Wall clock time and date at job start Fri Apr 10 2020 18:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47218 * 2 1 4 4 C 1.46505 * 119.99762 * 270.27621 * 3 2 1 5 5 C 1.50707 * 109.46605 * 269.71936 * 4 3 2 6 6 H 1.07991 * 120.00042 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99625 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00165 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 120.00198 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.46971 * 89.99502 * 9 7 5 11 11 H 1.48497 * 109.46915 * 209.99854 * 9 7 5 12 12 H 1.48498 * 109.47072 * 329.99613 * 9 7 5 13 13 C 1.34777 * 120.00293 * 89.99217 * 3 2 1 14 14 O 1.21276 * 120.00018 * 180.02562 * 13 3 2 15 15 C 1.50698 * 119.99790 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.46830 * 173.78603 * 15 13 3 17 17 C 1.47017 * 111.00169 * 293.64610 * 16 15 13 18 18 C 1.53093 * 109.25812 * 177.60902 * 17 16 15 19 19 O 1.43013 * 109.25870 * 56.84912 * 18 17 16 20 20 C 1.43011 * 113.74235 * 301.33076 * 19 18 17 21 21 H 1.09006 * 109.50491 * 298.69399 * 20 19 18 22 22 C 1.53000 * 109.51304 * 178.60529 * 20 19 18 23 23 H 1.08999 * 109.82654 * 175.69771 * 22 20 19 24 24 C 1.54388 * 109.82807 * 54.81265 * 22 20 19 25 25 C 1.55459 * 102.18361 * 219.18646 * 24 22 20 26 26 C 1.54947 * 100.99067 * 34.03727 * 25 24 22 27 27 O 1.43239 * 109.82740 * 296.58797 * 22 20 19 28 28 C 1.47016 * 110.99958 * 170.01191 * 16 15 13 29 29 H 1.08999 * 109.47461 * 300.00598 * 1 2 3 30 30 H 1.09003 * 109.46811 * 60.00463 * 1 2 3 31 31 H 1.09002 * 109.47168 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47461 * 239.99402 * 2 1 3 33 33 H 1.09003 * 109.46811 * 119.99537 * 2 1 3 34 34 H 1.08998 * 109.47141 * 29.72077 * 4 3 2 35 35 H 1.09001 * 109.47223 * 149.72696 * 4 3 2 36 36 H 0.96996 * 120.00717 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.46948 * 293.78475 * 15 13 3 38 38 H 1.08995 * 109.47351 * 53.78644 * 15 13 3 39 39 H 1.08997 * 109.50605 * 297.54590 * 17 16 15 40 40 H 1.08997 * 109.50395 * 57.63237 * 17 16 15 41 41 H 1.08996 * 109.51031 * 176.78651 * 18 17 16 42 42 H 1.08998 * 109.50808 * 296.91930 * 18 17 16 43 43 H 1.08998 * 110.84616 * 337.32095 * 24 22 20 44 44 H 1.08997 * 110.84916 * 100.94438 * 24 22 20 45 45 H 1.08998 * 111.05530 * 276.12576 * 25 24 22 46 46 H 1.08994 * 111.17981 * 152.00761 * 25 24 22 47 47 H 1.08997 * 110.31104 * 204.69101 * 26 25 24 48 48 H 1.09006 * 110.39242 * 82.56113 * 26 25 24 49 49 H 1.08998 * 109.50805 * 302.33129 * 28 16 15 50 50 H 1.09002 * 109.50415 * 62.45901 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2567 2.0738 -1.2688 5 6 3.6801 1.8433 -1.7071 6 1 4.3407 1.2408 -1.1015 7 6 4.1384 2.4007 -2.8819 8 7 5.3804 2.1992 -3.2648 9 14 2.9954 3.4422 -3.9299 10 1 3.0938 4.8626 -3.5079 11 1 3.3857 3.3217 -5.3576 12 1 1.5980 2.9702 -3.7572 13 6 2.2428 2.0167 1.1672 14 8 2.6467 3.1602 1.1671 15 6 1.9920 1.3061 2.4723 16 7 2.4490 2.1497 3.5847 17 6 3.9100 2.3120 3.5572 18 6 4.3360 3.2438 4.6948 19 8 3.8737 2.7112 5.9390 20 6 2.4551 2.5406 6.0007 21 1 1.9667 3.5080 5.8827 22 6 2.0714 1.9362 7.3529 23 1 0.9864 1.8746 7.4358 24 6 2.6352 2.8084 8.4953 25 6 3.0939 1.7405 9.5277 26 6 3.5600 0.6010 8.5868 27 8 2.6437 0.6293 7.4808 28 6 2.0100 1.6018 4.8763 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 1.5758 1.6874 -2.0272 35 1 2.0857 3.1423 -1.1372 36 1 5.7030 2.5916 -4.0910 37 1 0.9253 1.1095 2.5798 38 1 2.5382 0.3630 2.4833 39 1 4.3866 1.3401 3.6849 40 1 4.2105 2.7421 2.6018 41 1 5.4229 3.3218 4.7137 42 1 3.9022 4.2314 4.5381 43 1 3.4816 3.4015 8.1490 44 1 1.8583 3.4473 8.9151 45 1 2.2616 1.4177 10.1532 46 1 3.9193 2.1099 10.1361 47 1 3.5048 -0.3593 9.0994 48 1 4.5768 0.7865 8.2404 49 1 0.9236 1.5140 4.8841 50 1 2.4563 0.6185 5.0251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152338979.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:50 Heat of formation + Delta-G solvation = -134.799958 kcal Electronic energy + Delta-G solvation = -29384.300449 eV Core-core repulsion = 25411.030445 eV Total energy + Delta-G solvation = -3973.270004 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.41354 -40.64717 -39.39370 -37.11670 -36.40043 -34.85759 -33.26637 -32.84965 -31.97156 -30.78507 -29.69274 -28.79325 -26.13368 -25.07792 -24.41745 -23.83282 -22.74001 -22.05108 -21.19815 -19.85920 -19.11819 -18.19515 -18.04150 -17.63170 -17.17560 -16.91411 -16.64630 -16.40155 -16.13835 -15.86356 -15.52958 -15.32922 -15.01153 -14.71003 -14.69739 -14.47495 -14.25704 -14.01892 -13.89565 -13.73779 -13.43822 -13.22726 -13.03820 -12.75715 -12.59077 -12.53771 -12.43462 -12.40046 -12.14388 -12.03701 -11.99842 -11.88407 -11.75546 -11.63515 -11.47419 -10.88108 -10.84138 -10.44099 -10.40927 -9.42881 -9.39281 -8.35371 -6.40288 1.31130 1.35374 1.43747 1.79234 2.14162 2.29643 2.66998 2.83398 2.92935 2.99088 3.58317 3.68211 3.74241 3.91715 3.97499 4.04618 4.06233 4.10711 4.17591 4.27088 4.31366 4.32130 4.40114 4.42909 4.49762 4.56543 4.62949 4.63770 4.77901 4.79895 4.84910 4.87014 4.90943 4.96124 4.98249 4.99311 5.00866 5.01710 5.08508 5.36512 5.37831 5.45728 5.64175 5.74069 5.91582 6.08797 6.19206 6.23654 6.60661 6.72189 7.20747 7.45159 8.81710 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.022076 B = 0.002772 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.052538 B =10099.073778 C =10717.705881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.602 5.602 4 C 0.228 3.772 5 C -0.534 4.534 6 H 0.026 0.974 7 C 0.011 3.989 8 N -0.946 5.946 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.274 1.274 12 H -0.238 1.238 13 C 0.500 3.500 14 O -0.574 6.574 15 C 0.051 3.949 16 N -0.531 5.531 17 C 0.020 3.980 18 C 0.076 3.924 19 O -0.382 6.382 20 C 0.080 3.920 21 H 0.077 0.923 22 C 0.089 3.911 23 H 0.115 0.885 24 C -0.147 4.147 25 C -0.146 4.146 26 C 0.046 3.954 27 O -0.393 6.393 28 C 0.034 3.966 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.017 0.983 36 H 0.268 0.732 37 H 0.133 0.867 38 H 0.070 0.930 39 H 0.032 0.968 40 H 0.066 0.934 41 H 0.108 0.892 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.100 0.900 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.094 0.906 48 H 0.047 0.953 49 H 0.105 0.895 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.911 -4.183 24.838 27.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.025 4.025 3 N -0.334 5.334 4 C 0.105 3.895 5 C -0.572 4.572 6 H 0.044 0.956 7 C -0.187 4.187 8 N -0.586 5.586 9 Si 0.771 3.229 10 H -0.202 1.202 11 H -0.200 1.200 12 H -0.161 1.161 13 C 0.288 3.712 14 O -0.453 6.453 15 C -0.079 4.079 16 N -0.257 5.257 17 C -0.108 4.108 18 C -0.001 4.001 19 O -0.301 6.301 20 C 0.022 3.978 21 H 0.095 0.905 22 C 0.031 3.969 23 H 0.133 0.867 24 C -0.184 4.184 25 C -0.184 4.184 26 C -0.030 4.030 27 O -0.313 6.313 28 C -0.094 4.094 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.035 0.965 36 H 0.077 0.923 37 H 0.150 0.850 38 H 0.088 0.912 39 H 0.050 0.950 40 H 0.084 0.916 41 H 0.126 0.874 42 H 0.074 0.926 43 H 0.092 0.908 44 H 0.119 0.881 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.112 0.888 48 H 0.066 0.934 49 H 0.123 0.877 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.719 -3.333 24.652 27.499 hybrid contribution 0.840 -0.062 -1.284 1.535 sum -10.880 -3.395 23.368 25.999 Atomic orbital electron populations 1.22149 0.93698 1.03670 1.02210 1.21770 0.95846 0.81184 1.03675 1.48077 1.64539 1.15058 1.05773 1.19264 0.94733 0.92951 0.82530 1.21540 0.96990 1.32060 1.06624 0.95589 1.25853 0.96759 0.97181 0.98930 1.70048 1.17551 1.46593 1.24429 0.85710 0.80453 0.78987 0.77768 1.20217 1.19955 1.16144 1.21057 0.77289 0.86727 0.86136 1.90613 1.46806 1.20225 1.87699 1.22016 1.03989 0.94142 0.87793 1.61854 1.11973 1.49327 1.02504 1.22741 0.88104 0.99216 1.00739 1.22536 1.00174 0.95420 0.81969 1.87941 1.22350 1.85002 1.34817 1.22739 0.81905 0.98143 0.95046 0.90488 1.22950 0.98768 0.82911 0.92297 0.86750 1.23134 1.02304 0.98462 0.94513 1.23250 1.02588 0.94781 0.97752 1.23464 0.92807 1.00261 0.86491 1.88404 1.60262 1.30340 1.52292 1.22744 1.02108 0.97071 0.87439 0.91863 0.93390 0.88750 0.91025 0.89145 0.93440 0.96473 0.92274 0.84955 0.91206 0.95012 0.91582 0.87388 0.92593 0.90755 0.88119 0.89134 0.88973 0.88823 0.93431 0.87713 0.93828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 10.24 71.98 0.74 -2.76 16 2 C 0.10 2.89 5.95 86.38 0.51 3.41 16 3 N -0.60 -24.74 2.46 -826.14 -2.03 -26.77 16 4 C 0.23 11.27 4.23 85.63 0.36 11.63 16 5 C -0.53 -31.89 9.94 25.60 0.25 -31.63 16 6 H 0.03 1.74 8.06 -2.92 -0.02 1.71 16 7 C 0.01 0.64 5.47 84.65 0.46 1.10 16 8 N -0.95 -60.58 13.96 21.45 0.30 -60.28 16 9 Si 0.95 45.11 27.47 68.60 1.88 47.00 16 10 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.24 -10.18 6.54 99.48 0.65 -9.53 16 13 C 0.50 20.66 7.24 87.66 0.64 21.29 16 14 O -0.57 -29.26 14.25 -3.02 -0.04 -29.31 16 15 C 0.05 1.52 4.18 85.56 0.36 1.88 16 16 N -0.53 -16.19 4.42 -899.81 -3.98 -20.17 16 17 C 0.02 0.68 5.30 86.31 0.46 1.14 16 18 C 0.08 2.14 7.01 72.01 0.50 2.64 16 19 O -0.38 -9.95 9.32 -143.74 -1.34 -11.29 16 20 C 0.08 1.74 2.70 30.63 0.08 1.83 16 21 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 22 C 0.09 1.50 3.41 31.07 0.11 1.61 16 23 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 24 C -0.15 -1.98 6.44 31.91 0.21 -1.77 16 25 C -0.15 -1.66 7.16 32.11 0.23 -1.43 16 26 C 0.05 0.74 7.78 72.65 0.57 1.31 16 27 O -0.39 -8.24 10.12 -143.74 -1.45 -9.69 16 28 C 0.03 0.79 4.80 86.31 0.41 1.21 16 29 H 0.06 1.26 7.41 -2.39 -0.02 1.24 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 33 H 0.09 2.23 6.27 -2.39 -0.01 2.21 16 34 H 0.05 2.17 7.13 -2.39 -0.02 2.15 16 35 H 0.02 0.92 6.85 -2.39 -0.02 0.90 16 36 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 37 H 0.13 3.01 7.31 -2.39 -0.02 2.99 16 38 H 0.07 1.94 7.04 -2.39 -0.02 1.92 16 39 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 2.77 6.10 -2.39 -0.01 2.75 16 41 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 42 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.07 1.26 7.04 -2.39 -0.02 1.24 16 44 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 49 H 0.10 1.95 8.09 -2.39 -0.02 1.93 16 50 H 0.04 1.12 7.51 -2.39 -0.02 1.10 16 Total: -1.00 -79.80 387.51 0.08 -79.73 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.85 Total: 19.35 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 5.89 Total: 11.44 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -5.71 Total: -107.22 kcal Atomic # 8 Polarization: -47.46 SS G_CDS: -2.84 Total: -50.30 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.88 Total: 47.00 kcal Total: -79.80 0.08 -79.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152338979.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.074 kcal (2) G-P(sol) polarization free energy of solvation -79.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds