Wall clock time and date at job start Fri Apr 10 2020 18:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99782 * 2 1 4 4 C 1.52998 * 109.47220 * 184.72165 * 3 2 1 5 5 N 1.46900 * 109.47372 * 69.10840 * 4 3 2 6 6 C 1.46903 * 110.99741 * 286.26402 * 5 4 3 7 7 C 1.50701 * 109.47174 * 302.59768 * 6 5 4 8 8 H 1.07999 * 119.99844 * 4.74659 * 7 6 5 9 9 C 1.37878 * 119.99606 * 184.75105 * 7 6 5 10 10 N 1.31508 * 120.00293 * 354.84332 * 9 7 6 11 11 Si 1.86804 * 119.99370 * 174.84872 * 9 7 6 12 12 H 1.48500 * 109.47131 * 94.99564 * 11 9 7 13 13 H 1.48500 * 109.46695 * 214.99051 * 11 9 7 14 14 H 1.48501 * 109.47400 * 334.99165 * 11 9 7 15 15 C 1.38574 * 111.00403 * 162.30847 * 5 4 3 16 16 N 1.31227 * 126.47229 * 359.97438 * 15 5 4 17 17 N 1.28524 * 109.85832 * 180.02562 * 16 15 5 18 18 C 1.30292 * 110.05906 * 359.97438 * 17 16 15 19 19 C 1.50703 * 126.34994 * 180.02562 * 18 17 16 20 20 O 1.42895 * 110.43673 * 125.72697 * 19 18 17 21 21 C 1.54813 * 110.48694 * 3.17866 * 19 18 17 22 22 C 1.55341 * 101.93084 * 220.34187 * 21 19 18 23 23 O 1.44380 * 103.50473 * 37.05358 * 22 21 19 24 24 C 1.43740 * 106.97309 * 319.90809 * 23 22 21 25 25 N 1.36460 * 126.47699 * 180.28496 * 15 5 4 26 26 C 1.46499 * 127.13544 * 0.02562 * 25 15 5 27 27 H 1.08993 * 109.47825 * 64.94014 * 1 2 3 28 28 H 1.09000 * 109.46887 * 184.94108 * 1 2 3 29 29 H 1.09004 * 109.46949 * 304.93122 * 1 2 3 30 30 H 1.09001 * 109.46664 * 64.71697 * 3 2 1 31 31 H 1.09004 * 109.46990 * 304.72382 * 3 2 1 32 32 H 1.09001 * 109.46971 * 309.11104 * 4 3 2 33 33 H 1.09002 * 109.47380 * 189.10703 * 4 3 2 34 34 H 1.09008 * 109.47402 * 62.60048 * 6 5 4 35 35 H 1.09006 * 109.46969 * 182.59724 * 6 5 4 36 36 H 0.97007 * 119.99703 * 179.97438 * 10 9 7 37 37 H 0.96700 * 114.00093 * 59.30156 * 20 19 18 38 38 H 1.09002 * 110.90600 * 338.51219 * 21 19 18 39 39 H 1.09003 * 110.90184 * 102.11431 * 21 19 18 40 40 H 1.09003 * 110.63903 * 278.53263 * 22 21 19 41 41 H 1.09004 * 110.72009 * 155.61633 * 22 21 19 42 42 H 1.08999 * 109.87775 * 267.08547 * 24 23 22 43 43 H 1.09007 * 109.87979 * 145.93862 * 24 23 22 44 44 H 1.08996 * 109.46998 * 270.17005 * 26 25 15 45 45 H 1.09003 * 109.46740 * 30.17056 * 26 25 15 46 46 H 1.08992 * 109.46995 * 150.16978 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5309 1.1868 -0.1187 5 7 3.8809 0.7000 -1.4598 6 6 3.5707 -0.7292 -1.5986 7 6 4.3059 -1.5080 -0.5384 8 1 4.8786 -0.9872 0.2146 9 6 4.2473 -2.8856 -0.5299 10 7 3.4699 -3.5159 -1.3830 11 14 5.2721 -3.8563 0.6935 12 1 4.4504 -4.1674 1.8908 13 1 5.7277 -5.1215 0.0636 14 1 6.4527 -3.0519 1.0988 15 6 5.2136 0.9490 -1.7465 16 7 6.0840 1.5371 -0.9599 17 7 7.2265 1.6029 -1.5450 18 6 7.1536 1.0649 -2.7295 19 6 8.2772 0.9448 -3.7266 20 8 8.4369 -0.4146 -4.1370 21 6 9.5962 1.4877 -3.1247 22 6 10.2118 2.2466 -4.3323 23 8 9.0637 2.8312 -4.9840 24 6 8.0147 1.8492 -4.9464 25 7 5.8673 0.6345 -2.9023 26 6 5.3077 -0.0290 -4.0824 27 1 -0.3634 0.4352 -0.9308 28 1 -0.3633 -1.0239 0.0885 29 1 -0.3633 0.5885 0.8426 30 1 1.7569 1.8159 0.9293 31 1 1.6231 1.8755 -0.8447 32 1 3.9002 0.4860 0.6300 33 1 3.9855 2.1642 0.0430 34 1 2.4975 -0.8811 -1.4825 35 1 3.8819 -1.0745 -2.5846 36 1 3.4290 -4.4851 -1.3773 37 1 7.6491 -0.7966 -4.5475 38 1 9.3950 2.1688 -2.2977 39 1 10.2432 0.6707 -2.8055 40 1 10.7219 1.5539 -5.0018 41 1 10.8965 3.0232 -3.9913 42 1 8.0312 1.2541 -5.8594 43 1 7.0485 2.3429 -4.8408 44 1 5.4212 -1.1082 -3.9806 45 1 4.2497 0.2183 -4.1708 46 1 5.8355 0.3093 -4.9739 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650263495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:58 Heat of formation + Delta-G solvation = -55.536866 kcal Electronic energy + Delta-G solvation = -30027.107218 eV Core-core repulsion = 25953.733976 eV Total energy + Delta-G solvation = -4073.373242 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.01589 -40.79823 -39.46894 -37.75871 -37.53607 -35.72645 -34.67872 -32.87398 -31.22454 -30.54556 -29.67404 -28.65821 -27.94682 -26.97031 -24.95806 -24.09934 -23.87746 -23.00169 -21.67176 -21.18615 -19.04802 -18.82246 -18.04646 -17.60735 -17.37972 -17.26298 -16.99415 -16.72097 -16.39925 -16.31982 -16.04336 -15.59297 -15.27818 -15.11938 -14.71876 -14.47689 -14.21083 -13.99905 -13.72393 -13.41341 -13.34476 -13.06759 -12.94255 -12.77304 -12.71242 -12.59070 -12.48714 -12.36953 -12.25076 -12.17368 -12.01913 -11.75276 -11.65066 -11.22470 -11.05583 -10.84652 -10.66973 -10.56635 -10.27819 -9.11519 -8.21494 -6.30112 0.77152 1.27218 1.30363 1.34520 1.40061 1.82196 2.33744 2.75175 2.81363 2.97504 2.99903 3.07046 3.15207 3.36012 3.68780 3.76622 4.04820 4.11510 4.15830 4.22500 4.24316 4.32279 4.45385 4.48000 4.49775 4.50745 4.59119 4.62041 4.67549 4.77830 4.80510 4.86289 4.93815 4.98211 5.07876 5.08526 5.19438 5.43868 5.65735 5.70724 5.73419 5.79925 6.08859 6.33244 6.38849 6.51051 6.78119 7.35706 7.78193 8.83378 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013398 B = 0.004507 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.397917 B = 6211.691792 C = 7292.571505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.399 6.399 3 C 0.075 3.925 4 C 0.072 3.928 5 N -0.449 5.449 6 C 0.199 3.801 7 C -0.541 4.541 8 H 0.035 0.965 9 C 0.034 3.966 10 N -0.908 5.908 11 Si 0.933 3.067 12 H -0.274 1.274 13 H -0.275 1.275 14 H -0.290 1.290 15 C 0.399 3.601 16 N -0.373 5.373 17 N -0.300 5.300 18 C 0.136 3.864 19 C 0.196 3.804 20 O -0.544 6.544 21 C -0.137 4.137 22 C 0.053 3.947 23 O -0.385 6.385 24 C 0.036 3.964 25 N -0.476 5.476 26 C 0.066 3.934 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.028 0.972 36 H 0.265 0.735 37 H 0.389 0.611 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.119 0.881 42 H 0.105 0.895 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.099 0.901 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.972 8.974 -9.155 13.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.318 6.318 3 C -0.002 4.002 4 C -0.055 4.055 5 N -0.172 5.172 6 C 0.074 3.926 7 C -0.580 4.580 8 H 0.053 0.947 9 C -0.167 4.167 10 N -0.547 5.547 11 Si 0.760 3.240 12 H -0.199 1.199 13 H -0.200 1.200 14 H -0.216 1.216 15 C 0.042 3.958 16 N -0.219 5.219 17 N -0.140 5.140 18 C -0.134 4.134 19 C 0.152 3.848 20 O -0.350 6.350 21 C -0.175 4.175 22 C -0.023 4.023 23 O -0.304 6.304 24 C -0.043 4.043 25 N -0.171 5.171 26 C -0.075 4.075 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.046 0.954 36 H 0.074 0.926 37 H 0.239 0.761 38 H 0.112 0.888 39 H 0.117 0.883 40 H 0.103 0.897 41 H 0.137 0.863 42 H 0.123 0.877 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.117 0.883 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.822 9.828 -8.232 13.377 hybrid contribution -0.694 -2.099 0.411 2.249 sum 3.129 7.728 -7.821 11.432 Atomic orbital electron populations 1.22796 0.80692 1.02661 1.00601 1.88214 1.20486 1.27923 1.95198 1.22513 0.91374 0.85076 1.01208 1.22056 0.95694 1.00312 0.87468 1.59424 1.07955 1.20980 1.28865 1.19992 0.98748 0.77986 0.95841 1.21640 1.30346 0.92228 1.13756 0.94717 1.25315 0.95961 0.98357 0.97049 1.69978 1.38227 1.08855 1.37666 0.85937 0.79135 0.78603 0.80303 1.19929 1.19975 1.21602 1.22962 0.91743 0.96682 0.84412 1.74468 0.96457 1.26663 1.24279 1.73625 1.16167 1.19648 1.04550 1.25354 0.86003 1.03716 0.98325 1.20806 0.90372 0.83929 0.89706 1.86650 1.42055 1.25051 1.81281 1.23208 0.93079 1.01292 0.99917 1.23838 0.88600 0.98243 0.91574 1.88881 1.22967 1.38718 1.79793 1.23925 0.92603 0.91133 0.96597 1.45977 1.09063 1.46856 1.15203 1.22432 1.02068 0.98370 0.84642 0.93410 0.90515 0.92635 0.90567 0.91793 0.93887 0.88911 0.91855 0.95365 0.92621 0.76051 0.88834 0.88268 0.89722 0.86256 0.87722 0.89714 0.90069 0.88280 0.86000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.40 -15.30 7.93 -148.98 -1.18 -16.48 16 3 C 0.08 2.46 6.21 71.98 0.45 2.91 16 4 C 0.07 2.88 4.92 86.30 0.42 3.30 16 5 N -0.45 -18.97 4.72 -710.32 -3.35 -22.32 16 6 C 0.20 9.54 4.57 85.56 0.39 9.93 16 7 C -0.54 -29.65 7.71 25.60 0.20 -29.46 16 8 H 0.03 2.06 6.32 -2.91 -0.02 2.04 16 9 C 0.03 1.87 5.45 84.66 0.46 2.33 16 10 N -0.91 -50.63 13.29 21.45 0.29 -50.35 16 11 Si 0.93 45.32 29.54 68.60 2.03 47.35 16 12 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 13 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 14 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 15 C 0.40 17.18 6.45 260.11 1.68 18.86 16 16 N -0.37 -17.23 10.99 -58.00 -0.64 -17.86 16 17 N -0.30 -12.85 10.94 -49.54 -0.54 -13.39 16 18 C 0.14 4.85 6.50 137.64 0.89 5.75 16 19 C 0.20 5.27 1.05 -10.55 -0.01 5.26 16 20 O -0.54 -13.92 12.96 -148.98 -1.93 -15.85 16 21 C -0.14 -3.44 6.39 32.02 0.20 -3.23 16 22 C 0.05 1.01 7.73 72.79 0.56 1.58 16 23 O -0.38 -9.14 11.52 -148.98 -1.72 -10.85 16 24 C 0.04 0.77 6.22 72.35 0.45 1.22 16 25 N -0.48 -17.13 3.21 -538.19 -1.73 -18.85 16 26 C 0.07 1.75 7.96 127.77 1.02 2.77 16 27 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.08 2.18 8.14 -2.39 -0.02 2.17 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.04 2.03 5.87 -2.39 -0.01 2.01 16 33 H 0.09 3.51 7.43 -2.39 -0.02 3.49 16 34 H 0.06 3.26 5.68 -2.38 -0.01 3.25 16 35 H 0.03 1.37 5.25 -2.38 -0.01 1.35 16 36 H 0.26 14.06 8.31 -92.70 -0.77 13.29 16 37 H 0.39 7.75 7.10 -74.06 -0.53 7.22 16 38 H 0.09 2.70 7.04 -2.39 -0.02 2.69 16 39 H 0.10 2.40 8.08 -2.39 -0.02 2.39 16 40 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.12 1.78 8.14 -2.38 -0.02 1.76 16 42 H 0.10 1.65 7.97 -2.39 -0.02 1.63 16 43 H 0.08 1.92 7.65 -2.38 -0.02 1.90 16 44 H 0.08 2.31 7.69 -2.39 -0.02 2.29 16 45 H 0.10 2.64 7.70 -2.39 -0.02 2.62 16 46 H 0.12 2.00 6.55 -2.39 -0.02 1.98 16 Total: -1.00 -73.69 364.22 -0.32 -74.01 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.49 Total: 21.33 kcal Atomic # 6 Polarization: 15.30 SS G_CDS: 7.96 Total: 23.27 kcal Atomic # 7 Polarization: -116.80 SS G_CDS: -5.97 Total: -122.77 kcal Atomic # 8 Polarization: -38.36 SS G_CDS: -4.83 Total: -43.19 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -73.69 -0.32 -74.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650263495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.472 kcal (2) G-P(sol) polarization free energy of solvation -73.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds