Wall clock time and date at job start Fri Apr 10 2020 18:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99782 * 2 1 4 4 C 1.52998 * 109.47220 * 184.72165 * 3 2 1 5 5 N 1.46900 * 109.47372 * 69.10840 * 4 3 2 6 6 C 1.46903 * 110.99741 * 286.26402 * 5 4 3 7 7 C 1.50701 * 109.47174 * 302.59768 * 6 5 4 8 8 H 1.07999 * 119.99844 * 4.74659 * 7 6 5 9 9 C 1.37878 * 119.99606 * 184.75105 * 7 6 5 10 10 N 1.31508 * 120.00293 * 354.84332 * 9 7 6 11 11 Si 1.86804 * 119.99370 * 174.84872 * 9 7 6 12 12 H 1.48500 * 109.47131 * 94.99564 * 11 9 7 13 13 H 1.48500 * 109.46695 * 214.99051 * 11 9 7 14 14 H 1.48501 * 109.47400 * 334.99165 * 11 9 7 15 15 C 1.38574 * 111.00403 * 162.30847 * 5 4 3 16 16 N 1.31227 * 126.47229 * 359.97438 * 15 5 4 17 17 N 1.28524 * 109.85832 * 180.02562 * 16 15 5 18 18 C 1.30292 * 110.05906 * 359.97438 * 17 16 15 19 19 C 1.50703 * 126.34994 * 180.02562 * 18 17 16 20 20 O 1.42895 * 110.43673 * 125.72697 * 19 18 17 21 21 C 1.54813 * 110.48694 * 3.17866 * 19 18 17 22 22 C 1.55341 * 101.93084 * 220.34187 * 21 19 18 23 23 O 1.44380 * 103.50473 * 37.05358 * 22 21 19 24 24 C 1.43740 * 106.97309 * 319.90809 * 23 22 21 25 25 N 1.36460 * 126.47699 * 180.28496 * 15 5 4 26 26 C 1.46499 * 127.13544 * 0.02562 * 25 15 5 27 27 H 1.08993 * 109.47825 * 64.94014 * 1 2 3 28 28 H 1.09000 * 109.46887 * 184.94108 * 1 2 3 29 29 H 1.09004 * 109.46949 * 304.93122 * 1 2 3 30 30 H 1.09001 * 109.46664 * 64.71697 * 3 2 1 31 31 H 1.09004 * 109.46990 * 304.72382 * 3 2 1 32 32 H 1.09001 * 109.46971 * 309.11104 * 4 3 2 33 33 H 1.09002 * 109.47380 * 189.10703 * 4 3 2 34 34 H 1.09008 * 109.47402 * 62.60048 * 6 5 4 35 35 H 1.09006 * 109.46969 * 182.59724 * 6 5 4 36 36 H 0.97007 * 119.99703 * 179.97438 * 10 9 7 37 37 H 0.96700 * 114.00093 * 59.30156 * 20 19 18 38 38 H 1.09002 * 110.90600 * 338.51219 * 21 19 18 39 39 H 1.09003 * 110.90184 * 102.11431 * 21 19 18 40 40 H 1.09003 * 110.63903 * 278.53263 * 22 21 19 41 41 H 1.09004 * 110.72009 * 155.61633 * 22 21 19 42 42 H 1.08999 * 109.87775 * 267.08547 * 24 23 22 43 43 H 1.09007 * 109.87979 * 145.93862 * 24 23 22 44 44 H 1.08996 * 109.46998 * 270.17005 * 26 25 15 45 45 H 1.09003 * 109.46740 * 30.17056 * 26 25 15 46 46 H 1.08992 * 109.46995 * 150.16978 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5309 1.1868 -0.1187 5 7 3.8809 0.7000 -1.4598 6 6 3.5707 -0.7292 -1.5986 7 6 4.3059 -1.5080 -0.5384 8 1 4.8786 -0.9872 0.2146 9 6 4.2473 -2.8856 -0.5299 10 7 3.4699 -3.5159 -1.3830 11 14 5.2721 -3.8563 0.6935 12 1 4.4504 -4.1674 1.8908 13 1 5.7277 -5.1215 0.0636 14 1 6.4527 -3.0519 1.0988 15 6 5.2136 0.9490 -1.7465 16 7 6.0840 1.5371 -0.9599 17 7 7.2265 1.6029 -1.5450 18 6 7.1536 1.0649 -2.7295 19 6 8.2772 0.9448 -3.7266 20 8 8.4369 -0.4146 -4.1370 21 6 9.5962 1.4877 -3.1247 22 6 10.2118 2.2466 -4.3323 23 8 9.0637 2.8312 -4.9840 24 6 8.0147 1.8492 -4.9464 25 7 5.8673 0.6345 -2.9023 26 6 5.3077 -0.0290 -4.0824 27 1 -0.3634 0.4352 -0.9308 28 1 -0.3633 -1.0239 0.0885 29 1 -0.3633 0.5885 0.8426 30 1 1.7569 1.8159 0.9293 31 1 1.6231 1.8755 -0.8447 32 1 3.9002 0.4860 0.6300 33 1 3.9855 2.1642 0.0430 34 1 2.4975 -0.8811 -1.4825 35 1 3.8819 -1.0745 -2.5846 36 1 3.4290 -4.4851 -1.3773 37 1 7.6491 -0.7966 -4.5475 38 1 9.3950 2.1688 -2.2977 39 1 10.2432 0.6707 -2.8055 40 1 10.7219 1.5539 -5.0018 41 1 10.8965 3.0232 -3.9913 42 1 8.0312 1.2541 -5.8594 43 1 7.0485 2.3429 -4.8408 44 1 5.4212 -1.1082 -3.9806 45 1 4.2497 0.2183 -4.1708 46 1 5.8355 0.3093 -4.9739 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650263495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:59 Heat of formation + Delta-G solvation = -30.361750 kcal Electronic energy + Delta-G solvation = -30026.015543 eV Core-core repulsion = 25953.733976 eV Total energy + Delta-G solvation = -4072.281567 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.51257 -39.74433 -37.97741 -36.48663 -36.21009 -34.32749 -32.62924 -31.69797 -29.95727 -29.14776 -28.25307 -27.35833 -26.35827 -25.55697 -23.45065 -22.97953 -22.30532 -21.68612 -20.30685 -19.71568 -17.82020 -17.05746 -16.65153 -16.21766 -16.00401 -15.94518 -15.60713 -15.39252 -15.23163 -14.93112 -14.44822 -14.23030 -14.07381 -13.64766 -13.43452 -13.11749 -12.83491 -12.75726 -12.54902 -11.95589 -11.82700 -11.66071 -11.43605 -11.40140 -11.20661 -11.17495 -11.06731 -10.89544 -10.76784 -10.63879 -10.41415 -10.06692 -10.00222 -9.90806 -9.69436 -9.57076 -9.09754 -8.91969 -8.43250 -7.42221 -6.12513 -4.16455 2.25671 2.72985 3.25821 3.32789 3.37135 3.41921 3.73022 4.01138 4.05302 4.33769 4.38751 4.44623 4.57413 4.72493 4.81725 5.04911 5.12604 5.22617 5.32082 5.38949 5.44951 5.50893 5.56662 5.62901 5.64283 5.71735 5.75893 5.78413 5.79668 5.89694 5.96924 6.07070 6.13436 6.28240 6.51115 6.62355 6.68353 6.88401 7.16702 7.31163 7.47094 7.50264 7.73418 7.81962 8.06645 8.10910 8.86292 9.34178 9.48820 10.94479 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013398 B = 0.004507 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.397917 B = 6211.691792 C = 7292.571505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.357 6.357 3 C 0.069 3.931 4 C 0.070 3.930 5 N -0.460 5.460 6 C 0.180 3.820 7 C -0.539 4.539 8 H 0.060 0.940 9 C 0.072 3.928 10 N -0.889 5.889 11 Si 0.886 3.114 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.424 3.576 16 N -0.345 5.345 17 N -0.263 5.263 18 C 0.119 3.881 19 C 0.199 3.801 20 O -0.539 6.539 21 C -0.132 4.132 22 C 0.047 3.953 23 O -0.369 6.369 24 C 0.029 3.971 25 N -0.478 5.478 26 C 0.074 3.926 27 H 0.033 0.967 28 H 0.081 0.919 29 H 0.030 0.970 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.031 0.969 36 H 0.261 0.739 37 H 0.377 0.623 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.098 0.902 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.638 8.688 -7.451 11.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C -0.008 4.008 4 C -0.057 4.057 5 N -0.183 5.183 6 C 0.057 3.943 7 C -0.578 4.578 8 H 0.078 0.922 9 C -0.131 4.131 10 N -0.528 5.528 11 Si 0.714 3.286 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.199 1.199 15 C 0.068 3.932 16 N -0.191 5.191 17 N -0.104 5.104 18 C -0.149 4.149 19 C 0.154 3.846 20 O -0.344 6.344 21 C -0.169 4.169 22 C -0.030 4.030 23 O -0.287 6.287 24 C -0.050 4.050 25 N -0.173 5.173 26 C -0.070 4.070 27 H 0.052 0.948 28 H 0.099 0.901 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.226 0.774 38 H 0.130 0.870 39 H 0.115 0.885 40 H 0.083 0.917 41 H 0.117 0.883 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.117 0.883 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.499 9.546 -6.515 12.075 hybrid contribution -0.647 -2.032 -0.117 2.136 sum 2.853 7.514 -6.632 10.420 Atomic orbital electron populations 1.22651 0.82884 1.02214 0.98779 1.88296 1.17927 1.26465 1.94834 1.22498 0.93681 0.85483 0.99148 1.22047 0.93371 1.01241 0.89068 1.59412 1.07816 1.22821 1.28262 1.20356 1.00180 0.76605 0.97158 1.21549 1.30681 0.91868 1.13708 0.92234 1.24795 0.95028 0.97583 0.95663 1.69932 1.37496 1.08575 1.36802 0.86655 0.80861 0.79553 0.81541 1.20505 1.21152 1.19887 1.22821 0.91576 0.95572 0.83261 1.74581 0.95674 1.25813 1.23024 1.73684 1.16429 1.17388 1.02902 1.24489 0.85309 1.06422 0.98669 1.20548 0.91369 0.83113 0.89523 1.86656 1.41303 1.25221 1.81262 1.23176 0.93249 1.01265 0.99260 1.23708 0.89118 0.97539 0.92597 1.88895 1.22207 1.37992 1.79622 1.23938 0.92869 0.91464 0.96686 1.45697 1.09208 1.47425 1.14992 1.22143 1.01310 0.98992 0.84509 0.94831 0.90060 0.95099 0.93304 0.93416 0.90207 0.89580 0.90513 0.95137 0.92892 0.77376 0.86996 0.88479 0.91663 0.88253 0.90860 0.89264 0.89298 0.88330 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.36 -6.88 7.93 -35.23 -0.28 -7.16 16 3 C 0.07 1.16 6.21 37.16 0.23 1.39 16 4 C 0.07 1.37 4.92 -3.82 -0.02 1.35 16 5 N -0.46 -9.56 4.72 -175.87 -0.83 -10.39 16 6 C 0.18 4.26 4.57 -4.97 -0.02 4.23 16 7 C -0.54 -14.45 7.71 -34.44 -0.27 -14.71 16 8 H 0.06 1.70 6.32 -52.49 -0.33 1.37 16 9 C 0.07 1.97 5.45 -17.82 -0.10 1.88 16 10 N -0.89 -24.79 13.29 55.43 0.74 -24.06 16 11 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 15 C 0.42 8.97 6.45 -318.86 -2.06 6.92 16 16 N -0.34 -7.74 10.99 30.32 0.33 -7.41 16 17 N -0.26 -5.53 10.94 32.99 0.36 -5.17 16 18 C 0.12 2.16 6.50 -154.02 -1.00 1.16 16 19 C 0.20 2.85 1.05 -90.24 -0.10 2.75 16 20 O -0.54 -7.55 12.96 -35.23 -0.46 -8.01 16 21 C -0.13 -1.74 6.39 -24.53 -0.16 -1.89 16 22 C 0.05 0.51 7.73 38.40 0.30 0.81 16 23 O -0.37 -4.88 11.52 -35.23 -0.41 -5.29 16 24 C 0.03 0.36 6.22 37.73 0.23 0.59 16 25 N -0.48 -8.70 3.21 -121.46 -0.39 -9.09 16 26 C 0.07 1.03 7.96 59.85 0.48 1.51 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.80 5.87 -51.93 -0.30 1.49 16 33 H 0.09 1.59 7.43 -51.93 -0.39 1.20 16 34 H 0.08 1.94 5.68 -51.92 -0.30 1.65 16 35 H 0.03 0.73 5.25 -51.93 -0.27 0.46 16 36 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.38 4.29 7.10 45.56 0.32 4.61 16 38 H 0.11 1.62 7.04 -51.93 -0.37 1.25 16 39 H 0.10 1.23 8.08 -51.93 -0.42 0.81 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 0.74 7.97 -51.93 -0.41 0.33 16 43 H 0.09 1.13 7.65 -51.92 -0.40 0.73 16 44 H 0.09 1.31 7.69 -51.93 -0.40 0.92 16 45 H 0.10 1.37 7.70 -51.93 -0.40 0.97 16 46 H 0.07 0.73 6.55 -51.93 -0.34 0.39 16 LS Contribution 364.22 15.07 5.49 5.49 Total: -1.00 -33.47 364.22 -7.92 -41.39 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.10 Total: 5.30 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: -1.36 Total: 7.55 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: 0.21 Total: -56.11 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -1.14 Total: -20.45 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.47 -7.92 -41.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650263495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.030 kcal (2) G-P(sol) polarization free energy of solvation -33.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds