Wall clock time and date at job start Fri Apr 10 2020 18:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.54980 * 2 1 4 4 C 1.54997 * 110.61472 * 236.95273 * 2 1 3 5 5 C 1.54810 * 102.09240 * 204.47323 * 4 2 1 6 6 C 1.54101 * 104.18639 * 20.88217 * 5 4 2 7 7 H 1.08997 * 110.00815 * 242.53493 * 6 5 4 8 8 C 1.50705 * 109.88158 * 121.45037 * 6 5 4 9 9 O 1.21277 * 120.00158 * 245.71604 * 8 6 5 10 10 N 1.34783 * 119.99577 * 65.71459 * 8 6 5 11 11 C 1.46500 * 119.99986 * 0.02562 * 10 8 6 12 12 C 1.50696 * 109.47584 * 89.99781 * 11 10 8 13 13 H 1.08005 * 120.00089 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00499 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00031 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00200 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47036 * 90.00304 * 16 14 12 18 18 H 1.48508 * 109.47059 * 209.99801 * 16 14 12 19 19 H 1.48495 * 109.47079 * 330.00027 * 16 14 12 20 20 C 1.46497 * 119.99868 * 180.02562 * 10 8 6 21 21 C 1.52998 * 109.47137 * 90.00252 * 20 10 8 22 22 N 1.46896 * 109.47093 * 180.02562 * 21 20 10 23 23 C 1.47010 * 111.00145 * 293.63098 * 22 21 20 24 24 C 1.53097 * 109.26224 * 177.60860 * 23 22 21 25 25 O 1.43017 * 109.25512 * 56.85034 * 24 23 22 26 26 C 1.43007 * 113.73805 * 301.32813 * 25 24 23 27 27 C 1.47013 * 110.99970 * 169.99822 * 22 21 20 28 28 O 1.43749 * 107.29638 * 2.02989 * 6 5 4 29 29 H 1.09001 * 109.47002 * 298.56958 * 1 2 3 30 30 H 1.08993 * 109.46955 * 58.57395 * 1 2 3 31 31 H 1.09000 * 109.47050 * 178.57224 * 1 2 3 32 32 H 1.09006 * 110.90676 * 322.67101 * 4 2 1 33 33 H 1.09002 * 110.91071 * 86.27894 * 4 2 1 34 34 H 1.08990 * 110.49098 * 262.20706 * 5 4 2 35 35 H 1.08996 * 110.48835 * 139.55493 * 5 4 2 36 36 H 1.09004 * 109.47002 * 210.00014 * 11 10 8 37 37 H 1.09005 * 109.47045 * 329.99564 * 11 10 8 38 38 H 0.96995 * 120.00291 * 180.02562 * 15 14 12 39 39 H 1.08996 * 109.47001 * 210.00081 * 20 10 8 40 40 H 1.09003 * 109.47077 * 330.00295 * 20 10 8 41 41 H 1.09006 * 109.46954 * 299.99682 * 21 20 10 42 42 H 1.08997 * 109.47306 * 59.99659 * 21 20 10 43 43 H 1.09002 * 109.51101 * 297.54821 * 23 22 21 44 44 H 1.09001 * 109.50617 * 57.67362 * 23 22 21 45 45 H 1.08997 * 109.50806 * 296.91728 * 24 23 22 46 46 H 1.08998 * 109.50455 * 176.78225 * 24 23 22 47 47 H 1.08997 * 109.51046 * 298.73652 * 26 25 24 48 48 H 1.09001 * 109.54195 * 178.62823 * 26 25 24 49 49 H 1.08999 * 109.51046 * 302.32953 * 27 22 21 50 50 H 1.09003 * 109.50749 * 62.45596 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0758 -0.7911 -1.2160 5 6 3.4795 -1.2178 -0.7219 6 6 3.3840 -1.1243 0.8133 7 1 4.0856 -0.3779 1.1859 8 6 3.6889 -2.4659 1.4284 9 8 2.8234 -3.0697 2.0261 10 7 4.9234 -2.9946 1.3143 11 6 5.9689 -2.2649 0.5927 12 6 6.7136 -1.3737 1.5530 13 1 6.4357 -1.3526 2.5965 14 6 7.7498 -0.5853 1.0997 15 7 8.0881 -0.6106 -0.1710 16 14 8.6725 0.5199 2.2899 17 1 9.8206 -0.2240 2.8675 18 1 9.1717 1.7176 1.5677 19 1 7.7587 0.9447 3.3806 20 6 5.2196 -4.2990 1.9117 21 6 4.9307 -5.4038 0.8935 22 7 5.2272 -6.7118 1.4928 23 6 6.6662 -6.8563 1.7568 24 6 6.9224 -8.2053 2.4340 25 8 6.4164 -9.2537 1.6033 26 6 5.0176 -9.1445 1.3264 27 6 4.7421 -7.8051 0.6380 28 8 2.0385 -0.7337 1.1348 29 1 -0.3633 0.4915 0.9025 30 1 -0.3633 0.5358 -0.8769 31 1 -0.3633 -1.0274 -0.0256 32 1 1.4549 -1.6627 -1.4234 33 1 2.1509 -0.1507 -2.0949 34 1 4.2406 -0.5349 -1.0990 35 1 3.6974 -2.2406 -1.0289 36 1 6.6631 -2.9749 0.1430 37 1 5.5140 -1.6567 -0.1891 38 1 8.8173 -0.0562 -0.4899 39 1 6.2701 -4.3364 2.2001 40 1 4.5954 -4.4451 2.7933 41 1 3.8802 -5.3664 0.6051 42 1 5.5549 -5.2577 0.0119 43 1 7.2152 -6.8111 0.8163 44 1 6.9987 -6.0512 2.4120 45 1 6.4169 -8.2298 3.3994 46 1 7.9939 -8.3415 2.5799 47 1 4.4567 -9.1963 2.2595 48 1 4.7108 -9.9602 0.6716 49 1 3.6700 -7.6925 0.4764 50 1 5.2603 -7.7751 -0.3205 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151227987.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:39 Heat of formation + Delta-G solvation = -138.361431 kcal Electronic energy + Delta-G solvation = -29540.916000 eV Core-core repulsion = 25567.491559 eV Total energy + Delta-G solvation = -3973.424442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.54429 -40.56866 -39.54640 -37.41485 -36.45974 -34.57058 -33.27198 -32.94865 -32.19423 -31.04611 -29.08846 -28.12486 -26.58319 -25.08570 -25.02002 -23.58406 -22.83633 -22.14560 -21.39315 -20.17595 -18.75792 -18.04382 -17.89065 -17.42937 -17.30513 -17.10799 -16.45146 -16.28774 -16.25046 -16.00084 -15.74342 -15.54599 -15.14857 -14.82745 -14.65002 -14.45384 -14.29734 -14.01480 -13.65603 -13.39758 -13.34000 -13.22057 -13.16462 -12.89430 -12.77135 -12.53689 -12.51587 -12.37468 -12.34051 -12.16342 -11.92486 -11.83606 -11.79749 -11.63967 -11.45778 -11.04585 -10.73292 -10.62029 -10.37543 -9.63377 -9.44252 -8.22888 -6.36603 1.39604 1.42815 1.50954 1.61376 1.93206 2.39330 2.72196 2.93162 3.04242 3.07850 3.50223 3.60382 3.80252 3.86950 3.89568 3.94681 3.96201 4.05790 4.17339 4.25254 4.28917 4.34974 4.37950 4.40921 4.47001 4.56122 4.65077 4.69126 4.74452 4.76416 4.79174 4.82157 4.87507 4.89911 4.93261 4.97564 4.98879 5.00032 5.15890 5.20810 5.28840 5.60055 5.72430 5.83104 5.89319 5.95661 6.03013 6.14571 6.47456 6.76150 7.22753 7.36777 8.82483 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.008347 B = 0.004434 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3353.766539 B = 6313.212197 C = 8946.429188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.056 3.944 3 H 0.082 0.918 4 C -0.138 4.138 5 C -0.134 4.134 6 C 0.068 3.932 7 H 0.089 0.911 8 C 0.513 3.487 9 O -0.581 6.581 10 N -0.593 5.593 11 C 0.242 3.758 12 C -0.551 4.551 13 H 0.048 0.952 14 C 0.030 3.970 15 N -0.914 5.914 16 Si 0.950 3.050 17 H -0.275 1.275 18 H -0.278 1.278 19 H -0.275 1.275 20 C 0.129 3.871 21 C 0.062 3.938 22 N -0.540 5.540 23 C 0.011 3.989 24 C 0.068 3.932 25 O -0.402 6.402 26 C 0.066 3.934 27 C 0.017 3.983 28 O -0.379 6.379 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.020 0.980 37 H 0.052 0.948 38 H 0.269 0.731 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.031 0.969 43 H 0.036 0.964 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.116 0.884 47 H 0.063 0.937 48 H 0.121 0.879 49 H 0.093 0.907 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.287 -7.253 -3.227 10.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.001 4.001 3 H 0.099 0.901 4 C -0.176 4.176 5 C -0.172 4.172 6 C 0.007 3.993 7 H 0.106 0.894 8 C 0.302 3.698 9 O -0.462 6.462 10 N -0.324 5.324 11 C 0.122 3.878 12 C -0.590 4.590 13 H 0.066 0.934 14 C -0.171 4.171 15 N -0.552 5.552 16 Si 0.776 3.224 17 H -0.201 1.201 18 H -0.203 1.203 19 H -0.200 1.200 20 C 0.005 3.995 21 C -0.067 4.067 22 N -0.266 5.266 23 C -0.117 4.117 24 C -0.009 4.009 25 O -0.321 6.321 26 C -0.010 4.010 27 C -0.111 4.111 28 O -0.298 6.298 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.130 0.870 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.038 0.962 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.106 0.894 45 H 0.083 0.917 46 H 0.134 0.866 47 H 0.081 0.919 48 H 0.139 0.861 49 H 0.111 0.889 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.841 -7.714 -2.486 11.277 hybrid contribution 1.323 1.091 -0.148 1.722 sum -6.517 -6.623 -2.635 9.658 Atomic orbital electron populations 1.21766 0.91345 1.02828 1.03581 1.23532 0.96684 0.95585 0.84302 0.90055 1.23210 0.94122 1.01178 0.99048 1.22843 0.99786 1.03181 0.91432 1.22482 0.86075 0.93780 0.96913 0.89360 1.20751 0.81945 0.87425 0.79724 1.90582 1.47310 1.63705 1.44650 1.48093 1.10631 1.19422 1.54288 1.19398 0.85204 0.91222 0.91988 1.21642 1.17054 1.24912 0.95349 0.93410 1.25522 0.97292 0.97759 0.96559 1.69978 1.29726 1.40725 1.14809 0.85669 0.78881 0.78688 0.79158 1.20050 1.20299 1.19974 1.21202 1.01141 0.81253 0.95875 1.22199 1.00519 0.88435 0.95523 1.62143 1.15905 1.01828 1.46680 1.22923 0.87884 1.00195 1.00672 1.22742 1.00800 0.84300 0.93028 1.87941 1.24803 1.48693 1.70652 1.22782 0.81685 0.96060 1.00515 1.22870 1.01677 0.91853 0.94724 1.88932 1.26629 1.73817 1.40461 0.92101 0.88096 0.92666 0.90271 0.87023 0.88958 0.91171 0.96168 0.93026 0.92194 0.90435 0.91369 0.91542 0.95046 0.94615 0.89404 0.91743 0.86614 0.91879 0.86148 0.88914 0.94396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.66 71.98 0.70 -2.30 16 2 C 0.06 1.53 3.98 31.28 0.12 1.66 16 3 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 4 C -0.14 -3.46 6.59 31.90 0.21 -3.25 16 5 C -0.13 -4.38 4.71 31.58 0.15 -4.23 16 6 C 0.07 2.72 3.04 30.22 0.09 2.81 16 7 H 0.09 3.79 7.74 -2.39 -0.02 3.77 16 8 C 0.51 22.84 6.86 87.66 0.60 23.44 16 9 O -0.58 -28.75 16.11 15.69 0.25 -28.50 16 10 N -0.59 -25.38 2.46 -826.15 -2.03 -27.41 16 11 C 0.24 11.20 4.77 85.63 0.41 11.61 16 12 C -0.55 -28.14 9.13 25.60 0.23 -27.91 16 13 H 0.05 2.54 7.81 -2.91 -0.02 2.51 16 14 C 0.03 1.52 5.46 84.65 0.46 1.98 16 15 N -0.91 -48.11 13.29 21.45 0.28 -47.83 16 16 Si 0.95 40.99 29.54 68.60 2.03 43.01 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 18 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 20 C 0.13 4.94 5.34 86.38 0.46 5.40 16 21 C 0.06 2.08 5.28 86.30 0.46 2.53 16 22 N -0.54 -15.50 4.73 -895.22 -4.23 -19.73 16 23 C 0.01 0.30 5.44 86.31 0.47 0.77 16 24 C 0.07 1.51 7.01 72.01 0.50 2.02 16 25 O -0.40 -9.72 10.83 -148.98 -1.61 -11.33 16 26 C 0.07 1.35 7.01 72.02 0.50 1.85 16 27 C 0.02 0.40 5.64 86.32 0.49 0.89 16 28 O -0.38 -14.68 10.44 -130.27 -1.36 -16.04 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.28 8.13 -2.39 -0.02 1.26 16 32 H 0.08 1.93 8.05 -2.38 -0.02 1.91 16 33 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.09 3.00 7.54 -2.39 -0.02 2.98 16 35 H 0.07 2.36 7.44 -2.39 -0.02 2.34 16 36 H 0.02 0.99 8.07 -2.38 -0.02 0.97 16 37 H 0.05 2.37 4.44 -2.38 -0.01 2.36 16 38 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 39 H 0.08 2.95 6.45 -2.39 -0.02 2.93 16 40 H 0.07 2.79 7.42 -2.39 -0.02 2.77 16 41 H 0.07 2.33 8.04 -2.38 -0.02 2.31 16 42 H 0.03 1.08 8.12 -2.39 -0.02 1.06 16 43 H 0.04 1.00 8.14 -2.39 -0.02 0.99 16 44 H 0.09 2.39 6.38 -2.39 -0.02 2.38 16 45 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 48 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.09 2.04 8.09 -2.39 -0.02 2.02 16 50 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -64.19 392.06 0.09 -64.10 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 0.90 Total: 26.46 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: 5.86 Total: 17.27 kcal Atomic # 7 Polarization: -88.99 SS G_CDS: -5.98 Total: -94.97 kcal Atomic # 8 Polarization: -53.16 SS G_CDS: -2.72 Total: -55.88 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.01 kcal Total: -64.19 0.09 -64.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151227987.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.264 kcal (2) G-P(sol) polarization free energy of solvation -64.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds