Wall clock time and date at job start Fri Apr 10 2020 18:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47010 * 2 1 4 4 C 1.50696 * 109.47079 * 239.99890 * 2 1 3 5 5 O 1.21284 * 120.00092 * 244.93858 * 4 2 1 6 6 N 1.34772 * 120.00101 * 64.94459 * 4 2 1 7 7 C 1.46501 * 120.00081 * 5.34613 * 6 4 2 8 8 C 1.46500 * 120.00184 * 185.35170 * 6 4 2 9 9 C 1.50700 * 109.47359 * 89.99512 * 8 6 4 10 10 H 1.08000 * 119.99936 * 0.02562 * 9 8 6 11 11 C 1.37877 * 119.99975 * 180.02562 * 9 8 6 12 12 N 1.31513 * 120.00006 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99790 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47484 * 60.00084 * 13 11 9 15 15 H 1.48506 * 109.46745 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47046 * 299.99791 * 13 11 9 17 17 N 1.46900 * 109.46600 * 119.99730 * 2 1 3 18 18 C 1.47012 * 111.00103 * 58.96239 * 17 2 1 19 19 C 1.53102 * 109.26027 * 177.60341 * 18 17 2 20 20 O 1.43016 * 109.25730 * 56.84528 * 19 18 17 21 21 C 1.43018 * 113.73708 * 301.32876 * 20 19 18 22 22 H 1.08999 * 109.50723 * 298.69410 * 21 20 19 23 23 C 1.53003 * 109.50702 * 178.60566 * 21 20 19 24 24 H 1.08996 * 110.67391 * 173.57785 * 23 21 20 25 25 C 1.54997 * 110.61416 * 50.61294 * 23 21 20 26 26 C 1.54817 * 102.08901 * 204.47463 * 25 23 21 27 27 C 1.54105 * 104.18784 * 20.88270 * 26 25 23 28 28 O 1.43748 * 107.29306 * 2.02901 * 27 26 25 29 29 C 1.47013 * 111.00387 * 295.27528 * 17 2 1 30 30 H 1.09002 * 109.46937 * 190.77943 * 1 2 3 31 31 H 1.08997 * 109.47245 * 310.78203 * 1 2 3 32 32 H 1.09001 * 109.46748 * 70.78656 * 1 2 3 33 33 H 1.09000 * 109.46654 * 96.00359 * 7 6 4 34 34 H 1.08996 * 109.47136 * 216.00256 * 7 6 4 35 35 H 1.09002 * 109.47135 * 336.00580 * 7 6 4 36 36 H 1.09005 * 109.47172 * 209.99754 * 8 6 4 37 37 H 1.08998 * 109.46820 * 329.99637 * 8 6 4 38 38 H 0.97004 * 119.99581 * 179.97438 * 12 11 9 39 39 H 1.08996 * 109.51273 * 57.66404 * 18 17 2 40 40 H 1.09009 * 109.54135 * 297.55786 * 18 17 2 41 41 H 1.08995 * 109.50493 * 296.90631 * 19 18 17 42 42 H 1.09003 * 109.50487 * 176.77905 * 19 18 17 43 43 H 1.08997 * 110.91101 * 86.27993 * 25 23 21 44 44 H 1.08998 * 110.94124 * 322.68432 * 25 23 21 45 45 H 1.08995 * 110.48646 * 262.20226 * 26 25 23 46 46 H 1.09004 * 110.48772 * 139.55693 * 26 25 23 47 47 H 1.08992 * 109.87624 * 242.60492 * 27 26 25 48 48 H 1.09001 * 109.87947 * 121.45075 * 27 26 25 49 49 H 1.08999 * 109.47241 * 62.44038 * 29 17 2 50 50 H 1.09001 * 109.54461 * 302.31093 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.6539 -1.7461 -1.1214 6 7 1.7909 -0.1948 -2.4520 7 6 1.1439 1.1133 -2.5802 8 6 2.1755 -0.9425 -3.6517 9 6 1.0345 -1.8299 -4.0779 10 1 0.1147 -1.8361 -3.5119 11 6 1.1649 -2.6340 -5.1903 12 7 2.2851 -2.6269 -5.8792 13 14 -0.2498 -3.7335 -5.7189 14 1 -1.4409 -2.8986 -6.0174 15 1 0.1406 -4.4924 -6.9343 16 1 -0.5732 -4.6842 -4.6250 17 7 2.0196 -0.6925 1.1995 18 6 1.5279 -2.0772 1.2460 19 6 2.1087 -2.7782 2.4770 20 8 1.7577 -2.0393 3.6501 21 6 2.2215 -0.6864 3.6386 22 1 3.3101 -0.6753 3.5854 23 6 1.7651 0.0210 4.9162 24 1 2.2020 1.0174 4.9814 25 6 2.1323 -0.8190 6.1660 26 6 1.0941 -0.3269 7.2038 27 6 -0.0352 0.2808 6.3494 28 8 0.3241 0.0932 4.9702 29 6 1.6427 0.0363 2.4194 30 1 -0.3633 -1.0096 0.1922 31 1 -0.3633 0.6712 0.7781 32 1 -0.3633 0.3382 -0.9705 33 1 1.9042 1.8837 -2.7084 34 1 0.4823 1.1080 -3.4464 35 1 0.5637 1.3213 -1.6811 36 1 2.4122 -0.2443 -4.4547 37 1 3.0502 -1.5550 -3.4332 38 1 2.3769 -3.1929 -6.6616 39 1 1.8408 -2.6050 0.3451 40 1 0.4396 -2.0758 1.3076 41 1 3.1940 -2.8279 2.3892 42 1 1.7020 -3.7871 2.5470 43 1 3.1473 -0.6000 6.4974 44 1 2.0106 -1.8841 5.9690 45 1 1.5327 0.4318 7.8519 46 1 0.7185 -1.1631 7.7936 47 1 -0.1321 1.3447 6.5657 48 1 -0.9751 -0.2294 6.5602 49 1 0.5563 0.0729 2.4998 50 1 2.0393 1.0507 2.3754 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152223758.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:48 Heat of formation + Delta-G solvation = -121.425069 kcal Electronic energy + Delta-G solvation = -29714.869812 eV Core-core repulsion = 25742.179786 eV Total energy + Delta-G solvation = -3972.690026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.64416 -40.61446 -39.40722 -37.07608 -36.57198 -34.77967 -33.25093 -32.87034 -32.14737 -29.74385 -29.35376 -27.75105 -27.14239 -25.71067 -25.04112 -24.00654 -22.60406 -21.99122 -20.98469 -19.95246 -18.68085 -18.17926 -17.83738 -17.53205 -17.07037 -16.69289 -16.59641 -16.38888 -16.23072 -15.84263 -15.58497 -15.45713 -15.24632 -14.67186 -14.51547 -14.45618 -14.18309 -14.07335 -13.58436 -13.50900 -13.42998 -13.26116 -13.00788 -12.83975 -12.62568 -12.59014 -12.45995 -12.31398 -12.27284 -12.12184 -12.00134 -11.97356 -11.68978 -11.51780 -11.36930 -10.76656 -10.64957 -10.55932 -10.20829 -9.41213 -9.29282 -8.22857 -6.38042 1.35396 1.39392 1.46684 1.81143 2.19602 2.39044 2.68694 2.87490 2.95756 3.06430 3.55447 3.67899 3.79137 3.94179 4.01492 4.02230 4.07859 4.14948 4.19265 4.22857 4.30513 4.35118 4.35265 4.46026 4.59277 4.60894 4.64981 4.69274 4.72788 4.82714 4.86084 4.88924 4.92574 4.96047 5.00944 5.01873 5.09038 5.16260 5.20926 5.23899 5.33309 5.56100 5.80405 5.87617 5.98524 6.01350 6.05670 6.23097 6.69679 6.79957 7.27907 7.49987 8.83885 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.023586 B = 0.002767 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.843489 B =10115.279758 C =10382.205743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.076 3.924 3 H 0.131 0.869 4 C 0.504 3.496 5 O -0.577 6.577 6 N -0.609 5.609 7 C 0.065 3.935 8 C 0.261 3.739 9 C -0.542 4.542 10 H 0.053 0.947 11 C 0.008 3.992 12 N -0.928 5.928 13 Si 0.966 3.034 14 H -0.260 1.260 15 H -0.278 1.278 16 H -0.278 1.278 17 N -0.524 5.524 18 C 0.005 3.995 19 C 0.075 3.925 20 O -0.383 6.383 21 C 0.097 3.903 22 H 0.082 0.918 23 C 0.084 3.916 24 H 0.106 0.894 25 C -0.146 4.146 26 C -0.150 4.150 27 C 0.040 3.960 28 O -0.393 6.393 29 C 0.029 3.971 30 H 0.046 0.954 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.022 0.978 37 H -0.002 1.002 38 H 0.267 0.733 39 H 0.086 0.914 40 H 0.034 0.966 41 H 0.055 0.945 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.069 0.931 45 H 0.093 0.907 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.080 0.920 49 H 0.048 0.952 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.599 10.911 25.350 27.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.035 4.035 3 H 0.149 0.851 4 C 0.292 3.708 5 O -0.457 6.457 6 N -0.340 5.340 7 C -0.077 4.077 8 C 0.139 3.861 9 C -0.580 4.580 10 H 0.071 0.929 11 C -0.191 4.191 12 N -0.568 5.568 13 Si 0.790 3.210 14 H -0.185 1.185 15 H -0.203 1.203 16 H -0.203 1.203 17 N -0.249 5.249 18 C -0.123 4.123 19 C -0.002 4.002 20 O -0.302 6.302 21 C 0.039 3.961 22 H 0.100 0.900 23 C 0.027 3.973 24 H 0.124 0.876 25 C -0.184 4.184 26 C -0.187 4.187 27 C -0.037 4.037 28 O -0.313 6.313 29 C -0.098 4.098 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.122 0.878 36 H 0.040 0.960 37 H 0.016 0.984 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.124 0.876 43 H 0.114 0.886 44 H 0.088 0.912 45 H 0.112 0.888 46 H 0.097 0.903 47 H 0.089 0.911 48 H 0.098 0.902 49 H 0.067 0.933 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.923 10.218 25.178 27.329 hybrid contribution -1.019 -0.846 -1.045 1.686 sum -3.941 9.373 24.134 26.188 Atomic orbital electron populations 1.22544 0.94101 1.02908 1.04616 1.21610 0.95055 0.99103 0.87780 0.85143 1.21021 0.79440 0.85153 0.85174 1.90528 1.42449 1.26262 1.86471 1.48097 1.59155 1.20756 1.06007 1.22224 0.98284 0.82853 1.04340 1.18726 0.94800 0.90765 0.81782 1.21649 1.00574 1.24567 1.11234 0.92871 1.25850 0.98706 0.98206 0.96324 1.70050 1.27153 1.40672 1.18882 0.85496 0.79295 0.78689 0.77507 1.18474 1.20345 1.20329 1.62126 1.59314 1.02061 1.01375 1.23040 0.97367 0.90661 1.01191 1.22576 0.99459 0.95186 0.83004 1.87970 1.78954 1.23435 1.39836 1.22293 0.98185 0.82081 0.93495 0.89996 1.23315 0.81928 0.98608 0.93476 0.87626 1.23071 1.00582 1.00823 0.93891 1.22923 0.95660 1.01832 0.98296 1.23295 0.98812 1.00765 0.80804 1.88916 1.21428 1.94399 1.26526 1.22774 0.99825 0.98648 0.88553 0.93490 0.88856 0.89858 0.91309 0.91571 0.87814 0.96009 0.98367 0.92396 0.89582 0.94807 0.92666 0.87596 0.88611 0.91193 0.88827 0.90253 0.91079 0.90151 0.93336 0.87830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.84 7.93 71.98 0.57 -4.26 16 2 C 0.08 2.30 1.94 44.17 0.09 2.38 16 3 H 0.13 3.14 7.73 -2.39 -0.02 3.12 16 4 C 0.50 21.37 6.78 87.66 0.59 21.96 16 5 O -0.58 -30.02 13.25 -3.04 -0.04 -30.06 16 6 N -0.61 -26.14 2.85 -851.14 -2.43 -28.57 16 7 C 0.06 1.95 9.71 127.77 1.24 3.19 16 8 C 0.26 14.27 5.23 85.63 0.45 14.72 16 9 C -0.54 -31.38 9.39 25.60 0.24 -31.14 16 10 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 11 C 0.01 0.48 5.46 84.65 0.46 0.94 16 12 N -0.93 -56.65 13.29 21.45 0.28 -56.37 16 13 Si 0.97 45.17 29.54 68.60 2.03 47.19 16 14 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 15 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 16 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 17 N -0.52 -15.91 4.54 -874.36 -3.97 -19.88 16 18 C 0.01 0.18 4.79 86.32 0.41 0.59 16 19 C 0.07 2.13 7.01 72.02 0.50 2.63 16 20 O -0.38 -10.29 9.25 -145.79 -1.35 -11.64 16 21 C 0.10 2.15 2.82 30.63 0.09 2.24 16 22 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 23 C 0.08 1.46 3.25 31.28 0.10 1.56 16 24 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 25 C -0.15 -2.14 6.52 31.90 0.21 -1.93 16 26 C -0.15 -1.70 7.01 31.59 0.22 -1.48 16 27 C 0.04 0.57 7.70 72.36 0.56 1.13 16 28 O -0.39 -8.35 10.39 -145.79 -1.52 -9.86 16 29 C 0.03 0.69 4.48 86.31 0.39 1.08 16 30 H 0.05 1.44 5.91 -2.39 -0.01 1.43 16 31 H 0.09 1.93 7.14 -2.39 -0.02 1.91 16 32 H 0.08 2.15 5.40 -2.39 -0.01 2.14 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.07 2.08 8.12 -2.39 -0.02 2.06 16 35 H 0.10 2.38 4.12 -2.39 -0.01 2.37 16 36 H 0.02 1.21 8.07 -2.38 -0.02 1.19 16 37 H 0.00 -0.11 7.35 -2.39 -0.02 -0.13 16 38 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 39 H 0.09 3.64 5.23 -2.39 -0.01 3.62 16 40 H 0.03 1.15 6.20 -2.38 -0.01 1.13 16 41 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 43 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.07 1.34 7.07 -2.39 -0.02 1.32 16 45 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.05 1.23 6.21 -2.39 -0.01 1.21 16 50 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -76.24 378.65 0.06 -76.19 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.93 Total: 19.39 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 6.12 Total: 13.60 kcal Atomic # 7 Polarization: -98.70 SS G_CDS: -6.11 Total: -104.81 kcal Atomic # 8 Polarization: -48.66 SS G_CDS: -2.90 Total: -51.56 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -76.24 0.06 -76.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152223758.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.240 kcal (2) G-P(sol) polarization free energy of solvation -76.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds