Wall clock time and date at job start Fri Apr 10 2020 18:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47010 * 2 1 4 4 C 1.50696 * 109.47079 * 239.99890 * 2 1 3 5 5 O 1.21284 * 120.00092 * 244.93858 * 4 2 1 6 6 N 1.34772 * 120.00101 * 64.94459 * 4 2 1 7 7 C 1.46501 * 120.00081 * 5.34613 * 6 4 2 8 8 C 1.46500 * 120.00184 * 185.35170 * 6 4 2 9 9 C 1.50700 * 109.47359 * 89.99512 * 8 6 4 10 10 H 1.08000 * 119.99936 * 0.02562 * 9 8 6 11 11 C 1.37877 * 119.99975 * 180.02562 * 9 8 6 12 12 N 1.31513 * 120.00006 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99790 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47484 * 60.00084 * 13 11 9 15 15 H 1.48506 * 109.46745 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47046 * 299.99791 * 13 11 9 17 17 N 1.46900 * 109.46600 * 119.99730 * 2 1 3 18 18 C 1.47012 * 111.00103 * 58.96239 * 17 2 1 19 19 C 1.53102 * 109.26027 * 177.60341 * 18 17 2 20 20 O 1.43016 * 109.25730 * 56.84528 * 19 18 17 21 21 C 1.43018 * 113.73708 * 301.32876 * 20 19 18 22 22 H 1.08999 * 109.50723 * 298.69410 * 21 20 19 23 23 C 1.53003 * 109.50702 * 178.60566 * 21 20 19 24 24 H 1.08996 * 110.67391 * 173.57785 * 23 21 20 25 25 C 1.54997 * 110.61416 * 50.61294 * 23 21 20 26 26 C 1.54817 * 102.08901 * 204.47463 * 25 23 21 27 27 C 1.54105 * 104.18784 * 20.88270 * 26 25 23 28 28 O 1.43748 * 107.29306 * 2.02901 * 27 26 25 29 29 C 1.47013 * 111.00387 * 295.27528 * 17 2 1 30 30 H 1.09002 * 109.46937 * 190.77943 * 1 2 3 31 31 H 1.08997 * 109.47245 * 310.78203 * 1 2 3 32 32 H 1.09001 * 109.46748 * 70.78656 * 1 2 3 33 33 H 1.09000 * 109.46654 * 96.00359 * 7 6 4 34 34 H 1.08996 * 109.47136 * 216.00256 * 7 6 4 35 35 H 1.09002 * 109.47135 * 336.00580 * 7 6 4 36 36 H 1.09005 * 109.47172 * 209.99754 * 8 6 4 37 37 H 1.08998 * 109.46820 * 329.99637 * 8 6 4 38 38 H 0.97004 * 119.99581 * 179.97438 * 12 11 9 39 39 H 1.08996 * 109.51273 * 57.66404 * 18 17 2 40 40 H 1.09009 * 109.54135 * 297.55786 * 18 17 2 41 41 H 1.08995 * 109.50493 * 296.90631 * 19 18 17 42 42 H 1.09003 * 109.50487 * 176.77905 * 19 18 17 43 43 H 1.08997 * 110.91101 * 86.27993 * 25 23 21 44 44 H 1.08998 * 110.94124 * 322.68432 * 25 23 21 45 45 H 1.08995 * 110.48646 * 262.20226 * 26 25 23 46 46 H 1.09004 * 110.48772 * 139.55693 * 26 25 23 47 47 H 1.08992 * 109.87624 * 242.60492 * 27 26 25 48 48 H 1.09001 * 109.87947 * 121.45075 * 27 26 25 49 49 H 1.08999 * 109.47241 * 62.44038 * 29 17 2 50 50 H 1.09001 * 109.54461 * 302.31093 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.6539 -1.7461 -1.1214 6 7 1.7909 -0.1948 -2.4520 7 6 1.1439 1.1133 -2.5802 8 6 2.1755 -0.9425 -3.6517 9 6 1.0345 -1.8299 -4.0779 10 1 0.1147 -1.8361 -3.5119 11 6 1.1649 -2.6340 -5.1903 12 7 2.2851 -2.6269 -5.8792 13 14 -0.2498 -3.7335 -5.7189 14 1 -1.4409 -2.8986 -6.0174 15 1 0.1406 -4.4924 -6.9343 16 1 -0.5732 -4.6842 -4.6250 17 7 2.0196 -0.6925 1.1995 18 6 1.5279 -2.0772 1.2460 19 6 2.1087 -2.7782 2.4770 20 8 1.7577 -2.0393 3.6501 21 6 2.2215 -0.6864 3.6386 22 1 3.3101 -0.6753 3.5854 23 6 1.7651 0.0210 4.9162 24 1 2.2020 1.0174 4.9814 25 6 2.1323 -0.8190 6.1660 26 6 1.0941 -0.3269 7.2038 27 6 -0.0352 0.2808 6.3494 28 8 0.3241 0.0932 4.9702 29 6 1.6427 0.0363 2.4194 30 1 -0.3633 -1.0096 0.1922 31 1 -0.3633 0.6712 0.7781 32 1 -0.3633 0.3382 -0.9705 33 1 1.9042 1.8837 -2.7084 34 1 0.4823 1.1080 -3.4464 35 1 0.5637 1.3213 -1.6811 36 1 2.4122 -0.2443 -4.4547 37 1 3.0502 -1.5550 -3.4332 38 1 2.3769 -3.1929 -6.6616 39 1 1.8408 -2.6050 0.3451 40 1 0.4396 -2.0758 1.3076 41 1 3.1940 -2.8279 2.3892 42 1 1.7020 -3.7871 2.5470 43 1 3.1473 -0.6000 6.4974 44 1 2.0106 -1.8841 5.9690 45 1 1.5327 0.4318 7.8519 46 1 0.7185 -1.1631 7.7936 47 1 -0.1321 1.3447 6.5657 48 1 -0.9751 -0.2294 6.5602 49 1 0.5563 0.0729 2.4998 50 1 2.0393 1.0507 2.3754 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152223758.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:49 Heat of formation + Delta-G solvation = -97.183484 kcal Electronic energy + Delta-G solvation = -29713.818618 eV Core-core repulsion = 25742.179786 eV Total energy + Delta-G solvation = -3971.638832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.45407 -39.51296 -38.28328 -35.78559 -34.84854 -32.69777 -32.40105 -32.11156 -30.78421 -28.65722 -27.65081 -26.49854 -25.82704 -24.23767 -23.83316 -22.56498 -21.72457 -21.16167 -19.85256 -18.41485 -17.16587 -16.77597 -16.52346 -16.28294 -15.84546 -15.81094 -15.35404 -14.80446 -14.73262 -14.61820 -14.43666 -14.17560 -14.08208 -13.78415 -13.48631 -13.13792 -12.73312 -12.59358 -12.35122 -12.19768 -12.02807 -11.97252 -11.75701 -11.57311 -11.31397 -11.30540 -11.11908 -11.06791 -10.95215 -10.86390 -10.79573 -10.54857 -10.30670 -10.13187 -9.87399 -9.64045 -9.60617 -8.67679 -8.43745 -8.07137 -7.60829 -6.04600 -4.09821 3.30952 3.35492 3.36220 3.43334 3.54603 3.62439 3.75703 4.18189 4.36997 4.44004 4.49875 4.64759 4.81830 4.93942 4.98338 5.07577 5.11197 5.17427 5.22435 5.27620 5.29722 5.36461 5.40993 5.43192 5.46835 5.54112 5.58562 5.60784 5.66976 5.70743 5.81413 5.84283 5.93610 5.96329 5.97671 6.07897 6.21213 6.33239 6.41346 6.68009 6.97222 7.11075 7.17331 7.28836 7.47187 7.56147 7.92108 8.23149 8.43984 8.89818 9.12055 9.55412 11.03280 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.023586 B = 0.002767 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.843489 B =10115.279758 C =10382.205743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.065 3.935 3 H 0.099 0.901 4 C 0.515 3.485 5 O -0.528 6.528 6 N -0.601 5.601 7 C 0.069 3.931 8 C 0.246 3.754 9 C -0.527 4.527 10 H 0.056 0.944 11 C 0.062 3.938 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 N -0.513 5.513 18 C -0.001 4.001 19 C 0.068 3.932 20 O -0.376 6.376 21 C 0.104 3.896 22 H 0.077 0.923 23 C 0.084 3.916 24 H 0.082 0.918 25 C -0.146 4.146 26 C -0.156 4.156 27 C 0.047 3.953 28 O -0.363 6.363 29 C 0.025 3.975 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.031 0.969 37 H 0.045 0.955 38 H 0.264 0.736 39 H 0.126 0.874 40 H 0.039 0.961 41 H 0.059 0.941 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.055 0.945 48 H 0.081 0.919 49 H 0.055 0.945 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.236 8.962 23.303 25.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.047 4.047 3 H 0.117 0.883 4 C 0.301 3.699 5 O -0.405 6.405 6 N -0.333 5.333 7 C -0.075 4.075 8 C 0.127 3.873 9 C -0.566 4.566 10 H 0.074 0.926 11 C -0.140 4.140 12 N -0.533 5.533 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 N -0.237 5.237 18 C -0.128 4.128 19 C -0.009 4.009 20 O -0.295 6.295 21 C 0.046 3.954 22 H 0.095 0.905 23 C 0.026 3.974 24 H 0.100 0.900 25 C -0.184 4.184 26 C -0.193 4.193 27 C -0.030 4.030 28 O -0.282 6.282 29 C -0.104 4.104 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.143 0.857 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.114 0.886 43 H 0.096 0.904 44 H 0.110 0.890 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.074 0.926 48 H 0.099 0.901 49 H 0.074 0.926 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.536 8.217 23.107 24.573 hybrid contribution -1.490 -0.270 -0.439 1.576 sum -3.026 7.947 22.668 24.210 Atomic orbital electron populations 1.22603 0.95638 1.03325 1.03448 1.21644 0.94133 0.98678 0.90261 0.88291 1.20016 0.80391 0.85525 0.83985 1.90538 1.40370 1.23969 1.85610 1.48088 1.58788 1.19232 1.07219 1.21938 0.97555 0.85160 1.02799 1.19275 0.96843 0.91186 0.80023 1.21386 1.00306 1.23894 1.11046 0.92604 1.24932 0.95992 0.96818 0.96304 1.69926 1.25150 1.39793 1.18402 0.86574 0.82257 0.80692 0.77985 1.20276 1.21154 1.20186 1.62142 1.58943 1.02269 1.00340 1.23260 0.97741 0.89894 1.01946 1.22673 0.99834 0.94758 0.83596 1.87962 1.78771 1.22297 1.40508 1.22059 0.97811 0.82974 0.92565 0.90499 1.23201 0.82332 0.97569 0.94289 0.90041 1.23086 0.99067 1.02304 0.93909 1.22929 0.96545 1.01214 0.98651 1.23114 0.98371 0.99628 0.81915 1.88956 1.20536 1.94130 1.24618 1.22697 1.00097 0.97754 0.89812 0.91449 0.91894 0.90120 0.93662 0.90994 0.91257 0.95075 0.93676 0.92647 0.85662 0.94286 0.92298 0.88594 0.90435 0.89036 0.90924 0.90548 0.92643 0.90059 0.92643 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.72 7.93 37.16 0.29 -2.43 16 2 C 0.06 1.03 1.94 -68.87 -0.13 0.89 16 3 H 0.10 1.36 7.73 -51.93 -0.40 0.96 16 4 C 0.51 10.73 6.78 -10.99 -0.07 10.65 16 5 O -0.53 -13.02 13.25 5.55 0.07 -12.94 16 6 N -0.60 -12.74 2.85 -182.96 -0.52 -13.26 16 7 C 0.07 1.10 9.71 59.85 0.58 1.68 16 8 C 0.25 6.44 5.23 -5.19 -0.03 6.42 16 9 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 10 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 13 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 N -0.51 -7.99 4.54 -227.72 -1.03 -9.02 16 18 C 0.00 -0.02 4.79 -3.71 -0.02 -0.04 16 19 C 0.07 0.95 7.01 37.21 0.26 1.22 16 20 O -0.38 -5.18 9.25 -38.57 -0.36 -5.53 16 21 C 0.10 1.24 2.82 -26.68 -0.08 1.17 16 22 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 23 C 0.08 0.84 3.25 -25.67 -0.08 0.75 16 24 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 25 C -0.15 -1.24 6.52 -24.72 -0.16 -1.40 16 26 C -0.16 -1.10 7.01 -25.20 -0.18 -1.27 16 27 C 0.05 0.39 7.70 37.73 0.29 0.68 16 28 O -0.36 -4.26 10.39 -38.57 -0.40 -4.66 16 29 C 0.02 0.32 4.48 -3.71 -0.02 0.30 16 30 H 0.07 1.06 5.91 -51.93 -0.31 0.75 16 31 H 0.06 0.76 7.14 -51.93 -0.37 0.39 16 32 H 0.08 1.14 5.40 -51.93 -0.28 0.86 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 35 H 0.07 0.90 4.12 -51.93 -0.21 0.69 16 36 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 37 H 0.05 1.34 7.35 -51.93 -0.38 0.95 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 39 H 0.13 2.48 5.23 -51.93 -0.27 2.21 16 40 H 0.04 0.64 6.20 -51.92 -0.32 0.32 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.93 7.07 -51.93 -0.37 0.56 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.06 0.77 6.21 -51.93 -0.32 0.45 16 50 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 378.65 15.07 5.71 5.71 Total: -1.00 -33.30 378.65 -8.85 -42.15 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -8.27 Total: 1.51 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 0.24 Total: 5.10 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.82 Total: -48.13 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.68 Total: -23.13 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.30 -8.85 -42.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152223758.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.034 kcal (2) G-P(sol) polarization free energy of solvation -33.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds