Wall clock time and date at job start Fri Apr 10 2020 18:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46499 * 109.47486 * 2 1 4 4 C 1.46503 * 119.99934 * 269.99941 * 3 2 1 5 5 C 1.53000 * 109.47020 * 269.99534 * 4 3 2 6 6 N 1.46903 * 109.46974 * 179.97438 * 5 4 3 7 7 C 1.46901 * 110.99832 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46828 * 179.97438 * 7 6 5 9 9 O 1.21295 * 119.99989 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99586 * 179.97438 * 8 7 6 11 11 C 1.37095 * 119.99935 * 180.02562 * 10 8 7 12 12 H 1.08001 * 119.99754 * 0.02562 * 11 10 8 13 13 C 1.38954 * 120.00395 * 180.02562 * 11 10 8 14 14 N 1.31412 * 119.99553 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00173 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47504 * 359.97438 * 15 13 11 17 17 H 1.48491 * 109.47586 * 120.00084 * 15 13 11 18 18 H 1.48508 * 109.47146 * 240.00217 * 15 13 11 19 19 C 1.34777 * 120.00407 * 89.99365 * 3 2 1 20 20 O 1.21286 * 120.00396 * 180.02562 * 19 3 2 21 21 C 1.50699 * 119.99736 * 0.02562 * 19 3 2 22 22 H 1.09007 * 110.21646 * 318.06402 * 21 19 3 23 23 C 1.54479 * 110.24832 * 80.00060 * 21 19 3 24 24 C 1.54623 * 101.76734 * 144.50516 * 23 21 19 25 25 C 1.51282 * 104.31101 * 335.13584 * 24 23 21 26 26 O 1.21286 * 124.94199 * 196.27917 * 25 24 23 27 27 N 1.34735 * 109.93792 * 16.31290 * 25 24 23 28 28 H 1.09007 * 109.47007 * 60.00526 * 1 2 3 29 29 H 1.08996 * 109.46897 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47238 * 300.00614 * 1 2 3 31 31 H 1.09003 * 109.47503 * 239.99856 * 2 1 3 32 32 H 1.09002 * 109.47402 * 119.99243 * 2 1 3 33 33 H 1.09005 * 109.47203 * 29.99926 * 4 3 2 34 34 H 1.09005 * 109.47031 * 149.99121 * 4 3 2 35 35 H 1.08997 * 109.47222 * 299.99965 * 5 4 3 36 36 H 1.08994 * 109.47088 * 59.99980 * 5 4 3 37 37 H 1.00900 * 110.99985 * 56.04717 * 6 5 4 38 38 H 1.09000 * 109.47000 * 299.99638 * 7 6 5 39 39 H 1.08998 * 109.46849 * 60.00300 * 7 6 5 40 40 H 0.97003 * 120.00065 * 0.02562 * 10 8 7 41 41 H 0.97003 * 119.99356 * 179.97438 * 14 13 11 42 42 H 1.08994 * 110.96846 * 26.37952 * 23 21 19 43 43 H 1.09005 * 110.99674 * 262.63635 * 23 21 19 44 44 H 1.09002 * 110.48860 * 93.88058 * 24 23 21 45 45 H 1.08998 * 110.48497 * 216.38951 * 24 23 21 46 46 H 0.97003 * 124.30171 * 180.40172 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.7076 1.8313 -1.7103 6 7 3.9523 2.5233 -2.9829 7 6 5.3332 2.3148 -3.4384 8 6 5.5460 3.0373 -4.7437 9 8 4.6369 3.6646 -5.2450 10 7 6.7469 2.9872 -5.3536 11 6 6.9407 3.6449 -6.5408 12 1 6.1312 4.2034 -6.9871 13 6 8.1786 3.5929 -7.1699 14 7 9.1636 2.9136 -6.6266 15 14 8.4428 4.4895 -8.7871 16 1 7.1868 5.1753 -9.1840 17 1 9.5254 5.4930 -8.6257 18 1 8.8261 3.5126 -9.8379 19 6 2.2429 2.0166 1.1672 20 8 2.6468 3.1602 1.1672 21 6 1.9921 1.3061 2.4723 22 1 1.0653 0.7348 2.4181 23 6 3.1764 0.3732 2.8093 24 6 3.2446 0.4940 4.3493 25 6 2.6212 1.8399 4.6468 26 8 2.7292 2.4388 5.6960 27 7 1.9291 2.2727 3.5749 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5137 0.8901 33 1 1.5817 1.6877 -2.0285 34 1 2.0955 3.1410 -1.1385 35 1 4.3883 2.2155 -0.9507 36 1 3.8746 0.7622 -1.8406 37 1 3.7420 3.5071 -2.9058 38 1 6.0249 2.7031 -2.6908 39 1 5.5120 1.2489 -3.5802 40 1 7.4740 2.4858 -4.9525 41 1 10.0277 2.8770 -7.0660 42 1 4.0975 0.7303 2.3488 43 1 2.9638 -0.6524 2.5075 44 1 2.6713 -0.3045 4.8204 45 1 4.2802 0.4699 4.6883 46 1 1.4510 3.1159 3.5369 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668382172.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:40:12 Heat of formation + Delta-G solvation = -101.564005 kcal Electronic energy + Delta-G solvation = -27374.141675 eV Core-core repulsion = 23298.772547 eV Total energy + Delta-G solvation = -4075.369129 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.36786 -39.68147 -38.30487 -36.93932 -36.49821 -35.35325 -33.85806 -31.82425 -31.57595 -31.18399 -29.86366 -28.25598 -25.97166 -24.18363 -24.05558 -22.86389 -22.12754 -20.98263 -19.80779 -19.19347 -18.09518 -17.87214 -17.85165 -16.58009 -16.37634 -16.17648 -15.54780 -15.44665 -15.15710 -14.60392 -14.47377 -14.31051 -14.10710 -13.95243 -13.90784 -13.70943 -13.58153 -13.28481 -13.25853 -12.97848 -12.47624 -12.44199 -12.21739 -12.05520 -11.82665 -11.55968 -11.52350 -11.49725 -11.17298 -11.02084 -10.46896 -10.34790 -10.28454 -10.23249 -9.53301 -9.52899 -9.15036 -8.48693 -8.11902 -7.97181 -6.42658 -3.83397 2.06565 2.10242 2.40152 2.95226 3.15937 3.26584 3.33973 3.69573 3.76400 3.89593 3.97420 4.11835 4.24850 4.34600 4.39505 4.48873 4.66161 4.76260 4.85114 4.89908 5.06174 5.09899 5.14252 5.19234 5.25038 5.27444 5.28950 5.33017 5.42101 5.67235 5.68920 5.80305 5.81563 5.95332 6.09768 6.24758 6.27199 6.54830 6.91259 7.13131 7.54777 7.57941 7.67696 7.81743 8.05546 8.60126 9.17053 9.53220 10.04463 10.75184 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021060 B = 0.001977 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.197712 B =14159.505425 C =14777.271097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.096 3.904 3 N -0.604 5.604 4 C 0.116 3.884 5 C 0.046 3.954 6 N -0.666 5.666 7 C 0.053 3.947 8 C 0.441 3.559 9 O -0.583 6.583 10 N -0.564 5.564 11 C -0.298 4.298 12 H 0.104 0.896 13 C 0.021 3.979 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.281 1.281 19 C 0.504 3.496 20 O -0.522 6.522 21 C 0.113 3.887 22 H 0.107 0.893 23 C -0.124 4.124 24 C -0.155 4.155 25 C 0.523 3.477 26 O -0.528 6.528 27 N -0.712 5.712 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.030 0.970 36 H 0.071 0.929 37 H 0.351 0.649 38 H 0.044 0.956 39 H 0.086 0.914 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.875 -12.906 19.479 27.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.027 4.027 3 N -0.338 5.338 4 C -0.006 4.006 5 C -0.085 4.085 6 N -0.299 5.299 7 C -0.080 4.080 8 C 0.226 3.774 9 O -0.467 6.467 10 N -0.200 5.200 11 C -0.428 4.428 12 H 0.122 0.878 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.207 1.207 19 C 0.290 3.710 20 O -0.397 6.397 21 C 0.003 3.997 22 H 0.125 0.875 23 C -0.162 4.162 24 C -0.195 4.195 25 C 0.310 3.690 26 O -0.404 6.404 27 N -0.368 5.368 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.048 0.952 36 H 0.090 0.910 37 H 0.170 0.830 38 H 0.062 0.938 39 H 0.104 0.896 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.109 0.891 43 H 0.121 0.879 44 H 0.128 0.872 45 H 0.126 0.874 46 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -15.207 -12.179 19.250 27.389 hybrid contribution 0.977 0.889 -0.186 1.334 sum -14.230 -11.290 19.064 26.332 Atomic orbital electron populations 1.22248 0.95444 1.02739 1.02863 1.21769 0.94806 0.82058 1.04033 1.47946 1.65406 1.14633 1.05843 1.21462 0.96786 0.98750 0.83617 1.22249 0.95780 0.99758 0.90664 1.60035 1.23779 1.18437 1.27686 1.21656 0.88998 1.01223 0.96147 1.19787 0.83995 0.86276 0.87319 1.90524 1.42337 1.46607 1.67246 1.41868 1.10607 1.46173 1.21391 1.19759 0.97864 1.27553 0.97631 0.87839 1.25275 0.95183 0.97660 0.99916 1.69624 1.03137 1.41524 1.40035 0.85789 0.78505 0.78913 0.81076 1.19202 1.20762 1.20743 1.20703 0.78018 0.86953 0.85316 1.90782 1.44354 1.17551 1.86985 1.21665 1.01444 0.90705 0.85855 0.87544 1.22660 0.97778 1.00026 0.95700 1.22376 1.04300 0.96490 0.96325 1.20904 0.77660 0.87593 0.82882 1.90785 1.60944 1.62505 1.26173 1.46044 1.54033 1.23004 1.13727 0.91673 0.91020 0.92533 0.89230 0.90108 0.89051 0.89688 0.95181 0.91043 0.82958 0.93818 0.89603 0.77458 0.91920 0.89090 0.87924 0.87191 0.87362 0.74435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.60 10.11 37.15 0.38 -0.23 16 2 C 0.10 0.38 5.75 -4.05 -0.02 0.35 16 3 N -0.60 -4.53 2.47 -173.68 -0.43 -4.96 16 4 C 0.12 1.16 5.67 -4.04 -0.02 1.14 16 5 C 0.05 0.55 6.01 -3.82 -0.02 0.53 16 6 N -0.67 -10.57 6.13 -115.06 -0.70 -11.28 16 7 C 0.05 0.93 6.17 -4.97 -0.03 0.89 16 8 C 0.44 10.44 7.82 -10.98 -0.09 10.36 16 9 O -0.58 -15.88 15.78 5.54 0.09 -15.79 16 10 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 11 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 12 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 13 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 14 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 15 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 19 C 0.50 4.59 6.88 -10.99 -0.08 4.52 16 20 O -0.52 -7.21 16.13 5.55 0.09 -7.12 16 21 C 0.11 0.66 2.97 -68.16 -0.20 0.46 16 22 H 0.11 0.34 6.29 -51.92 -0.33 0.01 16 23 C -0.12 -0.50 6.07 -25.10 -0.15 -0.65 16 24 C -0.15 -0.78 6.85 -26.74 -0.18 -0.96 16 25 C 0.52 5.00 8.46 -10.72 -0.09 4.91 16 26 O -0.53 -7.41 18.03 5.55 0.10 -7.31 16 27 N -0.71 -5.88 5.48 -53.80 -0.29 -6.18 16 28 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 29 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.06 0.19 7.16 -51.93 -0.37 -0.18 16 31 H 0.09 0.34 8.07 -51.93 -0.42 -0.08 16 32 H 0.08 0.14 5.09 -51.93 -0.26 -0.13 16 33 H 0.09 0.83 8.07 -51.93 -0.42 0.41 16 34 H 0.08 1.01 7.42 -51.93 -0.39 0.62 16 35 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.35 5.93 8.43 -39.29 -0.33 5.60 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 40 H 0.39 9.52 7.90 -40.82 -0.32 9.19 16 41 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.09 0.49 7.91 -51.93 -0.41 0.08 16 43 H 0.10 0.09 7.00 -51.93 -0.36 -0.27 16 44 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.42 3.59 8.94 -40.82 -0.37 3.23 16 LS Contribution 384.03 15.07 5.79 5.79 Total: -1.00 -36.90 384.03 -7.35 -44.25 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -6.87 Total: 11.50 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: -0.75 Total: 13.29 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.76 Total: -60.66 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: 0.28 Total: -30.22 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.90 -7.35 -44.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668382172.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.316 kcal (2) G-P(sol) polarization free energy of solvation -36.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds