Wall clock time and date at job start Fri Apr 10 2020 18:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47020 * 2 1 4 4 C 1.50698 * 109.47103 * 240.00339 * 2 1 3 5 5 O 1.21280 * 120.00119 * 266.39361 * 4 2 1 6 6 N 1.34784 * 119.99862 * 86.39371 * 4 2 1 7 7 C 1.46492 * 120.00243 * 359.97438 * 6 4 2 8 8 C 1.46506 * 119.99637 * 180.02562 * 6 4 2 9 9 C 1.50695 * 109.47007 * 270.00073 * 8 6 4 10 10 H 1.08008 * 120.00139 * 359.97438 * 9 8 6 11 11 C 1.37876 * 119.99936 * 180.02562 * 9 8 6 12 12 N 1.31513 * 120.00339 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 119.99988 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46937 * 269.99988 * 13 11 9 15 15 H 1.48504 * 109.46970 * 150.00139 * 13 11 9 16 16 H 1.48497 * 109.46883 * 29.99999 * 13 11 9 17 17 N 1.46893 * 109.47262 * 120.00287 * 2 1 3 18 18 C 1.47008 * 111.00416 * 49.35940 * 17 2 1 19 19 C 1.53094 * 109.26252 * 182.39168 * 18 17 2 20 20 O 1.43018 * 109.25975 * 303.15228 * 19 18 17 21 21 C 1.43010 * 113.73514 * 58.66579 * 20 19 18 22 22 H 1.09004 * 109.50317 * 61.27133 * 21 20 19 23 23 C 1.53007 * 109.54146 * 181.37251 * 21 20 19 24 24 H 1.08995 * 109.87306 * 183.80185 * 23 21 20 25 25 C 1.54105 * 109.87885 * 304.81128 * 23 21 20 26 26 C 1.54809 * 104.18857 * 121.44857 * 25 23 21 27 27 C 1.55001 * 102.09196 * 20.88004 * 26 25 23 28 28 O 1.43746 * 109.87262 * 62.63921 * 23 21 20 29 29 C 1.47012 * 110.99914 * 172.99618 * 17 2 1 30 30 H 1.08998 * 109.46569 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46690 * 299.99854 * 1 2 3 32 32 H 1.08997 * 109.47025 * 59.99409 * 1 2 3 33 33 H 1.08997 * 109.47291 * 270.00377 * 7 6 4 34 34 H 1.09005 * 109.47381 * 30.00463 * 7 6 4 35 35 H 1.09007 * 109.47491 * 149.99779 * 7 6 4 36 36 H 1.08999 * 109.47090 * 150.00243 * 8 6 4 37 37 H 1.08999 * 109.47417 * 29.99922 * 8 6 4 38 38 H 0.97006 * 119.99190 * 359.97438 * 12 11 9 39 39 H 1.09003 * 109.50823 * 302.33297 * 18 17 2 40 40 H 1.09006 * 109.50502 * 62.45701 * 18 17 2 41 41 H 1.08999 * 109.50942 * 183.21517 * 19 18 17 42 42 H 1.08996 * 109.54094 * 63.11034 * 19 18 17 43 43 H 1.08997 * 110.48232 * 240.13037 * 25 23 21 44 44 H 1.09001 * 110.48619 * 2.63787 * 25 23 21 45 45 H 1.08997 * 110.90300 * 139.07574 * 26 25 23 46 46 H 1.08996 * 110.90733 * 262.64908 * 26 25 23 47 47 H 1.08998 * 110.61828 * 81.47192 * 27 26 25 48 48 H 1.08991 * 110.61766 * 204.31456 * 27 26 25 49 49 H 1.08999 * 109.50756 * 297.54169 * 29 17 2 50 50 H 1.08998 * 109.51054 * 57.62986 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.2968 -1.8930 -1.1825 6 7 2.1878 -0.0313 -2.3844 7 6 1.8678 1.3971 -2.4425 8 6 2.6756 -0.7220 -3.5807 9 6 4.1799 -0.6457 -3.6265 10 1 4.7188 -0.1335 -2.8430 11 6 4.8683 -1.2288 -4.6691 12 7 4.2122 -1.8512 -5.6239 13 14 6.7331 -1.1336 -4.7263 14 1 7.1439 0.0873 -5.4651 15 1 7.2691 -2.3340 -5.4169 16 1 7.2685 -1.0783 -3.3423 17 7 2.0197 -0.6925 1.1993 18 6 1.3526 -1.9918 1.3669 19 6 1.8475 -2.6510 2.6570 20 8 3.2713 -2.7759 2.6068 21 6 3.9532 -1.5293 2.4448 22 1 3.7330 -0.8812 3.2931 23 6 5.4612 -1.7769 2.3691 24 1 5.9905 -0.8257 2.3133 25 6 5.9261 -2.5633 3.6101 26 6 6.5640 -3.8482 3.0281 27 6 6.8840 -3.4214 1.5728 28 8 5.7675 -2.5784 1.2158 29 6 3.4796 -0.8587 1.1525 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 0.8217 1.5241 -2.7208 34 1 2.0413 1.8484 -1.4655 35 1 2.5027 1.8818 -3.1843 36 1 2.2605 -0.2466 -4.4694 37 1 2.3656 -1.7665 -3.5491 38 1 3.2438 -1.9003 -5.5944 39 1 0.2744 -1.8426 1.4247 40 1 1.5868 -2.6334 0.5173 41 1 1.3987 -3.6393 2.7561 42 1 1.5660 -2.0361 3.5118 43 1 6.6651 -1.9903 4.1700 44 1 5.0757 -2.8111 4.2453 45 1 7.4754 -4.1082 3.5665 46 1 5.8552 -4.6761 3.0443 47 1 7.8171 -2.8593 1.5340 48 1 6.9347 -4.2925 0.9197 49 1 3.7478 -1.4822 0.2996 50 1 3.9542 0.1175 1.0533 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247393039.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:40 Heat of formation + Delta-G solvation = -106.591708 kcal Electronic energy + Delta-G solvation = -30725.111573 eV Core-core repulsion = 26753.064770 eV Total energy + Delta-G solvation = -3972.046803 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.48032 -39.38006 -38.03871 -35.68952 -34.78888 -32.87449 -32.22809 -31.90500 -30.84848 -28.68858 -27.50027 -26.11644 -25.78320 -24.10453 -23.41902 -22.50001 -21.62309 -20.79134 -20.21252 -18.43054 -17.03503 -16.71134 -16.69160 -16.53769 -15.93844 -15.57216 -15.17888 -15.04131 -14.55811 -14.39732 -14.05287 -13.84293 -13.75541 -13.60848 -13.47163 -13.24906 -12.56678 -12.41663 -12.24843 -12.10039 -11.99861 -11.87450 -11.65683 -11.58925 -11.30748 -11.22134 -11.13363 -10.93080 -10.79088 -10.71049 -10.64706 -10.53054 -10.28995 -10.08890 -9.61750 -9.49790 -9.37545 -9.07860 -8.35567 -7.78526 -7.60918 -6.35765 -4.07183 3.30037 3.43452 3.50979 3.65885 3.77988 3.88216 3.94622 3.97986 4.56349 4.66262 4.73916 4.91988 4.99534 5.00547 5.13040 5.15140 5.20889 5.24561 5.30437 5.37139 5.39812 5.48250 5.55908 5.58437 5.59362 5.68306 5.71411 5.73925 5.77331 5.82594 5.86262 5.89494 5.99049 6.03036 6.08919 6.13659 6.19209 6.39926 6.56369 6.78790 7.02490 7.07174 7.11361 7.14150 7.36398 7.40728 8.06329 8.28126 8.46323 8.80654 9.00327 9.62247 11.01617 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.009615 B = 0.005487 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.558946 B = 5101.486726 C = 7351.945484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.058 3.942 3 H 0.101 0.899 4 C 0.479 3.521 5 O -0.533 6.533 6 N -0.595 5.595 7 C 0.082 3.918 8 C 0.235 3.765 9 C -0.601 4.601 10 H 0.050 0.950 11 C 0.020 3.980 12 N -0.911 5.911 13 Si 1.072 2.928 14 H -0.288 1.288 15 H -0.283 1.283 16 H -0.288 1.288 17 N -0.510 5.510 18 C -0.007 4.007 19 C 0.069 3.931 20 O -0.369 6.369 21 C 0.105 3.895 22 H 0.069 0.931 23 C 0.082 3.918 24 H 0.078 0.922 25 C -0.144 4.144 26 C -0.149 4.149 27 C 0.045 3.955 28 O -0.351 6.351 29 C 0.009 3.991 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.019 0.981 37 H 0.032 0.968 38 H 0.267 0.733 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.049 0.951 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.056 0.944 48 H 0.092 0.908 49 H 0.088 0.912 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.815 3.712 19.286 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.054 4.054 3 H 0.119 0.881 4 C 0.265 3.735 5 O -0.411 6.411 6 N -0.327 5.327 7 C -0.062 4.062 8 C 0.115 3.885 9 C -0.640 4.640 10 H 0.069 0.931 11 C -0.184 4.184 12 N -0.547 5.547 13 Si 0.900 3.100 14 H -0.215 1.215 15 H -0.209 1.209 16 H -0.214 1.214 17 N -0.234 5.234 18 C -0.135 4.135 19 C -0.008 4.008 20 O -0.288 6.288 21 C 0.046 3.954 22 H 0.086 0.914 23 C 0.024 3.976 24 H 0.096 0.904 25 C -0.182 4.182 26 C -0.187 4.187 27 C -0.032 4.032 28 O -0.269 6.269 29 C -0.119 4.119 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.037 0.963 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.097 0.903 47 H 0.075 0.925 48 H 0.110 0.890 49 H 0.106 0.894 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.480 2.763 18.622 18.884 hybrid contribution -1.158 0.492 0.253 1.283 sum -2.638 3.255 18.876 19.335 Atomic orbital electron populations 1.21799 0.92461 1.02932 1.02558 1.21939 0.96971 0.98972 0.87511 0.88148 1.21459 0.79044 0.88011 0.85021 1.90620 1.51124 1.15692 1.83628 1.48102 1.63539 1.09217 1.11883 1.21701 0.99836 0.82601 1.02091 1.19329 0.95285 0.92882 0.81004 1.22229 0.91292 1.39381 1.11104 0.93140 1.25783 1.07053 0.93084 0.92463 1.70780 1.09984 1.40324 1.33628 0.83506 0.74240 0.76589 0.75663 1.21494 1.20865 1.21359 1.62798 1.05427 1.20766 1.34415 1.23139 0.98897 0.91486 0.99957 1.22591 0.81408 1.00556 0.96225 1.88007 1.17902 1.29130 1.93732 1.22206 0.90861 0.85792 0.96521 0.91356 1.22787 0.93314 0.95211 0.86308 0.90382 1.22872 1.01106 0.96389 0.97846 1.23074 1.00894 0.98389 0.96347 1.23529 0.89876 0.94543 0.95230 1.89102 1.49965 1.54414 1.33439 1.22902 0.87721 1.01389 0.99901 0.91782 0.91017 0.91708 0.93640 0.92159 0.90805 0.96273 0.95014 0.92296 0.90181 0.89644 0.88919 0.93274 0.91139 0.89844 0.90766 0.90314 0.92535 0.89027 0.89428 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.57 37.16 0.32 -1.45 16 2 C 0.06 0.92 2.32 -68.87 -0.16 0.76 16 3 H 0.10 1.44 6.00 -51.93 -0.31 1.13 16 4 C 0.48 10.14 5.88 -10.98 -0.06 10.07 16 5 O -0.53 -13.54 11.87 5.56 0.07 -13.48 16 6 N -0.60 -12.94 2.86 -182.96 -0.52 -13.46 16 7 C 0.08 1.33 10.08 59.84 0.60 1.93 16 8 C 0.24 6.28 4.47 -5.19 -0.02 6.26 16 9 C -0.60 -17.68 9.39 -34.44 -0.32 -18.00 16 10 H 0.05 1.51 7.81 -52.48 -0.41 1.10 16 11 C 0.02 0.60 5.46 -17.82 -0.10 0.50 16 12 N -0.91 -28.42 13.65 55.43 0.76 -27.66 16 13 Si 1.07 26.48 29.90 -169.99 -5.08 21.40 16 14 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 N -0.51 -8.04 4.81 -227.73 -1.09 -9.13 16 18 C -0.01 -0.11 4.76 -3.72 -0.02 -0.13 16 19 C 0.07 0.94 7.01 37.21 0.26 1.20 16 20 O -0.37 -5.87 9.56 -41.07 -0.39 -6.27 16 21 C 0.10 1.55 2.57 -26.68 -0.07 1.49 16 22 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 23 C 0.08 1.17 3.31 -26.15 -0.09 1.09 16 24 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 25 C -0.14 -1.62 6.38 -25.20 -0.16 -1.78 16 26 C -0.15 -1.68 7.15 -24.72 -0.18 -1.86 16 27 C 0.05 0.62 7.72 38.21 0.29 0.92 16 28 O -0.35 -6.36 10.32 -41.07 -0.42 -6.78 16 29 C 0.01 0.15 4.31 -3.71 -0.02 0.14 16 30 H 0.06 0.86 6.26 -51.93 -0.33 0.53 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.77 7.96 -51.93 -0.41 0.35 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.81 5.83 -51.93 -0.30 0.51 16 35 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 36 H 0.02 0.51 7.94 -51.93 -0.41 0.10 16 37 H 0.03 0.95 7.29 -51.93 -0.38 0.57 16 38 H 0.27 8.28 7.22 -40.82 -0.29 7.98 16 39 H 0.08 1.06 6.05 -51.93 -0.31 0.74 16 40 H 0.09 1.69 5.59 -51.93 -0.29 1.40 16 41 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.94 7.23 -51.93 -0.38 0.56 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 49 H 0.09 2.00 5.27 -51.93 -0.27 1.73 16 50 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 379.90 15.07 5.73 5.73 Total: -1.00 -36.05 379.90 -9.08 -45.13 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -8.39 Total: 3.41 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 0.28 Total: 1.12 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.86 Total: -50.26 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.75 Total: -26.53 kcal Atomic # 14 Polarization: 26.48 SS G_CDS: -5.08 Total: 21.40 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.05 -9.08 -45.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247393039.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.462 kcal (2) G-P(sol) polarization free energy of solvation -36.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds