Wall clock time and date at job start Fri Apr 10 2020 18:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.54980 * 2 1 4 4 C 1.54997 * 110.61472 * 236.95273 * 2 1 3 5 5 C 1.54810 * 102.09240 * 204.47323 * 4 2 1 6 6 C 1.54101 * 104.18639 * 20.88217 * 5 4 2 7 7 H 1.08997 * 110.00815 * 242.53493 * 6 5 4 8 8 C 1.50705 * 109.88158 * 121.45037 * 6 5 4 9 9 O 1.21277 * 120.00158 * 245.71604 * 8 6 5 10 10 N 1.34783 * 119.99577 * 65.71459 * 8 6 5 11 11 C 1.46500 * 119.99986 * 0.02562 * 10 8 6 12 12 C 1.50696 * 109.47584 * 89.99781 * 11 10 8 13 13 H 1.08005 * 120.00089 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00499 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00031 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00200 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47036 * 90.00304 * 16 14 12 18 18 H 1.48508 * 109.47059 * 209.99801 * 16 14 12 19 19 H 1.48495 * 109.47079 * 330.00027 * 16 14 12 20 20 C 1.46497 * 119.99868 * 180.02562 * 10 8 6 21 21 C 1.52998 * 109.47137 * 90.00252 * 20 10 8 22 22 N 1.46896 * 109.47093 * 180.02562 * 21 20 10 23 23 C 1.47010 * 111.00145 * 293.63098 * 22 21 20 24 24 C 1.53097 * 109.26224 * 177.60860 * 23 22 21 25 25 O 1.43017 * 109.25512 * 56.85034 * 24 23 22 26 26 C 1.43007 * 113.73805 * 301.32813 * 25 24 23 27 27 C 1.47013 * 110.99970 * 169.99822 * 22 21 20 28 28 O 1.43749 * 107.29638 * 2.02989 * 6 5 4 29 29 H 1.09001 * 109.47002 * 298.56958 * 1 2 3 30 30 H 1.08993 * 109.46955 * 58.57395 * 1 2 3 31 31 H 1.09000 * 109.47050 * 178.57224 * 1 2 3 32 32 H 1.09006 * 110.90676 * 322.67101 * 4 2 1 33 33 H 1.09002 * 110.91071 * 86.27894 * 4 2 1 34 34 H 1.08990 * 110.49098 * 262.20706 * 5 4 2 35 35 H 1.08996 * 110.48835 * 139.55493 * 5 4 2 36 36 H 1.09004 * 109.47002 * 210.00014 * 11 10 8 37 37 H 1.09005 * 109.47045 * 329.99564 * 11 10 8 38 38 H 0.96995 * 120.00291 * 180.02562 * 15 14 12 39 39 H 1.08996 * 109.47001 * 210.00081 * 20 10 8 40 40 H 1.09003 * 109.47077 * 330.00295 * 20 10 8 41 41 H 1.09006 * 109.46954 * 299.99682 * 21 20 10 42 42 H 1.08997 * 109.47306 * 59.99659 * 21 20 10 43 43 H 1.09002 * 109.51101 * 297.54821 * 23 22 21 44 44 H 1.09001 * 109.50617 * 57.67362 * 23 22 21 45 45 H 1.08997 * 109.50806 * 296.91728 * 24 23 22 46 46 H 1.08998 * 109.50455 * 176.78225 * 24 23 22 47 47 H 1.08997 * 109.51046 * 298.73652 * 26 25 24 48 48 H 1.09001 * 109.54195 * 178.62823 * 26 25 24 49 49 H 1.08999 * 109.51046 * 302.32953 * 27 22 21 50 50 H 1.09003 * 109.50749 * 62.45596 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0758 -0.7911 -1.2160 5 6 3.4795 -1.2178 -0.7219 6 6 3.3840 -1.1243 0.8133 7 1 4.0856 -0.3779 1.1859 8 6 3.6889 -2.4659 1.4284 9 8 2.8234 -3.0697 2.0261 10 7 4.9234 -2.9946 1.3143 11 6 5.9689 -2.2649 0.5927 12 6 6.7136 -1.3737 1.5530 13 1 6.4357 -1.3526 2.5965 14 6 7.7498 -0.5853 1.0997 15 7 8.0881 -0.6106 -0.1710 16 14 8.6725 0.5199 2.2899 17 1 9.8206 -0.2240 2.8675 18 1 9.1717 1.7176 1.5677 19 1 7.7587 0.9447 3.3806 20 6 5.2196 -4.2990 1.9117 21 6 4.9307 -5.4038 0.8935 22 7 5.2272 -6.7118 1.4928 23 6 6.6662 -6.8563 1.7568 24 6 6.9224 -8.2053 2.4340 25 8 6.4164 -9.2537 1.6033 26 6 5.0176 -9.1445 1.3264 27 6 4.7421 -7.8051 0.6380 28 8 2.0385 -0.7337 1.1348 29 1 -0.3633 0.4915 0.9025 30 1 -0.3633 0.5358 -0.8769 31 1 -0.3633 -1.0274 -0.0256 32 1 1.4549 -1.6627 -1.4234 33 1 2.1509 -0.1507 -2.0949 34 1 4.2406 -0.5349 -1.0990 35 1 3.6974 -2.2406 -1.0289 36 1 6.6631 -2.9749 0.1430 37 1 5.5140 -1.6567 -0.1891 38 1 8.8173 -0.0562 -0.4899 39 1 6.2701 -4.3364 2.2001 40 1 4.5954 -4.4451 2.7933 41 1 3.8802 -5.3664 0.6051 42 1 5.5549 -5.2577 0.0119 43 1 7.2152 -6.8111 0.8163 44 1 6.9987 -6.0512 2.4120 45 1 6.4169 -8.2298 3.3994 46 1 7.9939 -8.3415 2.5799 47 1 4.4567 -9.1963 2.2595 48 1 4.7108 -9.9602 0.6716 49 1 3.6700 -7.6925 0.4764 50 1 5.2603 -7.7751 -0.3205 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151227987.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:40 Heat of formation + Delta-G solvation = -119.546019 kcal Electronic energy + Delta-G solvation = -29540.100103 eV Core-core repulsion = 25567.491559 eV Total energy + Delta-G solvation = -3972.608544 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.01656 -39.49610 -38.07386 -36.05920 -34.86109 -32.67327 -32.00567 -31.65147 -31.20467 -29.68598 -27.29781 -26.87175 -25.30929 -24.03472 -23.21733 -22.27091 -21.42364 -20.98366 -20.32291 -18.53058 -16.98827 -16.59125 -16.41216 -16.15656 -15.95638 -15.84844 -15.15425 -15.04676 -14.91190 -14.57283 -14.38894 -14.20298 -13.82918 -13.54525 -13.32604 -13.11260 -12.68205 -12.41261 -12.30432 -12.18301 -12.13668 -11.98137 -11.69400 -11.48317 -11.40257 -11.26518 -11.09573 -10.95581 -10.87735 -10.71800 -10.56257 -10.55000 -10.39693 -10.16210 -9.83048 -9.67632 -9.61188 -8.78789 -8.59910 -8.35645 -7.78225 -6.25690 -4.33156 3.18434 3.25869 3.27380 3.33995 3.43021 3.78888 3.98279 4.25487 4.41238 4.82358 4.84070 4.91409 4.99000 5.01293 5.07680 5.11375 5.16966 5.24793 5.27556 5.37719 5.44784 5.51874 5.54972 5.57101 5.63046 5.66197 5.74235 5.75216 5.81717 5.93669 5.94296 5.95948 5.99447 6.13800 6.21769 6.24837 6.29681 6.36692 6.42979 6.64581 6.97968 7.03064 7.07642 7.09838 7.19538 7.50519 7.69603 7.97914 8.25675 8.72932 8.98381 9.35453 10.80745 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.008347 B = 0.004434 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3353.766539 B = 6313.212197 C = 8946.429188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.068 3.932 3 H 0.070 0.930 4 C -0.150 4.150 5 C -0.138 4.138 6 C 0.067 3.933 7 H 0.107 0.893 8 C 0.519 3.481 9 O -0.553 6.553 10 N -0.594 5.594 11 C 0.227 3.773 12 C -0.540 4.540 13 H 0.062 0.938 14 C 0.067 3.933 15 N -0.891 5.891 16 Si 0.895 3.105 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.128 3.872 21 C 0.045 3.955 22 N -0.533 5.533 23 C 0.012 3.988 24 C 0.065 3.935 25 O -0.389 6.389 26 C 0.065 3.935 27 C 0.018 3.982 28 O -0.351 6.351 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.034 0.966 37 H 0.049 0.951 38 H 0.266 0.734 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.038 0.962 43 H 0.044 0.956 44 H 0.093 0.907 45 H 0.059 0.941 46 H 0.097 0.903 47 H 0.059 0.941 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.940 -7.270 -2.522 10.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.010 3.990 3 H 0.088 0.912 4 C -0.187 4.187 5 C -0.176 4.176 6 C 0.006 3.994 7 H 0.124 0.876 8 C 0.306 3.694 9 O -0.431 6.431 10 N -0.327 5.327 11 C 0.108 3.892 12 C -0.579 4.579 13 H 0.080 0.920 14 C -0.136 4.136 15 N -0.529 5.529 16 Si 0.723 3.277 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.197 1.197 20 C 0.004 3.996 21 C -0.084 4.084 22 N -0.259 5.259 23 C -0.116 4.116 24 C -0.012 4.012 25 O -0.308 6.308 26 C -0.012 4.012 27 C -0.110 4.110 28 O -0.270 6.270 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.111 0.889 45 H 0.078 0.922 46 H 0.115 0.885 47 H 0.077 0.923 48 H 0.113 0.887 49 H 0.103 0.897 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.498 -7.719 -1.776 10.907 hybrid contribution 1.239 1.103 -0.386 1.703 sum -6.259 -6.617 -2.162 9.361 Atomic orbital electron populations 1.21744 0.93456 1.02799 1.02033 1.23137 0.94973 0.95436 0.85418 0.91207 1.23209 0.96530 1.00586 0.98423 1.22889 0.97616 1.03487 0.93602 1.22592 0.85848 0.95826 0.95142 0.87560 1.20304 0.82242 0.86715 0.80167 1.90614 1.46600 1.62647 1.43285 1.48093 1.11104 1.18796 1.54690 1.19666 0.85367 0.91860 0.92325 1.21514 1.16470 1.24213 0.95676 0.91997 1.24924 0.96710 0.96761 0.95253 1.69912 1.29253 1.40080 1.13689 0.86529 0.80106 0.80085 0.81026 1.20472 1.21021 1.19661 1.21156 1.01520 0.81297 0.95672 1.22504 1.01348 0.87885 0.96639 1.62134 1.15096 1.02291 1.46346 1.22883 0.88687 0.99046 1.01001 1.22682 0.99525 0.85693 0.93330 1.87954 1.23841 1.48504 1.70472 1.22640 0.82398 0.96243 0.99906 1.22763 1.01304 0.91896 0.95039 1.88953 1.27062 1.73105 1.37878 0.91954 0.91430 0.91857 0.90714 0.90249 0.88886 0.90492 0.94818 0.93368 0.92480 0.90422 0.90120 0.90645 0.94411 0.93760 0.88865 0.92234 0.88493 0.92279 0.88706 0.89712 0.94072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.66 37.16 0.36 -1.34 16 2 C 0.07 0.99 3.98 -25.67 -0.10 0.88 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 4 C -0.15 -2.03 6.59 -24.72 -0.16 -2.19 16 5 C -0.14 -2.27 4.71 -25.20 -0.12 -2.39 16 6 C 0.07 1.30 3.04 -27.31 -0.08 1.22 16 7 H 0.11 2.20 7.74 -51.93 -0.40 1.80 16 8 C 0.52 11.20 6.86 -10.98 -0.08 11.13 16 9 O -0.55 -13.29 16.11 -14.01 -0.23 -13.51 16 10 N -0.59 -12.33 2.46 -175.06 -0.43 -12.76 16 11 C 0.23 5.14 4.77 -5.20 -0.02 5.11 16 12 C -0.54 -13.58 9.13 -34.44 -0.31 -13.89 16 13 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 14 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -23.54 13.29 55.43 0.74 -22.81 16 16 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 C 0.13 2.37 5.34 -4.04 -0.02 2.35 16 21 C 0.04 0.73 5.28 -3.83 -0.02 0.71 16 22 N -0.53 -7.67 4.73 -234.31 -1.11 -8.78 16 23 C 0.01 0.16 5.44 -3.71 -0.02 0.14 16 24 C 0.06 0.76 7.01 37.21 0.26 1.02 16 25 O -0.39 -5.02 10.83 -35.23 -0.38 -5.41 16 26 C 0.07 0.72 7.01 37.21 0.26 0.98 16 27 C 0.02 0.23 5.64 -3.71 -0.02 0.21 16 28 O -0.35 -6.77 10.44 -54.80 -0.57 -7.35 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 32 H 0.07 0.99 8.05 -51.93 -0.42 0.57 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.53 7.54 -51.93 -0.39 1.14 16 35 H 0.08 1.29 7.44 -51.93 -0.39 0.90 16 36 H 0.03 0.80 8.07 -51.93 -0.42 0.39 16 37 H 0.05 1.08 4.44 -51.93 -0.23 0.85 16 38 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 39 H 0.08 1.42 6.45 -51.93 -0.33 1.09 16 40 H 0.08 1.59 7.42 -51.93 -0.39 1.20 16 41 H 0.08 1.29 8.04 -51.93 -0.42 0.88 16 42 H 0.04 0.63 8.12 -51.93 -0.42 0.21 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.09 1.25 6.38 -51.93 -0.33 0.92 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 50 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 392.06 15.07 5.91 5.91 Total: -1.00 -29.92 392.06 -10.03 -39.94 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -8.75 Total: 4.16 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -0.18 Total: 5.54 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: -0.80 Total: -44.34 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -1.18 Total: -26.26 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.92 -10.03 -39.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151227987.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.602 kcal (2) G-P(sol) polarization free energy of solvation -29.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds