Wall clock time and date at job start Fri Apr 10 2020 18:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47218 * 2 1 4 4 C 1.46505 * 119.99762 * 270.27621 * 3 2 1 5 5 C 1.50707 * 109.46605 * 269.71936 * 4 3 2 6 6 H 1.07991 * 120.00042 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99625 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00165 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 120.00198 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.46971 * 89.99502 * 9 7 5 11 11 H 1.48497 * 109.46915 * 209.99854 * 9 7 5 12 12 H 1.48498 * 109.47072 * 329.99613 * 9 7 5 13 13 C 1.34777 * 120.00293 * 89.99217 * 3 2 1 14 14 O 1.21276 * 120.00018 * 180.02562 * 13 3 2 15 15 C 1.50698 * 119.99790 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.46830 * 173.78603 * 15 13 3 17 17 C 1.47017 * 111.00169 * 293.64610 * 16 15 13 18 18 C 1.53093 * 109.25812 * 177.60902 * 17 16 15 19 19 O 1.43013 * 109.25870 * 56.84912 * 18 17 16 20 20 C 1.43011 * 113.74235 * 301.33076 * 19 18 17 21 21 H 1.09006 * 109.50491 * 298.69399 * 20 19 18 22 22 C 1.53000 * 109.51304 * 178.60529 * 20 19 18 23 23 H 1.08999 * 109.82654 * 175.69771 * 22 20 19 24 24 C 1.54388 * 109.82807 * 54.81265 * 22 20 19 25 25 C 1.55459 * 102.18361 * 219.18646 * 24 22 20 26 26 C 1.54947 * 100.99067 * 34.03727 * 25 24 22 27 27 O 1.43239 * 109.82740 * 296.58797 * 22 20 19 28 28 C 1.47016 * 110.99958 * 170.01191 * 16 15 13 29 29 H 1.08999 * 109.47461 * 300.00598 * 1 2 3 30 30 H 1.09003 * 109.46811 * 60.00463 * 1 2 3 31 31 H 1.09002 * 109.47168 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47461 * 239.99402 * 2 1 3 33 33 H 1.09003 * 109.46811 * 119.99537 * 2 1 3 34 34 H 1.08998 * 109.47141 * 29.72077 * 4 3 2 35 35 H 1.09001 * 109.47223 * 149.72696 * 4 3 2 36 36 H 0.96996 * 120.00717 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.46948 * 293.78475 * 15 13 3 38 38 H 1.08995 * 109.47351 * 53.78644 * 15 13 3 39 39 H 1.08997 * 109.50605 * 297.54590 * 17 16 15 40 40 H 1.08997 * 109.50395 * 57.63237 * 17 16 15 41 41 H 1.08996 * 109.51031 * 176.78651 * 18 17 16 42 42 H 1.08998 * 109.50808 * 296.91930 * 18 17 16 43 43 H 1.08998 * 110.84616 * 337.32095 * 24 22 20 44 44 H 1.08997 * 110.84916 * 100.94438 * 24 22 20 45 45 H 1.08998 * 111.05530 * 276.12576 * 25 24 22 46 46 H 1.08994 * 111.17981 * 152.00761 * 25 24 22 47 47 H 1.08997 * 110.31104 * 204.69101 * 26 25 24 48 48 H 1.09006 * 110.39242 * 82.56113 * 26 25 24 49 49 H 1.08998 * 109.50805 * 302.33129 * 28 16 15 50 50 H 1.09002 * 109.50415 * 62.45901 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2567 2.0738 -1.2688 5 6 3.6801 1.8433 -1.7071 6 1 4.3407 1.2408 -1.1015 7 6 4.1384 2.4007 -2.8819 8 7 5.3804 2.1992 -3.2648 9 14 2.9954 3.4422 -3.9299 10 1 3.0938 4.8626 -3.5079 11 1 3.3857 3.3217 -5.3576 12 1 1.5980 2.9702 -3.7572 13 6 2.2428 2.0167 1.1672 14 8 2.6467 3.1602 1.1671 15 6 1.9920 1.3061 2.4723 16 7 2.4490 2.1497 3.5847 17 6 3.9100 2.3120 3.5572 18 6 4.3360 3.2438 4.6948 19 8 3.8737 2.7112 5.9390 20 6 2.4551 2.5406 6.0007 21 1 1.9667 3.5080 5.8827 22 6 2.0714 1.9362 7.3529 23 1 0.9864 1.8746 7.4358 24 6 2.6352 2.8084 8.4953 25 6 3.0939 1.7405 9.5277 26 6 3.5600 0.6010 8.5868 27 8 2.6437 0.6293 7.4808 28 6 2.0100 1.6018 4.8763 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 1.5758 1.6874 -2.0272 35 1 2.0857 3.1423 -1.1372 36 1 5.7030 2.5916 -4.0910 37 1 0.9253 1.1095 2.5798 38 1 2.5382 0.3630 2.4833 39 1 4.3866 1.3401 3.6849 40 1 4.2105 2.7421 2.6018 41 1 5.4229 3.3218 4.7137 42 1 3.9022 4.2314 4.5381 43 1 3.4816 3.4015 8.1490 44 1 1.8583 3.4473 8.9151 45 1 2.2616 1.4177 10.1532 46 1 3.9193 2.1099 10.1361 47 1 3.5048 -0.3593 9.0994 48 1 4.5768 0.7865 8.2404 49 1 0.9236 1.5140 4.8841 50 1 2.4563 0.6185 5.0251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152338979.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:51 Heat of formation + Delta-G solvation = -109.530624 kcal Electronic energy + Delta-G solvation = -29383.204689 eV Core-core repulsion = 25411.030445 eV Total energy + Delta-G solvation = -3972.174244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.36137 -39.35889 -38.33023 -35.67088 -35.02682 -32.71120 -32.43375 -32.09042 -30.37346 -29.49436 -28.56663 -27.30814 -24.86371 -24.05462 -22.97090 -22.32438 -21.91055 -21.14929 -20.15913 -18.30702 -17.30188 -16.92549 -16.83243 -16.42836 -16.11859 -15.61740 -15.39013 -15.23190 -14.93258 -14.35373 -14.28931 -13.98109 -13.89059 -13.56709 -13.45286 -13.25818 -13.09599 -12.88547 -12.50421 -12.22507 -12.03472 -11.99056 -11.80216 -11.63337 -11.47374 -11.43289 -11.27056 -11.11663 -11.01035 -10.93219 -10.68105 -10.51899 -10.44884 -10.13691 -9.72329 -9.61368 -9.53023 -8.91552 -8.58313 -8.17931 -7.68988 -6.08224 -4.06762 3.29537 3.35218 3.37204 3.37555 3.49983 3.61992 3.67584 4.10994 4.30794 4.40213 4.52134 4.61571 4.87014 4.89984 4.99725 5.07223 5.11236 5.17852 5.21715 5.25260 5.31175 5.32881 5.42456 5.46167 5.49624 5.51749 5.58457 5.59374 5.61249 5.62871 5.69112 5.75096 5.86715 5.93645 5.98602 6.09926 6.14614 6.18557 6.39935 6.69933 6.80812 6.92249 7.01555 7.05840 7.21872 7.38678 7.62369 8.29007 8.48099 8.94076 9.04274 9.52448 11.05199 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.022076 B = 0.002772 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.052538 B =10099.073778 C =10717.705881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.595 5.595 4 C 0.218 3.782 5 C -0.527 4.527 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.509 3.491 14 O -0.523 6.523 15 C 0.039 3.961 16 N -0.519 5.519 17 C 0.015 3.985 18 C 0.069 3.931 19 O -0.378 6.378 20 C 0.086 3.914 21 H 0.074 0.926 22 C 0.090 3.910 23 H 0.093 0.907 24 C -0.148 4.148 25 C -0.155 4.155 26 C 0.054 3.946 27 O -0.371 6.371 28 C 0.029 3.971 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.029 0.971 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.037 0.963 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.061 0.939 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.063 0.937 49 H 0.080 0.920 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.790 -3.601 23.134 25.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.328 5.328 4 C 0.097 3.903 5 C -0.565 4.565 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.295 3.705 14 O -0.399 6.399 15 C -0.092 4.092 16 N -0.244 5.244 17 C -0.112 4.112 18 C -0.008 4.008 19 O -0.297 6.297 20 C 0.027 3.973 21 H 0.092 0.908 22 C 0.032 3.968 23 H 0.110 0.890 24 C -0.186 4.186 25 C -0.193 4.193 26 C -0.022 4.022 27 O -0.290 6.290 28 C -0.099 4.099 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.116 0.884 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.125 0.875 41 H 0.115 0.885 42 H 0.079 0.921 43 H 0.109 0.891 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.100 0.900 47 H 0.098 0.902 48 H 0.081 0.919 49 H 0.098 0.902 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.568 -2.695 22.918 24.615 hybrid contribution -0.219 -0.169 -0.813 0.859 sum -8.787 -2.864 22.105 23.959 Atomic orbital electron populations 1.22231 0.96755 1.01553 1.02243 1.21447 0.93424 0.83963 1.03033 1.47955 1.64562 1.13266 1.06983 1.19626 0.97255 0.93346 0.80081 1.21322 0.95297 1.32864 1.07045 0.90878 1.24856 0.94999 0.95820 0.97350 1.69894 1.15255 1.45037 1.23506 0.86847 0.81509 0.81604 0.79709 1.19913 1.21116 1.19090 1.20137 0.78619 0.87057 0.84673 1.90642 1.44673 1.17767 1.86834 1.22056 1.01819 0.94778 0.90547 1.61861 1.12735 1.48597 1.01181 1.22905 0.87141 0.99313 1.01878 1.22637 0.99458 0.96354 0.82341 1.87929 1.21010 1.85129 1.35662 1.22501 0.82903 0.97932 0.93933 0.90825 1.22799 0.97622 0.83229 0.93195 0.88970 1.23135 1.02282 0.98358 0.94780 1.23262 1.01732 0.96081 0.98183 1.23330 0.93811 0.98633 0.86467 1.88430 1.59839 1.29480 1.51240 1.22664 1.00810 0.97515 0.88915 0.92990 0.92200 0.91999 0.89748 0.91562 0.95345 0.94617 0.92586 0.88433 0.92364 0.94512 0.87513 0.88474 0.92117 0.89148 0.90238 0.90685 0.90036 0.90159 0.91915 0.90150 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.11 1.65 5.95 -4.04 -0.02 1.62 16 3 N -0.59 -12.21 2.46 -175.06 -0.43 -12.64 16 4 C 0.22 5.33 4.23 -5.19 -0.02 5.31 16 5 C -0.53 -15.14 9.94 -34.44 -0.34 -15.48 16 6 H 0.07 2.31 8.06 -52.49 -0.42 1.88 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 9 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 10 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 13 C 0.51 10.42 7.24 -10.99 -0.08 10.34 16 14 O -0.52 -12.83 14.25 5.56 0.08 -12.75 16 15 C 0.04 0.61 4.18 -4.98 -0.02 0.59 16 16 N -0.52 -8.06 4.42 -235.76 -1.04 -9.11 16 17 C 0.02 0.25 5.30 -3.71 -0.02 0.23 16 18 C 0.07 0.95 7.01 37.21 0.26 1.21 16 19 O -0.38 -5.01 9.32 -40.71 -0.38 -5.39 16 20 C 0.09 1.00 2.70 -26.68 -0.07 0.93 16 21 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 22 C 0.09 0.87 3.41 -26.00 -0.09 0.78 16 23 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 24 C -0.15 -1.17 6.44 -24.70 -0.16 -1.33 16 25 C -0.15 -1.08 7.16 -24.40 -0.17 -1.25 16 26 C 0.05 0.48 7.78 38.19 0.30 0.78 16 27 O -0.37 -4.22 10.12 -40.71 -0.41 -4.63 16 28 C 0.03 0.37 4.80 -3.71 -0.02 0.35 16 29 H 0.05 0.62 7.41 -51.93 -0.39 0.24 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 33 H 0.07 0.89 6.27 -51.93 -0.33 0.56 16 34 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 35 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.10 1.28 7.31 -51.93 -0.38 0.90 16 38 H 0.06 0.85 7.04 -51.93 -0.37 0.49 16 39 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.11 2.08 6.10 -51.93 -0.32 1.76 16 41 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.09 0.83 7.04 -51.93 -0.37 0.46 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 50 H 0.05 0.71 7.51 -51.93 -0.39 0.32 16 LS Contribution 387.51 15.07 5.84 5.84 Total: -1.00 -34.52 387.51 -9.18 -43.69 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -8.76 Total: 0.64 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -0.18 Total: 4.32 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.70 Total: -48.75 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.71 Total: -22.77 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.52 -9.18 -43.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152338979.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.836 kcal (2) G-P(sol) polarization free energy of solvation -34.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds