -24.96744 -23.64383 -22.74681 -21.63710 -20.99326 -19.80026 -19.20361 -18.17833 -17.87661 -17.76062 -16.75106 -16.16572 -16.02963 -15.71339 -15.46147 -15.23232 -14.65773 -14.40281 -14.35341 -14.09486 -14.00679 -13.88563 -13.54689 -13.49235 -13.37858 -13.12487 -12.92027 -12.70007 -12.18548 -12.02030 -11.89793 -11.80438 -11.66964 -11.47769 -11.38129 -11.04913 -10.80871 -10.64290 -10.39013 -10.26543 -10.21409 -9.50521 -9.46220 -9.14193 -8.46010 -8.05963 -7.95385 -6.41211 -3.82021 2.06294 2.13116 2.46886 2.94075 3.18373 3.26839 3.32925 3.78743 3.83543 3.91541 3.93305 4.10436 4.17583 4.33308 4.50820 4.61255 4.69751 4.81259 4.90163 5.06929 5.09563 5.11718 5.17587 5.21260 5.25520 5.27645 5.30201 5.37732 5.49215 5.63668 5.80141 5.90114 5.97948 6.04668 6.16831 6.26419 6.28012 6.54240 6.85897 7.22181 7.55740 7.65484 7.67337 7.84056 8.06968 8.61902 9.18398 9.54923 10.06421 10.76548 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021548 B = 0.001798 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.124704 B =15572.988885 C =16189.085069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.612 5.612 3 C 0.116 3.884 4 C -0.131 4.131 5 C 0.062 3.938 6 N -0.669 5.669 7 C 0.050 3.950 8 C 0.441 3.559 9 O -0.584 6.584 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.021 3.979 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.270 1.270 19 C 0.497 3.503 20 O -0.521 6.521 21 C 0.113 3.887 22 H 0.114 0.886 23 C -0.120 4.120 24 C -0.158 4.158 25 C 0.529 3.471 26 O -0.529 6.529 27 N -0.712 5.712 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.028 0.972 37 H 0.349 0.651 38 H 0.086 0.914 39 H 0.043 0.957 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.110 0.890 46 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.996 -18.463 16.008 29.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.346 5.346 3 C -0.007 4.007 4 C -0.170 4.170 5 C -0.068 4.068 6 N -0.302 5.302 7 C -0.082 4.082 8 C 0.226 3.774 9 O -0.468 6.468 10 N -0.201 5.201 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.758 3.242 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 C 0.282 3.718 20 O -0.395 6.395 21 C 0.003 3.997 22 H 0.131 0.869 23 C -0.158 4.158 24 C -0.198 4.198 25 C 0.315 3.685 26 O -0.404 6.404 27 N -0.368 5.368 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.168 0.832 38 H 0.104 0.896 39 H 0.061 0.939 40 H 0.226 0.774 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.126 0.874 45 H 0.128 0.872 46 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -15.740 -18.961 15.224 28.966 hybrid contribution 1.280 0.682 0.362 1.494 sum -14.460 -18.279 15.586 28.038 Atomic orbital electron populations 1.21964 0.79105 1.03461 1.02634 1.47874 1.07216 1.06027 1.73445 1.21532 0.97806 0.83752 0.97598 1.21875 1.01787 0.97089 0.96220 1.21851 0.98409 0.96048 0.90516 1.60081 1.53052 1.05343 1.11714 1.21670 0.96743 0.92998 0.96812 1.19817 0.83978 0.83828 0.89764 1.90518 1.54729 1.53948 1.47587 1.41869 1.49472 1.19946 1.08789 1.19706 1.33532 1.05631 0.83998 0.87922 1.25272 0.96909 0.96054 0.99783 1.69613 1.38557 1.14243 1.31927 0.85848 0.77658 0.78715 0.82008 1.20391 1.20944 1.19419 1.21018 0.88458 0.85468 0.76837 1.90771 1.13640 1.86969 1.48144 1.21632 0.92908 0.85593 0.99563 0.86870 1.22593 0.99076 1.01506 0.92619 1.22369 0.99088 1.01374 0.96972 1.20885 0.79333 0.81741 0.86507 1.90771 1.35882 1.27382 1.86392 1.45949 1.50916 1.29812 1.10124 0.91761 0.90959 0.90414 0.90081 0.89833 0.91600 0.90683 0.91055 0.95423 0.83158 0.89614 0.93867 0.77449 0.91882 0.88358 0.88433 0.87353 0.87216 0.74709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.19 10.16 59.84 0.61 0.79 16 2 N -0.61 -3.96 2.87 -181.57 -0.52 -4.48 16 3 C 0.12 0.91 5.45 -4.04 -0.02 0.89 16 4 C -0.13 -1.31 5.80 -26.74 -0.16 -1.46 16 5 C 0.06 0.74 5.68 -3.83 -0.02 0.71 16 6 N -0.67 -10.90 6.13 -115.06 -0.70 -11.61 16 7 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 8 C 0.44 10.56 7.82 -10.99 -0.09 10.47 16 9 O -0.58 -16.07 15.78 5.55 0.09 -15.98 16 10 N -0.56 -14.46 5.29 -10.97 -0.06 -14.52 16 11 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 12 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -24.68 13.05 55.50 0.72 -23.95 16 15 Si 0.93 21.18 29.55 -169.99 -5.02 16.15 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 C 0.50 4.18 6.85 -10.98 -0.08 4.11 16 20 O -0.52 -6.92 16.15 5.56 0.09 -6.83 16 21 C 0.11 0.58 3.11 -68.16 -0.21 0.37 16 22 H 0.11 0.20 6.39 -51.93 -0.33 -0.13 16 23 C -0.12 -0.46 6.51 -25.10 -0.16 -0.63 16 24 C -0.16 -1.07 6.85 -26.74 -0.18 -1.26 16 25 C 0.53 5.43 8.44 -10.77 -0.09 5.34 16 26 O -0.53 -7.77 18.03 5.56 0.10 -7.67 16 27 N -0.71 -5.42 5.48 -53.83 -0.29 -5.71 16 28 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.07 0.03 5.98 -51.93 -0.31 -0.28 16 30 H 0.08 0.15 7.89 -51.93 -0.41 -0.26 16 31 H 0.08 0.47 7.89 -51.93 -0.41 0.06 16 32 H 0.08 0.80 7.42 -51.93 -0.39 0.42 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.35 6.02 8.43 -39.29 -0.33 5.69 16 38 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 41 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 43 H 0.10 0.35 7.89 -51.93 -0.41 -0.06 16 44 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.41 2.76 8.96 -40.82 -0.37 2.40 16 LS Contribution 387.29 15.07 5.84 5.84 Total: -1.00 -38.04 387.29 -7.45 -45.50 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -7.01 Total: 11.16 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: -0.67 Total: 12.12 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.86 Total: -60.28 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: 0.28 Total: -30.49 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.04 -7.45 -45.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498520213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.546 kcal (2) G-P(sol) polarization free energy of solvation -38.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds