Wall clock time and date at job start Fri Apr 10 2020 18:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34239 * 116.99525 * 2 1 4 4 O 1.20822 * 119.99903 * 359.97438 * 3 2 1 5 5 C 1.50693 * 119.99704 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.52750 * 59.87133 * 5 3 2 7 7 C 1.53127 * 109.52304 * 299.67826 * 5 3 2 8 8 C 1.53038 * 109.27941 * 182.44437 * 7 5 3 9 9 N 1.46830 * 109.51757 * 59.17550 * 8 7 5 10 10 C 1.46901 * 110.98168 * 174.15669 * 9 8 7 11 11 C 1.53000 * 109.47158 * 294.21498 * 10 9 8 12 12 C 1.50699 * 109.47018 * 180.02562 * 11 10 9 13 13 O 1.21275 * 120.00040 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99835 * 180.02562 * 12 11 10 15 15 C 1.46500 * 120.00261 * 359.97438 * 14 12 11 16 16 C 1.46502 * 119.99902 * 179.97438 * 14 12 11 17 17 C 1.50702 * 109.47150 * 89.99711 * 16 14 12 18 18 H 1.07997 * 120.00411 * 359.97438 * 17 16 14 19 19 C 1.37873 * 119.99727 * 180.02562 * 17 16 14 20 20 N 1.31508 * 120.00463 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99849 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47286 * 89.99589 * 21 19 17 23 23 H 1.48502 * 109.46863 * 209.99676 * 21 19 17 24 24 H 1.48504 * 109.46689 * 329.99388 * 21 19 17 25 25 C 1.46847 * 111.21086 * 298.25173 * 9 8 7 26 26 C 1.53044 * 109.51335 * 61.74856 * 25 9 8 27 27 H 1.09001 * 109.49858 * 60.76701 * 26 25 9 28 28 C 1.53001 * 109.49819 * 180.84571 * 26 25 9 29 29 H 1.08999 * 109.47335 * 60.00917 * 1 2 3 30 30 H 1.09000 * 109.46809 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47516 * 300.00090 * 1 2 3 32 32 H 1.08997 * 109.50037 * 302.38390 * 7 5 3 33 33 H 1.09000 * 109.49970 * 62.50050 * 7 5 3 34 34 H 1.08995 * 109.46433 * 179.19502 * 8 7 5 35 35 H 1.09004 * 109.46006 * 299.16206 * 8 7 5 36 36 H 1.09001 * 109.46985 * 54.21857 * 10 9 8 37 37 H 1.09002 * 109.46593 * 174.21847 * 10 9 8 38 38 H 1.09002 * 109.46999 * 300.00307 * 11 10 9 39 39 H 1.08998 * 109.46977 * 59.99901 * 11 10 9 40 40 H 1.09005 * 109.46721 * 90.00417 * 15 14 12 41 41 H 1.08995 * 109.47287 * 210.00421 * 15 14 12 42 42 H 1.08997 * 109.47013 * 330.00960 * 15 14 12 43 43 H 1.09003 * 109.47278 * 209.99283 * 16 14 12 44 44 H 1.08998 * 109.47237 * 329.99754 * 16 14 12 45 45 H 0.97005 * 120.00416 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.46448 * 301.73578 * 25 9 8 47 47 H 1.08994 * 109.45958 * 181.75943 * 25 9 8 48 48 H 1.09000 * 109.47699 * 59.99811 * 28 26 25 49 49 H 1.09008 * 109.46665 * 180.02562 * 28 26 25 50 50 H 1.09001 * 109.47042 * 299.99618 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9566 0.7794 -0.8893 7 6 4.1151 0.5880 1.2530 8 6 5.6392 0.7245 1.2776 9 7 6.0044 2.1467 1.2774 10 6 7.4543 2.3175 1.4403 11 6 7.8726 1.8285 2.8284 12 6 9.3599 2.0043 2.9957 13 8 10.0204 2.4739 2.0935 14 7 9.9563 1.6386 4.1477 15 6 9.1586 1.0708 5.2375 16 6 11.4023 1.8090 4.3102 17 6 11.6857 3.1710 4.8896 18 1 10.8703 3.8427 5.1140 19 6 12.9859 3.5599 5.1323 20 7 13.9789 2.7423 4.8587 21 14 13.3372 5.2480 5.8512 22 1 13.3485 5.1621 7.3336 23 1 14.6599 5.7242 5.3728 24 1 12.2823 6.1995 5.4185 25 6 5.5289 2.8171 0.0604 26 6 4.0015 2.7430 -0.0005 27 1 3.5779 3.2483 0.8674 28 6 3.5079 3.4231 -1.2791 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.6931 1.0593 2.1406 33 1 3.8444 -0.4678 1.2373 34 1 6.0320 0.2488 2.1762 35 1 6.0614 0.2409 0.3967 36 1 7.9762 1.7384 0.6785 37 1 7.7101 3.3717 1.3341 38 1 7.3506 2.4076 3.5902 39 1 7.6167 0.7743 2.9346 40 1 9.1146 -0.0130 5.1289 41 1 9.6184 1.3218 6.1933 42 1 8.1494 1.4809 5.2008 43 1 11.7853 1.0413 4.9826 44 1 11.8902 1.7183 3.3397 45 1 14.8937 3.0158 5.0298 46 1 5.9517 2.3237 -0.8148 47 1 5.8417 3.8611 0.0752 48 1 3.9308 2.9167 -2.1467 49 1 2.4199 3.3705 -1.3217 50 1 3.8210 4.4672 -1.2794 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249037602.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:42 Heat of formation + Delta-G solvation = -125.732014 kcal Electronic energy + Delta-G solvation = -28296.430420 eV Core-core repulsion = 24323.553631 eV Total energy + Delta-G solvation = -3972.876789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.17473 -39.44427 -38.67321 -36.90091 -35.02275 -34.59768 -32.61873 -32.45020 -30.70795 -28.53196 -27.72933 -26.89205 -25.94007 -25.14169 -23.37407 -22.52097 -21.78995 -20.79346 -19.97413 -18.30215 -17.93889 -17.15297 -16.72532 -16.54515 -16.47847 -15.55165 -15.42268 -15.02236 -14.88307 -14.49796 -14.37659 -14.35180 -14.06775 -13.78037 -13.29142 -13.22826 -12.65635 -12.59679 -12.44773 -12.28765 -12.20896 -12.12829 -11.98486 -11.81070 -11.64119 -11.47382 -11.25484 -11.19513 -11.12731 -11.05442 -10.89890 -10.77899 -10.56076 -10.53217 -10.26754 -10.13892 -9.60983 -8.87340 -8.43117 -8.42330 -7.61957 -6.03030 -4.07667 1.86254 2.35438 3.31063 3.37420 3.40745 3.48095 3.59679 4.13618 4.15339 4.36825 4.42518 4.47206 4.71156 4.75747 4.78612 4.84683 5.04109 5.07955 5.12975 5.15966 5.22345 5.25932 5.28687 5.32926 5.36690 5.45482 5.49953 5.58242 5.60494 5.70860 5.76461 5.80983 5.84576 5.94072 5.96674 6.05964 6.12286 6.12934 6.21193 6.24993 6.95979 6.97082 7.08068 7.41680 7.45796 7.56354 7.93545 8.25122 8.44628 8.91970 9.12208 9.57448 11.04988 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.026329 B = 0.002112 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.215831 B =13254.972852 C =13711.025580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.467 3.533 4 O -0.501 6.501 5 C -0.077 4.077 6 H 0.106 0.894 7 C -0.107 4.107 8 C 0.051 3.949 9 N -0.542 5.542 10 C 0.073 3.927 11 C -0.135 4.135 12 C 0.504 3.496 13 O -0.546 6.546 14 N -0.604 5.604 15 C 0.084 3.916 16 C 0.244 3.756 17 C -0.525 4.525 18 H 0.057 0.943 19 C 0.060 3.940 20 N -0.895 5.895 21 Si 0.898 3.102 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.062 3.938 26 C -0.071 4.071 27 H 0.089 0.911 28 C -0.158 4.158 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.038 0.962 36 H 0.043 0.957 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.043 0.957 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.031 0.969 44 H 0.043 0.957 45 H 0.263 0.737 46 H 0.037 0.963 47 H 0.084 0.916 48 H 0.050 0.950 49 H 0.075 0.925 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.107 -7.741 -8.970 28.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.310 3.690 4 O -0.388 6.388 5 C -0.096 4.096 6 H 0.124 0.876 7 C -0.144 4.144 8 C -0.077 4.077 9 N -0.266 5.266 10 C -0.054 4.054 11 C -0.176 4.176 12 C 0.290 3.710 13 O -0.424 6.424 14 N -0.336 5.336 15 C -0.060 4.060 16 C 0.125 3.875 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.142 4.142 20 N -0.534 5.534 21 Si 0.726 3.274 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.066 4.066 26 C -0.090 4.090 27 H 0.108 0.892 28 C -0.215 4.215 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.049 0.951 44 H 0.061 0.939 45 H 0.073 0.927 46 H 0.055 0.945 47 H 0.102 0.898 48 H 0.069 0.931 49 H 0.094 0.906 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -25.990 -7.002 -9.025 28.389 hybrid contribution 0.433 0.523 -0.121 0.690 sum -25.557 -6.478 -9.146 27.907 Atomic orbital electron populations 1.23264 0.76432 1.03690 1.02540 1.86524 1.23361 1.33664 1.84064 1.23843 0.92025 0.81212 0.71933 1.90628 1.67172 1.36160 1.44870 1.21271 0.86731 0.99619 1.02005 0.87643 1.21602 0.95797 1.00756 0.96289 1.22152 0.94524 0.89207 1.01781 1.61910 1.14714 1.12477 1.37544 1.21793 0.85147 1.02621 0.95850 1.21657 0.94289 1.02725 0.98907 1.20307 0.89156 0.78763 0.82751 1.90662 1.66152 1.44737 1.40856 1.48163 1.11025 1.60940 1.13449 1.21635 0.95436 0.97067 0.91910 1.19280 0.73337 0.96668 0.98193 1.21438 0.92348 1.00687 1.41900 0.92464 1.24947 0.96027 0.97525 0.95719 1.69932 0.99259 1.36045 1.48213 0.86494 0.77723 0.84179 0.79012 1.20650 1.21105 1.19878 1.22131 0.93647 1.00093 0.90685 1.21065 0.95147 0.92372 1.00374 0.89247 1.22001 1.02881 1.00668 0.95985 0.91967 0.88113 0.91855 0.90350 0.90079 0.89600 0.94396 0.93850 0.89713 0.88660 0.89809 0.93864 0.90863 0.92279 0.95084 0.93888 0.92745 0.94496 0.89795 0.93121 0.90649 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.02 10.50 -39.28 -0.41 -3.44 16 3 C 0.47 4.43 6.97 36.00 0.25 4.68 16 4 O -0.50 -5.88 13.58 -18.75 -0.25 -6.14 16 5 C -0.08 -0.64 2.20 -91.65 -0.20 -0.84 16 6 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 7 C -0.11 -0.83 5.31 -26.65 -0.14 -0.98 16 8 C 0.05 0.46 5.29 -3.84 -0.02 0.44 16 9 N -0.54 -5.95 4.66 -234.68 -1.09 -7.04 16 10 C 0.07 1.00 4.25 -3.82 -0.02 0.99 16 11 C -0.14 -1.93 4.18 -27.88 -0.12 -2.05 16 12 C 0.50 10.31 7.67 -10.99 -0.08 10.23 16 13 O -0.55 -13.60 15.56 5.56 0.09 -13.51 16 14 N -0.60 -12.78 2.86 -182.95 -0.52 -13.30 16 15 C 0.08 1.31 10.24 59.85 0.61 1.92 16 16 C 0.24 6.45 5.16 -5.19 -0.03 6.42 16 17 C -0.52 -15.01 9.39 -34.44 -0.32 -15.33 16 18 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 21 Si 0.90 22.03 29.54 -169.99 -5.02 17.00 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.06 0.62 4.74 -3.83 -0.02 0.60 16 26 C -0.07 -0.65 2.02 -90.54 -0.18 -0.83 16 27 H 0.09 0.95 8.04 -51.93 -0.42 0.53 16 28 C -0.16 -1.37 8.91 37.16 0.33 -1.04 16 29 H 0.06 0.36 8.13 -51.93 -0.42 -0.07 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.75 6.21 -51.93 -0.32 0.42 16 35 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.04 0.63 8.08 -51.93 -0.42 0.21 16 37 H 0.08 1.28 7.94 -51.93 -0.41 0.87 16 38 H 0.10 1.28 7.40 -51.93 -0.38 0.90 16 39 H 0.08 1.00 6.39 -51.93 -0.33 0.67 16 40 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 42 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 43 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 44 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 0.85 8.01 -51.93 -0.42 0.44 16 48 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.07 0.75 5.75 -51.92 -0.30 0.45 16 50 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 397.16 15.07 5.99 5.99 Total: -1.00 -34.45 397.16 -8.22 -42.66 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -8.76 Total: -3.29 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 1.03 Total: 7.10 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: -0.88 Total: -46.39 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.58 Total: -23.08 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.45 -8.22 -42.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249037602.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.067 kcal (2) G-P(sol) polarization free energy of solvation -34.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds