Wall clock time and date at job start Fri Apr 10 2020 18:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.82238 * 2 1 4 4 C 1.54385 * 109.83341 * 239.11303 * 2 1 3 5 5 C 1.55303 * 102.25248 * 219.13273 * 4 2 1 6 6 C 1.54940 * 100.94650 * 34.12837 * 5 4 2 7 7 H 1.09009 * 110.30800 * 82.56771 * 6 5 4 8 8 C 1.50694 * 110.31473 * 204.64153 * 6 5 4 9 9 O 1.21283 * 120.00331 * 106.97739 * 8 6 5 10 10 N 1.34783 * 120.00042 * 286.98598 * 8 6 5 11 11 C 1.46498 * 119.99833 * 354.63533 * 10 8 6 12 12 C 1.50697 * 109.47568 * 275.32218 * 11 10 8 13 13 H 1.08004 * 119.99895 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00343 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99930 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00236 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47038 * 89.99799 * 16 14 12 18 18 H 1.48496 * 109.47217 * 209.99812 * 16 14 12 19 19 H 1.48506 * 109.46965 * 330.00330 * 16 14 12 20 20 C 1.46497 * 120.00074 * 174.64459 * 10 8 6 21 21 C 1.52995 * 109.47486 * 89.99635 * 20 10 8 22 22 N 1.46897 * 109.47329 * 179.97438 * 21 20 10 23 23 C 1.47016 * 111.00198 * 169.99951 * 22 21 20 24 24 C 1.53099 * 109.25719 * 177.61055 * 23 22 21 25 25 O 1.43008 * 109.26305 * 56.84455 * 24 23 22 26 26 C 1.43022 * 113.74208 * 301.33506 * 25 24 23 27 27 C 1.47016 * 111.00154 * 46.36083 * 22 21 20 28 28 O 1.43239 * 109.82930 * 120.97723 * 2 1 3 29 29 H 1.09003 * 109.46973 * 180.88749 * 1 2 3 30 30 H 1.09000 * 109.47482 * 300.88766 * 1 2 3 31 31 H 1.08994 * 109.47333 * 60.89018 * 1 2 3 32 32 H 1.08995 * 110.84698 * 100.93899 * 4 2 1 33 33 H 1.09005 * 111.01699 * 337.39791 * 4 2 1 34 34 H 1.09000 * 111.12148 * 276.20881 * 5 4 2 35 35 H 1.09004 * 111.12675 * 152.05294 * 5 4 2 36 36 H 1.09002 * 109.47245 * 35.32022 * 11 10 8 37 37 H 1.09000 * 109.47343 * 155.31999 * 11 10 8 38 38 H 0.96993 * 120.00101 * 180.02562 * 15 14 12 39 39 H 1.09003 * 109.47020 * 329.98958 * 20 10 8 40 40 H 1.09008 * 109.46946 * 209.99723 * 20 10 8 41 41 H 1.09002 * 109.47078 * 59.99893 * 21 20 10 42 42 H 1.09000 * 109.46748 * 299.99954 * 21 20 10 43 43 H 1.09000 * 109.50712 * 57.67489 * 23 22 21 44 44 H 1.08996 * 109.50440 * 297.53823 * 23 22 21 45 45 H 1.08996 * 109.50631 * 176.78876 * 24 23 22 46 46 H 1.09004 * 109.50516 * 296.91380 * 24 23 22 47 47 H 1.09001 * 109.50860 * 178.60282 * 26 25 24 48 48 H 1.09005 * 109.50120 * 298.73504 * 26 25 24 49 49 H 1.09001 * 109.50255 * 62.45881 * 27 22 21 50 50 H 1.09000 * 109.51055 * 302.33470 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0538 -0.7455 -1.2463 5 6 3.2730 -1.5216 -0.6779 6 6 2.7747 -1.8450 0.7531 7 1 2.1414 -2.7322 0.7418 8 6 3.9447 -2.0504 1.6805 9 8 4.2194 -1.2058 2.5064 10 7 4.6858 -3.1726 1.5920 11 6 4.2859 -4.2443 0.6767 12 6 3.2730 -5.1313 1.3536 13 1 2.9589 -4.9183 2.3648 14 6 2.7480 -6.2153 0.6826 15 7 3.1309 -6.4750 -0.5485 16 14 1.4930 -7.3152 1.5220 17 1 0.1259 -6.8013 1.2529 18 1 1.6149 -8.6978 0.9942 19 1 1.7403 -7.3206 2.9863 20 6 5.8913 -3.3208 2.4112 21 6 5.5243 -3.9745 3.7450 22 7 6.7332 -4.1237 4.5662 23 6 6.3916 -4.5260 5.9384 24 6 7.6798 -4.7275 6.7409 25 8 8.4508 -3.5235 6.7056 26 6 8.8016 -3.1029 5.3845 27 6 7.5249 -2.8849 4.5682 28 8 2.0158 -0.6935 1.1553 29 1 -0.3633 -1.0276 0.0159 30 1 -0.3634 0.5275 0.8819 31 1 -0.3634 0.4999 -0.8978 32 1 2.3672 -0.0409 -2.0166 33 1 1.3027 -1.4335 -1.6347 34 1 4.1620 -0.8915 -0.6513 35 1 3.4572 -2.4339 -1.2453 36 1 3.8461 -3.8100 -0.2211 37 1 5.1608 -4.8344 0.4038 38 1 2.7614 -7.2374 -1.0208 39 1 6.3282 -2.3394 2.5956 40 1 6.6128 -3.9469 1.8861 41 1 5.0875 -4.9560 3.5605 42 1 4.8029 -3.3485 4.2700 43 1 5.8279 -5.4586 5.9146 44 1 5.7892 -3.7475 6.4065 45 1 7.4308 -4.9702 7.7739 46 1 8.2571 -5.5423 6.3039 47 1 9.3639 -2.1706 5.4366 48 1 9.4115 -3.8705 4.9081 49 1 6.9405 -2.0803 5.0145 50 1 7.7883 -2.6195 3.5444 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151228111.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:44 Heat of formation + Delta-G solvation = -118.956030 kcal Electronic energy + Delta-G solvation = -29681.459343 eV Core-core repulsion = 25708.876383 eV Total energy + Delta-G solvation = -3972.582960 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.00997 -39.44905 -38.15892 -36.03068 -34.83401 -32.65513 -32.02845 -31.58442 -31.15115 -29.55737 -27.36745 -26.85141 -25.36276 -23.97841 -23.20402 -22.28885 -21.50490 -20.84615 -20.14972 -18.52651 -17.13893 -16.86316 -16.29245 -16.08657 -15.96044 -15.47366 -15.12549 -15.02668 -14.76741 -14.69362 -14.47552 -14.06514 -13.81604 -13.67104 -13.19229 -12.83814 -12.75949 -12.51697 -12.28997 -12.14411 -11.97834 -11.90453 -11.63656 -11.56536 -11.37322 -11.30043 -11.18388 -10.95118 -10.84506 -10.68428 -10.64636 -10.55274 -10.41673 -10.11185 -9.76184 -9.62550 -9.49696 -8.79152 -8.60090 -8.19602 -7.82021 -6.25300 -4.32329 3.17936 3.19045 3.26590 3.31611 3.54112 3.83427 4.03371 4.25332 4.42607 4.71719 4.92439 4.94169 5.06555 5.07112 5.08350 5.11789 5.20351 5.31409 5.35246 5.45212 5.48531 5.51696 5.57300 5.60912 5.68810 5.70104 5.76638 5.86262 5.87617 5.89038 5.97360 5.99205 6.00136 6.13507 6.15419 6.30246 6.33567 6.42189 6.49953 6.69256 7.06519 7.07779 7.11937 7.17766 7.30797 7.53091 7.70133 7.98150 8.21747 8.72494 8.95052 9.35910 10.81295 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.009442 B = 0.004329 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.867196 B = 6466.278501 C = 8517.988230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.075 3.925 3 H 0.075 0.925 4 C -0.149 4.149 5 C -0.143 4.143 6 C 0.069 3.931 7 H 0.112 0.888 8 C 0.521 3.479 9 O -0.557 6.557 10 N -0.594 5.594 11 C 0.231 3.769 12 C -0.539 4.539 13 H 0.061 0.939 14 C 0.068 3.932 15 N -0.890 5.890 16 Si 0.894 3.106 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.125 3.875 21 C 0.043 3.957 22 N -0.533 5.533 23 C 0.018 3.982 24 C 0.066 3.934 25 O -0.390 6.390 26 C 0.065 3.935 27 C 0.010 3.990 28 O -0.356 6.356 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.042 0.958 37 H 0.039 0.961 38 H 0.266 0.734 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.036 0.964 43 H 0.086 0.914 44 H 0.041 0.959 45 H 0.095 0.905 46 H 0.059 0.941 47 H 0.095 0.905 48 H 0.058 0.942 49 H 0.044 0.956 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.213 6.530 2.243 8.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.017 3.983 3 H 0.093 0.907 4 C -0.186 4.186 5 C -0.180 4.180 6 C 0.009 3.991 7 H 0.130 0.870 8 C 0.308 3.692 9 O -0.436 6.436 10 N -0.327 5.327 11 C 0.112 3.888 12 C -0.577 4.577 13 H 0.079 0.921 14 C -0.135 4.135 15 N -0.528 5.528 16 Si 0.721 3.279 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.198 1.198 20 C 0.002 3.998 21 C -0.085 4.085 22 N -0.259 5.259 23 C -0.111 4.111 24 C -0.011 4.011 25 O -0.308 6.308 26 C -0.012 4.012 27 C -0.118 4.118 28 O -0.275 6.275 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.112 0.888 42 H 0.055 0.945 43 H 0.105 0.895 44 H 0.059 0.941 45 H 0.113 0.887 46 H 0.077 0.923 47 H 0.113 0.887 48 H 0.077 0.923 49 H 0.062 0.938 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.631 6.620 2.669 8.508 hybrid contribution -1.447 -0.472 0.211 1.537 sum 3.184 6.148 2.879 7.498 Atomic orbital electron populations 1.22138 0.95136 1.02786 1.01814 1.22702 0.94148 0.96176 0.85299 0.90714 1.23177 0.98065 0.99591 0.97782 1.23236 0.98211 1.01792 0.94808 1.22861 0.92579 0.91089 0.92611 0.87024 1.20276 0.83351 0.81478 0.84083 1.90604 1.70473 1.44831 1.37691 1.48125 1.24963 1.17795 1.41775 1.19622 0.96465 0.84339 0.88389 1.21490 1.24246 1.11141 1.00853 0.92075 1.24907 0.96592 0.97234 0.94804 1.69906 1.43198 1.28941 1.10727 0.86551 0.81578 0.79827 0.79907 1.20453 1.21028 1.19780 1.21345 0.87341 1.00228 0.90934 1.22585 0.90085 1.02425 0.93427 1.62326 1.21293 1.31525 1.10722 1.22763 0.97623 1.01602 0.89090 1.22649 0.91128 0.87188 1.00172 1.87946 1.72560 1.42766 1.27567 1.22682 0.95515 1.00193 0.82829 1.22884 0.95570 0.91859 1.01529 1.88494 1.69632 1.40142 1.29245 0.91914 0.92145 0.91803 0.90226 0.89981 0.90698 0.88125 0.94007 0.94266 0.92468 0.91168 0.90174 0.88765 0.94545 0.89519 0.94078 0.88739 0.92275 0.88731 0.92324 0.93799 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.44 37.16 0.35 -1.66 16 2 C 0.07 1.09 4.16 -26.01 -0.11 0.98 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.15 -1.95 6.54 -24.78 -0.16 -2.12 16 5 C -0.14 -2.27 6.04 -24.49 -0.15 -2.41 16 6 C 0.07 1.34 2.92 -26.86 -0.08 1.26 16 7 H 0.11 2.34 7.12 -51.92 -0.37 1.97 16 8 C 0.52 11.18 6.96 -10.99 -0.08 11.10 16 9 O -0.56 -13.31 16.21 -13.63 -0.22 -13.53 16 10 N -0.59 -12.17 2.47 -175.06 -0.43 -12.60 16 11 C 0.23 5.16 4.87 -5.20 -0.03 5.14 16 12 C -0.54 -13.35 8.60 -34.44 -0.30 -13.64 16 13 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 14 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -23.37 13.29 55.43 0.74 -22.63 16 16 Si 0.89 20.08 29.54 -169.99 -5.02 15.06 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 C 0.13 2.28 4.68 -4.05 -0.02 2.26 16 21 C 0.04 0.78 5.60 -3.83 -0.02 0.76 16 22 N -0.53 -8.27 4.88 -234.31 -1.14 -9.41 16 23 C 0.02 0.25 5.63 -3.71 -0.02 0.23 16 24 C 0.07 0.79 7.01 37.21 0.26 1.05 16 25 O -0.39 -5.32 10.83 -35.23 -0.38 -5.70 16 26 C 0.06 0.78 7.01 37.20 0.26 1.04 16 27 C 0.01 0.14 4.94 -3.71 -0.02 0.12 16 28 O -0.36 -6.92 10.28 -54.41 -0.56 -7.48 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.04 7.86 -51.93 -0.41 0.63 16 34 H 0.07 1.16 8.05 -51.93 -0.42 0.74 16 35 H 0.10 1.62 6.37 -51.93 -0.33 1.29 16 36 H 0.04 0.94 4.77 -51.93 -0.25 0.69 16 37 H 0.04 0.92 7.83 -51.93 -0.41 0.52 16 38 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 39 H 0.07 1.26 5.64 -51.93 -0.29 0.96 16 40 H 0.08 1.38 7.86 -51.92 -0.41 0.97 16 41 H 0.09 1.87 7.98 -51.93 -0.41 1.46 16 42 H 0.04 0.74 8.08 -51.93 -0.42 0.32 16 43 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.09 1.21 6.05 -51.93 -0.31 0.89 16 LS Contribution 390.08 15.07 5.88 5.88 Total: -1.00 -29.61 390.08 -9.99 -39.60 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -8.65 Total: 5.08 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -0.20 Total: 5.74 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: -0.84 Total: -44.65 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -1.16 Total: -26.71 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.61 -9.99 -39.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151228111.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.353 kcal (2) G-P(sol) polarization free energy of solvation -29.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds