Wall clock time and date at job start Fri Apr 10 2020 18:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47004 * 2 1 4 4 C 1.52998 * 109.47162 * 119.99622 * 2 1 3 5 5 N 1.46900 * 109.47288 * 174.99971 * 4 2 1 6 6 C 1.46900 * 111.00097 * 180.02562 * 5 4 2 7 7 C 1.50705 * 109.46906 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00223 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99460 * 179.97438 * 7 6 5 10 10 C 1.37102 * 119.99634 * 179.97438 * 9 7 6 11 11 H 1.08003 * 120.00085 * 0.02562 * 10 9 7 12 12 C 1.38952 * 119.99850 * 179.97438 * 10 9 7 13 13 N 1.31408 * 120.00125 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99718 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47525 * 59.99879 * 14 12 10 16 16 H 1.48507 * 109.47189 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47404 * 299.99916 * 14 12 10 18 18 N 1.46498 * 109.47097 * 239.99901 * 2 1 3 19 19 C 1.34778 * 120.00167 * 85.00259 * 18 2 1 20 20 O 1.21285 * 119.99811 * 359.97438 * 19 18 2 21 21 C 1.50691 * 120.00249 * 180.02562 * 19 18 2 22 22 C 1.52999 * 110.21606 * 276.92976 * 21 19 18 23 23 C 1.54480 * 110.24857 * 154.99769 * 21 19 18 24 24 C 1.54627 * 101.76536 * 266.32845 * 23 21 19 25 25 C 1.51286 * 104.19454 * 335.20174 * 24 23 21 26 26 O 1.21279 * 124.93933 * 195.99132 * 25 24 23 27 27 N 1.34413 * 110.11622 * 16.25141 * 25 24 23 28 28 H 1.09002 * 109.46992 * 59.99951 * 1 2 3 29 29 H 1.08991 * 109.46933 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46785 * 300.00316 * 1 2 3 31 31 H 1.09002 * 109.47234 * 295.00326 * 4 2 1 32 32 H 1.09003 * 109.46530 * 55.00138 * 4 2 1 33 33 H 1.00898 * 111.00302 * 56.04575 * 5 4 2 34 34 H 1.09004 * 109.46590 * 299.99632 * 6 5 4 35 35 H 1.08996 * 109.47091 * 59.99926 * 6 5 4 36 36 H 0.96997 * 120.00747 * 359.97438 * 9 7 6 37 37 H 0.96993 * 119.99888 * 180.02562 * 13 12 10 38 38 H 0.97003 * 120.00178 * 265.00100 * 18 2 1 39 39 H 1.09005 * 109.46782 * 298.06365 * 22 21 19 40 40 H 1.09003 * 109.47542 * 58.06729 * 22 21 19 41 41 H 1.09000 * 109.47356 * 178.06977 * 22 21 19 42 42 H 1.09003 * 110.97169 * 148.21159 * 23 21 19 43 43 H 1.08999 * 110.97225 * 24.44774 * 23 21 19 44 44 H 1.09004 * 110.48832 * 216.52571 * 24 23 21 45 45 H 1.08997 * 110.48725 * 93.87473 * 24 23 21 46 46 H 0.96999 * 124.35074 * 180.40767 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5041 -0.8266 1.1905 6 6 4.0303 -1.5158 2.3763 7 6 5.5317 -1.6042 2.2808 8 8 6.1067 -1.1394 1.3194 9 7 6.2354 -2.1999 3.2639 10 6 7.6013 -2.2808 3.1768 11 1 8.1133 -1.8669 2.3207 12 6 8.3269 -2.8945 4.1906 13 7 7.7040 -3.3977 5.2325 14 14 10.1879 -3.0041 4.0723 15 1 10.7607 -1.6360 3.9987 16 1 10.7200 -3.7002 5.2713 17 1 10.5625 -3.7638 2.8525 18 7 2.0183 -0.6906 -1.1961 19 6 2.1471 -0.0183 -2.3571 20 8 1.8583 1.1584 -2.4117 21 6 2.6489 -0.7288 -3.5877 22 6 4.1779 -0.7814 -3.5813 23 6 2.1439 -0.0144 -4.8608 24 6 0.8531 -0.8055 -5.1753 25 6 1.0806 -2.1567 -4.5340 26 8 0.4383 -3.1569 -4.7750 27 7 2.0943 -2.0861 -3.6543 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.7516 -0.1582 2.1370 32 1 1.6054 -1.7197 1.2951 33 1 3.9281 0.0826 1.0824 34 1 3.7557 -0.9585 3.2720 35 1 3.6095 -2.5198 2.4296 36 1 5.7757 -2.5713 4.0330 37 1 8.2105 -3.8257 5.9403 38 1 2.2490 -1.6318 -1.1526 39 1 4.5764 0.2330 -3.6026 40 1 4.5204 -1.2874 -2.6786 41 1 4.5264 -1.3271 -4.4581 42 1 2.8656 -0.1069 -5.6724 43 1 1.9198 1.0328 -4.6577 44 1 0.7234 -0.9115 -6.2524 45 1 -0.0131 -0.3141 -4.7323 46 1 2.4179 -2.8357 -3.1306 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669657833.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:40:19 Heat of formation + Delta-G solvation = -112.833503 kcal Electronic energy + Delta-G solvation = -28163.533452 eV Core-core repulsion = 24087.675641 eV Total energy + Delta-G solvation = -4075.857811 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.35678 -39.37014 -38.37417 -37.12262 -36.37243 -34.40329 -33.73855 -31.89616 -31.35446 -31.25775 -30.46986 -27.67040 -25.36728 -25.05189 -23.75002 -23.07967 -21.23561 -20.92660 -20.17676 -19.31264 -18.40539 -17.93480 -17.03952 -16.76258 -16.06498 -15.71172 -15.34031 -15.03736 -14.80064 -14.62609 -14.45369 -14.17067 -14.06921 -13.98313 -13.67414 -13.53047 -13.30802 -12.90257 -12.79872 -12.64695 -12.51033 -12.46301 -12.07641 -11.86826 -11.61574 -11.54502 -11.48508 -11.33183 -11.06564 -11.02208 -10.56223 -10.48601 -10.26651 -10.14983 -9.55396 -9.28662 -9.17991 -8.55815 -8.18923 -8.02125 -6.47008 -3.88158 2.27554 2.33893 2.95763 3.03807 3.16013 3.22397 3.26343 3.84148 3.91890 3.97949 4.14814 4.22040 4.37558 4.57116 4.70013 4.74240 4.96764 4.98597 5.03911 5.16767 5.22006 5.29084 5.37717 5.41218 5.45185 5.49019 5.51421 5.57302 5.68990 5.71049 5.81031 5.88128 5.89854 5.97532 6.18460 6.33193 6.41935 6.66103 7.05065 7.38319 7.49699 7.50598 7.92150 8.00110 8.04903 8.55032 9.12148 9.48199 9.99145 10.70575 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016213 B = 0.002555 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.633346 B =10957.802219 C =11732.528461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.088 0.912 4 C 0.047 3.953 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.584 6.584 9 N -0.562 5.562 10 C -0.301 4.301 11 H 0.102 0.898 12 C 0.023 3.977 13 N -0.901 5.901 14 Si 0.931 3.069 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.273 1.273 18 N -0.697 5.697 19 C 0.516 3.484 20 O -0.539 6.539 21 C 0.143 3.857 22 C -0.154 4.154 23 C -0.116 4.116 24 C -0.158 4.158 25 C 0.523 3.477 26 O -0.532 6.532 27 N -0.720 5.720 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.351 0.649 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.392 0.608 37 H 0.273 0.727 38 H 0.404 0.596 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.109 0.891 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.194 5.533 -13.383 20.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.106 0.894 4 C -0.083 4.083 5 N -0.299 5.299 6 C -0.083 4.083 7 C 0.225 3.775 8 O -0.468 6.468 9 N -0.199 5.199 10 C -0.431 4.431 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.199 1.199 18 N -0.347 5.347 19 C 0.300 3.700 20 O -0.416 6.416 21 C 0.052 3.948 22 C -0.212 4.212 23 C -0.154 4.154 24 C -0.199 4.199 25 C 0.310 3.690 26 O -0.408 6.408 27 N -0.378 5.378 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.170 0.830 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.225 0.775 37 H 0.082 0.918 38 H 0.239 0.761 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.111 0.889 43 H 0.128 0.872 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -14.323 5.590 -14.443 21.094 hybrid contribution 0.876 -0.501 1.714 1.989 sum -13.446 5.089 -12.729 19.202 Atomic orbital electron populations 1.22132 0.94872 1.02314 1.02653 1.20994 0.93681 0.97515 0.83926 0.89375 1.22321 0.89597 1.00749 0.95664 1.60065 1.02961 1.26853 1.40046 1.21684 0.95381 0.99842 0.91358 1.19771 0.87948 0.84696 0.85082 1.90518 1.71096 1.51947 1.33234 1.41862 1.07418 1.50827 1.19781 1.19647 0.81489 1.35361 1.06555 0.87972 1.25266 1.00736 0.96677 0.95190 1.69597 1.36866 1.38450 1.09346 0.85918 0.82059 0.78619 0.77634 1.19888 1.20948 1.19852 1.45786 1.65745 1.14349 1.08842 1.20588 0.77389 0.87295 0.84720 1.90692 1.50240 1.15661 1.84989 1.21242 0.96525 0.82354 0.94660 1.22086 0.90298 1.04448 1.04334 1.22678 0.96420 1.01447 0.94827 1.22406 1.00118 0.93961 1.03369 1.20913 0.78793 0.90390 0.78915 1.90771 1.49704 1.36011 1.64291 1.46373 1.36087 1.11262 1.44110 0.91932 0.92310 0.91473 0.93746 0.90453 0.82974 0.93809 0.89607 0.77470 0.91760 0.76057 0.89989 0.90312 0.90599 0.88920 0.87227 0.87636 0.87693 0.74714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.48 37.16 0.35 -1.06 16 2 C 0.14 1.46 2.81 -67.93 -0.19 1.27 16 3 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 4 C 0.05 0.48 5.24 -3.82 -0.02 0.46 16 5 N -0.67 -9.37 5.85 -115.05 -0.67 -10.05 16 6 C 0.05 0.80 6.17 -4.97 -0.03 0.77 16 7 C 0.44 9.83 7.82 -10.98 -0.09 9.74 16 8 O -0.58 -15.03 15.78 5.55 0.09 -14.94 16 9 N -0.56 -13.76 5.29 -10.96 -0.06 -13.82 16 10 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 11 H 0.10 2.91 7.16 -52.48 -0.38 2.54 16 12 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.07 13.05 55.50 0.72 -23.34 16 14 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 15 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 18 N -0.70 -7.16 4.71 -53.81 -0.25 -7.41 16 19 C 0.52 5.72 6.72 -10.99 -0.07 5.64 16 20 O -0.54 -7.40 15.30 5.55 0.08 -7.32 16 21 C 0.14 1.24 1.11 -132.05 -0.15 1.10 16 22 C -0.15 -1.30 8.79 37.16 0.33 -0.98 16 23 C -0.12 -0.85 6.14 -25.10 -0.15 -1.00 16 24 C -0.16 -1.23 6.85 -26.74 -0.18 -1.41 16 25 C 0.52 5.56 8.43 -10.86 -0.09 5.47 16 26 O -0.53 -7.79 18.03 5.56 0.10 -7.69 16 27 N -0.72 -6.30 4.98 -47.68 -0.24 -6.54 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.35 5.42 8.43 -39.29 -0.33 5.09 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.39 9.19 7.90 -40.82 -0.32 8.86 16 37 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.40 3.91 8.00 -40.82 -0.33 3.59 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.52 7.91 -51.93 -0.41 0.11 16 43 H 0.11 0.88 6.88 -51.93 -0.36 0.53 16 44 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.41 3.30 8.80 -40.82 -0.36 2.94 16 LS Contribution 387.27 15.07 5.84 5.84 Total: -1.00 -33.47 387.27 -7.04 -40.50 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -7.08 Total: 16.96 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: -0.54 Total: 12.19 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -0.50 Total: -61.16 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: 0.27 Total: -29.96 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.47 -7.04 -40.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669657833.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.329 kcal (2) G-P(sol) polarization free energy of solvation -33.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds