Wall clock time and date at job start Fri Apr 10 2020 18:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 116.99967 * 2 1 4 4 O 1.20823 * 119.99831 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99902 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.52106 * 300.12094 * 5 3 2 7 7 C 1.53114 * 109.52443 * 60.31496 * 5 3 2 8 8 C 1.53040 * 109.27939 * 177.56040 * 7 5 3 9 9 N 1.46848 * 109.52101 * 300.82243 * 8 7 5 10 10 C 1.46895 * 110.99990 * 185.84256 * 9 8 7 11 11 C 1.52995 * 109.47704 * 66.03989 * 10 9 8 12 12 C 1.50698 * 109.47467 * 180.02562 * 11 10 9 13 13 O 1.21284 * 120.00044 * 359.97438 * 12 11 10 14 14 N 1.34782 * 120.00120 * 180.02562 * 12 11 10 15 15 C 1.46496 * 120.00028 * 359.97438 * 14 12 11 16 16 C 1.46494 * 120.00046 * 179.97438 * 14 12 11 17 17 C 1.50703 * 109.47455 * 89.99485 * 16 14 12 18 18 H 1.07998 * 119.99544 * 0.02562 * 17 16 14 19 19 C 1.37871 * 120.00334 * 179.97438 * 17 16 14 20 20 N 1.31514 * 119.99824 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00294 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46764 * 59.99907 * 21 19 17 23 23 H 1.48494 * 109.47286 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.46953 * 300.00302 * 21 19 17 25 25 C 1.46845 * 111.23573 * 61.71726 * 9 8 7 26 26 C 1.53028 * 109.52451 * 298.32086 * 25 9 8 27 27 H 1.09000 * 109.50649 * 299.15393 * 26 25 9 28 28 C 1.53006 * 109.50439 * 179.07875 * 26 25 9 29 29 H 1.08997 * 109.47106 * 300.00202 * 1 2 3 30 30 H 1.09003 * 109.46912 * 60.00168 * 1 2 3 31 31 H 1.08997 * 109.46949 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.50534 * 297.49833 * 7 5 3 33 33 H 1.09004 * 109.50434 * 57.57687 * 7 5 3 34 34 H 1.08998 * 109.46233 * 60.82981 * 8 7 5 35 35 H 1.09001 * 109.46504 * 180.81448 * 8 7 5 36 36 H 1.08997 * 109.47317 * 186.04720 * 10 9 8 37 37 H 1.09003 * 109.46722 * 306.03919 * 10 9 8 38 38 H 1.09002 * 109.47171 * 300.00253 * 11 10 9 39 39 H 1.09003 * 109.47089 * 60.00154 * 11 10 9 40 40 H 1.08999 * 109.47285 * 90.00126 * 15 14 12 41 41 H 1.08995 * 109.47365 * 210.00249 * 15 14 12 42 42 H 1.09003 * 109.47355 * 330.00634 * 15 14 12 43 43 H 1.08995 * 109.47359 * 209.99730 * 16 14 12 44 44 H 1.08999 * 109.47173 * 329.99535 * 16 14 12 45 45 H 0.97006 * 120.00077 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.49605 * 178.27756 * 25 9 8 47 47 H 1.08996 * 109.42586 * 58.31684 * 25 9 8 48 48 H 1.09001 * 109.46998 * 300.07486 * 28 26 25 49 49 H 1.09000 * 109.47050 * 60.07778 * 28 26 25 50 50 H 1.09001 * 109.46801 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9574 0.7789 0.8878 7 6 4.1143 0.5882 -1.2546 8 6 5.6384 0.7246 -1.2804 9 7 6.0038 2.1469 -1.2800 10 6 7.4535 2.3179 -1.4439 11 6 7.8701 1.8354 -2.8347 12 6 9.3575 2.0103 -3.0025 13 8 10.0192 2.4756 -2.0989 14 7 9.9523 1.6507 -4.1573 15 6 9.1530 1.0891 -5.2491 16 6 11.3981 1.8212 -4.3207 17 6 12.1064 0.5733 -3.8602 18 1 11.5365 -0.2634 -3.4839 19 6 13.4818 0.4993 -3.9202 20 7 14.1757 1.5180 -4.3789 21 14 14.3598 -1.0479 -3.3501 22 1 13.9025 -2.2042 -4.1621 23 1 15.8252 -0.8754 -3.5168 24 1 14.0494 -1.2943 -1.9190 25 6 5.5290 2.8177 -0.0631 26 6 4.0018 2.7429 -0.0005 27 1 3.5768 3.2485 -0.8676 28 6 3.5091 3.4218 1.2790 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.8437 -0.4676 -1.2392 33 1 3.6911 1.0593 -2.1419 34 1 6.0612 0.2408 -0.3999 35 1 6.0304 0.2492 -2.1795 36 1 7.7100 3.3715 -1.3329 37 1 7.9762 1.7350 -0.6854 38 1 7.6138 0.7818 -2.9456 39 1 7.3475 2.4183 -3.5931 40 1 8.8011 1.8948 -5.8934 41 1 9.7654 0.4001 -5.8306 42 1 8.2977 0.5547 -4.8356 43 1 11.6263 2.0019 -5.3710 44 1 11.7334 2.6701 -3.7248 45 1 15.1435 1.4661 -4.4209 46 1 5.8412 3.8619 -0.0779 47 1 5.9529 2.3245 0.8116 48 1 3.9342 2.9157 2.1458 49 1 3.8205 4.4664 1.2792 50 1 2.4213 3.3678 1.3232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191815787.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:14 Heat of formation + Delta-G solvation = -125.861321 kcal Electronic energy + Delta-G solvation = -28326.152969 eV Core-core repulsion = 24353.270573 eV Total energy + Delta-G solvation = -3972.882396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.17011 -39.43839 -38.66937 -36.89545 -35.02019 -34.59554 -32.62413 -32.44595 -30.70684 -28.52682 -27.73092 -26.88718 -25.93935 -25.14205 -23.37596 -22.51376 -21.78651 -20.78875 -19.96797 -18.30063 -17.93431 -17.15149 -16.71197 -16.57234 -16.46277 -15.60058 -15.32833 -15.02625 -14.91364 -14.49689 -14.37820 -14.36576 -14.06081 -13.77611 -13.26116 -13.21636 -12.65880 -12.60162 -12.44558 -12.31117 -12.17112 -12.13687 -11.98195 -11.83289 -11.61676 -11.48322 -11.24654 -11.20858 -11.13060 -11.04731 -10.90519 -10.78767 -10.56596 -10.51554 -10.25959 -10.15341 -9.63531 -8.87365 -8.42905 -8.42542 -7.61959 -6.03539 -4.08412 1.86620 2.36003 3.31530 3.36018 3.37789 3.47976 3.59303 4.13542 4.15898 4.37630 4.42711 4.46423 4.71631 4.76067 4.79105 4.85572 5.05150 5.08954 5.13391 5.16979 5.22440 5.26117 5.28010 5.32795 5.37086 5.44971 5.51245 5.58464 5.62456 5.69451 5.76875 5.81692 5.88812 5.94382 5.96585 6.05844 6.10639 6.12893 6.21229 6.23639 6.95963 6.97322 7.08480 7.42059 7.45967 7.56004 7.92750 8.24484 8.44696 8.90886 9.12016 9.56517 11.04433 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.022957 B = 0.002154 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.385795 B =12996.354707 C =13278.078396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.467 3.533 4 O -0.502 6.502 5 C -0.077 4.077 6 H 0.106 0.894 7 C -0.106 4.106 8 C 0.051 3.949 9 N -0.542 5.542 10 C 0.073 3.927 11 C -0.135 4.135 12 C 0.504 3.496 13 O -0.546 6.546 14 N -0.604 5.604 15 C 0.084 3.916 16 C 0.245 3.755 17 C -0.526 4.526 18 H 0.056 0.944 19 C 0.060 3.940 20 N -0.895 5.895 21 Si 0.898 3.102 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 C 0.062 3.938 26 C -0.070 4.070 27 H 0.089 0.911 28 C -0.158 4.158 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.044 0.956 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.031 0.969 44 H 0.043 0.957 45 H 0.264 0.736 46 H 0.083 0.917 47 H 0.037 0.963 48 H 0.050 0.950 49 H 0.060 0.940 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.958 -2.315 6.817 27.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.310 3.690 4 O -0.389 6.389 5 C -0.097 4.097 6 H 0.124 0.876 7 C -0.144 4.144 8 C -0.077 4.077 9 N -0.267 5.267 10 C -0.054 4.054 11 C -0.176 4.176 12 C 0.290 3.710 13 O -0.424 6.424 14 N -0.336 5.336 15 C -0.060 4.060 16 C 0.125 3.875 17 C -0.565 4.565 18 H 0.074 0.926 19 C -0.142 4.142 20 N -0.534 5.534 21 Si 0.726 3.274 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.066 4.066 26 C -0.089 4.089 27 H 0.107 0.893 28 C -0.215 4.215 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.063 0.937 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.049 0.951 44 H 0.061 0.939 45 H 0.073 0.927 46 H 0.102 0.898 47 H 0.055 0.945 48 H 0.069 0.931 49 H 0.079 0.921 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -26.850 -1.492 6.830 27.745 hybrid contribution 0.720 -1.310 0.862 1.726 sum -26.130 -2.801 7.692 27.382 Atomic orbital electron populations 1.23265 0.76429 1.03697 1.02526 1.86526 1.23360 1.33658 1.84038 1.23842 0.92022 0.81209 0.71907 1.90626 1.67182 1.36158 1.44924 1.21273 0.86735 0.99614 1.02038 0.87628 1.21599 0.95792 1.00790 0.96238 1.22158 0.94497 0.89151 1.01887 1.61905 1.14715 1.12539 1.37506 1.21787 0.85204 1.02484 0.95958 1.21654 0.94213 1.02872 0.98826 1.20313 0.89099 0.78889 0.82684 1.90665 1.66163 1.45509 1.40075 1.48160 1.10789 1.61080 1.13545 1.21627 0.95576 0.98143 0.90640 1.19274 0.72907 0.97960 0.97317 1.21388 0.91594 1.00717 1.42761 0.92603 1.24945 0.97350 0.96653 0.95245 1.69926 1.06934 1.30319 1.46201 0.86557 0.78386 0.83104 0.79349 1.20267 1.21169 1.20216 1.22125 0.93651 1.00028 0.90754 1.21060 0.95145 0.92384 1.00333 0.89268 1.22002 1.02881 1.00644 0.96012 0.91975 0.91852 0.88110 0.90067 0.90369 0.94319 0.89582 0.89828 0.93729 0.89648 0.88831 0.93733 0.90896 0.92439 0.95060 0.93863 0.92671 0.89832 0.94486 0.93104 0.92127 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.07 10.50 -39.26 -0.41 -3.49 16 3 C 0.47 4.46 6.97 36.01 0.25 4.71 16 4 O -0.50 -5.88 13.58 -18.75 -0.25 -6.13 16 5 C -0.08 -0.65 2.20 -91.65 -0.20 -0.85 16 6 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 7 C -0.11 -0.85 5.31 -26.65 -0.14 -1.00 16 8 C 0.05 0.48 5.30 -3.83 -0.02 0.46 16 9 N -0.54 -5.95 4.65 -234.68 -1.09 -7.04 16 10 C 0.07 1.00 4.25 -3.83 -0.02 0.98 16 11 C -0.14 -1.93 4.19 -27.89 -0.12 -2.05 16 12 C 0.50 10.32 7.67 -10.98 -0.08 10.23 16 13 O -0.55 -13.60 15.56 5.55 0.09 -13.52 16 14 N -0.60 -12.79 2.86 -182.96 -0.52 -13.31 16 15 C 0.08 1.32 10.24 59.84 0.61 1.93 16 16 C 0.24 6.45 5.16 -5.20 -0.03 6.42 16 17 C -0.53 -14.97 9.39 -34.44 -0.32 -15.29 16 18 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 21 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.06 0.61 4.74 -3.84 -0.02 0.60 16 26 C -0.07 -0.64 2.02 -90.54 -0.18 -0.82 16 27 H 0.09 0.93 8.04 -51.93 -0.42 0.52 16 28 C -0.16 -1.36 8.91 37.16 0.33 -1.03 16 29 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 30 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.79 6.22 -51.93 -0.32 0.47 16 36 H 0.08 1.22 7.94 -51.93 -0.41 0.81 16 37 H 0.04 0.67 8.08 -51.93 -0.42 0.26 16 38 H 0.09 1.08 5.70 -51.93 -0.30 0.78 16 39 H 0.09 1.20 8.11 -51.93 -0.42 0.77 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 42 H 0.06 0.72 6.44 -51.93 -0.33 0.39 16 43 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 44 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.08 0.82 8.01 -51.93 -0.42 0.41 16 47 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.07 0.74 5.75 -51.93 -0.30 0.45 16 LS Contribution 397.18 15.07 5.99 5.99 Total: -1.00 -34.29 397.18 -8.22 -42.50 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -8.76 Total: -3.09 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 1.03 Total: 7.20 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: -0.88 Total: -46.34 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.58 Total: -23.14 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.29 -8.22 -42.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191815787.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.357 kcal (2) G-P(sol) polarization free energy of solvation -34.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds