Wall clock time and date at job start Fri Apr 10 2020 18:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 116.99935 * 2 1 4 4 O 1.20818 * 119.99934 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99833 * 180.02562 * 3 2 1 6 6 H 1.08993 * 109.52365 * 59.87119 * 5 3 2 7 7 C 1.53124 * 109.52186 * 299.68009 * 5 3 2 8 8 C 1.53035 * 109.27720 * 182.44365 * 7 5 3 9 9 N 1.46850 * 109.52254 * 59.17700 * 8 7 5 10 10 C 1.46904 * 110.99732 * 174.16065 * 9 8 7 11 11 H 1.09001 * 109.47335 * 316.54907 * 10 9 8 12 12 C 1.52999 * 109.47163 * 76.55331 * 10 9 8 13 13 C 1.50701 * 109.46912 * 196.55374 * 10 9 8 14 14 O 1.21279 * 120.00100 * 343.73542 * 13 10 9 15 15 N 1.34776 * 119.99777 * 163.74580 * 13 10 9 16 16 C 1.46498 * 120.00286 * 359.97438 * 15 13 10 17 17 C 1.46509 * 119.99598 * 179.97438 * 15 13 10 18 18 C 1.50703 * 109.46576 * 90.00269 * 17 15 13 19 19 H 1.07996 * 120.00428 * 359.97438 * 18 17 15 20 20 C 1.37877 * 119.99759 * 179.97438 * 18 17 15 21 21 N 1.31520 * 119.99940 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00169 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46763 * 89.99999 * 22 20 18 24 24 H 1.48494 * 109.47117 * 210.00144 * 22 20 18 25 25 H 1.48503 * 109.46913 * 330.00177 * 22 20 18 26 26 C 1.46845 * 111.20088 * 298.26006 * 9 8 7 27 27 C 1.53030 * 109.52582 * 61.73974 * 26 9 8 28 28 H 1.08991 * 109.50660 * 180.88046 * 27 26 9 29 29 C 1.53005 * 109.50137 * 60.79783 * 27 26 9 30 30 H 1.08997 * 109.47289 * 299.99565 * 1 2 3 31 31 H 1.08995 * 109.47143 * 60.00524 * 1 2 3 32 32 H 1.09004 * 109.46965 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.50109 * 302.38577 * 7 5 3 34 34 H 1.09002 * 109.50311 * 62.46480 * 7 5 3 35 35 H 1.09004 * 109.46227 * 299.16338 * 8 7 5 36 36 H 1.08992 * 109.46268 * 179.19674 * 8 7 5 37 37 H 1.08992 * 109.47243 * 59.99826 * 12 10 9 38 38 H 1.08999 * 109.47167 * 180.02562 * 12 10 9 39 39 H 1.09006 * 109.46644 * 299.99628 * 12 10 9 40 40 H 1.08996 * 109.47231 * 89.99922 * 16 15 13 41 41 H 1.09000 * 109.47221 * 210.00284 * 16 15 13 42 42 H 1.08996 * 109.46877 * 329.99889 * 16 15 13 43 43 H 1.08998 * 109.46684 * 209.99851 * 17 15 13 44 44 H 1.08996 * 109.47020 * 329.99911 * 17 15 13 45 45 H 0.97003 * 119.99817 * 180.02562 * 21 20 18 46 46 H 1.08996 * 109.46118 * 181.76154 * 26 9 8 47 47 H 1.09002 * 109.45985 * 301.73585 * 26 9 8 48 48 H 1.09008 * 109.46684 * 60.00658 * 29 27 26 49 49 H 1.09003 * 109.47135 * 179.97438 * 29 27 26 50 50 H 1.08990 * 109.47378 * 300.00428 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9567 0.7792 -0.8893 7 6 4.1152 0.5877 1.2529 8 6 5.6393 0.7242 1.2775 9 7 6.0047 2.1465 1.2774 10 6 7.4546 2.3175 1.4402 11 1 7.8158 1.6401 2.2140 12 6 8.1570 2.0022 0.1180 13 6 7.7509 3.7400 1.8396 14 8 6.9078 4.5993 1.6928 15 7 8.9531 4.0574 2.3599 16 6 9.9715 3.0194 2.5376 17 6 9.2413 5.4405 2.7477 18 6 8.8445 5.6518 4.1862 19 1 8.4198 4.8375 4.7544 20 6 9.0238 6.8847 4.7767 21 7 9.5405 7.8765 4.0846 22 14 8.5314 7.1469 6.5595 23 1 9.6834 6.8333 7.4424 24 1 8.1262 8.5617 6.7581 25 1 7.3931 6.2542 6.8950 26 6 5.5291 2.8168 0.0605 27 6 4.0018 2.7428 -0.0005 28 1 3.6501 3.2268 -0.9116 29 6 3.4070 3.4528 1.2174 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.6932 1.0590 2.1405 34 1 3.8440 -0.4679 1.2376 35 1 6.0615 0.2406 0.3966 36 1 6.0320 0.2484 2.1761 37 1 7.7959 2.6795 -0.6558 38 1 9.2329 2.1286 0.2389 39 1 7.9427 0.9732 -0.1709 40 1 10.5825 2.9520 1.6375 41 1 10.6042 3.2730 3.3881 42 1 9.4854 2.0609 2.7194 43 1 10.3075 5.6354 2.6325 44 1 8.6765 6.1215 2.1112 45 1 9.6670 8.7438 4.5002 46 1 5.8419 3.8608 0.0751 47 1 5.9517 2.3233 -0.8147 48 1 3.7201 4.4969 1.2181 49 1 2.3191 3.4002 1.1732 50 1 3.7579 2.9676 2.1281 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249056209.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:47 Heat of formation + Delta-G solvation = -106.615810 kcal Electronic energy + Delta-G solvation = -29754.693880 eV Core-core repulsion = 25782.646032 eV Total energy + Delta-G solvation = -3972.047848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.09537 -39.85006 -38.25185 -36.69431 -34.82114 -34.59677 -32.55925 -31.77851 -30.19153 -28.22080 -27.61465 -26.72359 -26.01531 -25.36297 -23.72841 -22.77616 -21.89758 -20.99441 -18.71976 -18.29436 -17.72501 -16.80096 -16.68768 -16.49643 -16.25245 -15.96212 -15.02372 -14.80577 -14.63888 -14.46036 -14.07123 -13.99051 -13.76198 -13.61364 -13.26377 -13.13182 -12.69866 -12.44041 -12.34529 -12.21158 -12.12378 -11.92585 -11.79862 -11.63299 -11.41149 -11.28015 -11.21834 -11.10606 -11.00655 -10.82263 -10.75361 -10.54646 -10.49991 -10.36290 -10.10280 -9.92807 -9.56705 -8.76535 -8.39621 -8.01435 -7.56865 -6.00362 -4.04543 2.05502 2.53017 3.33056 3.39633 3.41848 3.48493 3.74064 4.21531 4.40923 4.49516 4.56283 4.68721 4.84472 4.92074 4.98777 5.00944 5.11581 5.18525 5.19541 5.23686 5.26721 5.34120 5.38285 5.49669 5.54742 5.58175 5.67008 5.76082 5.79554 5.84254 5.92311 5.96025 6.03708 6.08097 6.15392 6.23637 6.26817 6.48915 6.56937 6.86043 7.00210 7.19563 7.25255 7.48843 7.60215 7.62754 7.96751 8.28064 8.48581 8.95979 9.19354 9.60633 11.07693 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.016683 B = 0.003093 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.949352 B = 9049.546745 C = 9961.725958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.464 3.536 4 O -0.495 6.495 5 C -0.076 4.076 6 H 0.102 0.898 7 C -0.107 4.107 8 C 0.057 3.943 9 N -0.512 5.512 10 C 0.063 3.937 11 H 0.099 0.901 12 C -0.180 4.180 13 C 0.514 3.486 14 O -0.523 6.523 15 N -0.604 5.604 16 C 0.083 3.917 17 C 0.247 3.753 18 C -0.523 4.523 19 H 0.057 0.943 20 C 0.060 3.940 21 N -0.896 5.896 22 Si 0.897 3.103 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.055 3.945 27 C -0.067 4.067 28 H 0.076 0.924 29 C -0.150 4.150 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.043 0.957 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.030 0.970 44 H 0.043 0.957 45 H 0.263 0.737 46 H 0.108 0.892 47 H 0.030 0.970 48 H 0.059 0.941 49 H 0.066 0.934 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.241 -20.205 -10.157 24.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.307 3.693 4 O -0.382 6.382 5 C -0.096 4.096 6 H 0.120 0.880 7 C -0.145 4.145 8 C -0.071 4.071 9 N -0.236 5.236 10 C -0.049 4.049 11 H 0.117 0.883 12 C -0.239 4.239 13 C 0.299 3.701 14 O -0.399 6.399 15 N -0.337 5.337 16 C -0.061 4.061 17 C 0.128 3.872 18 C -0.561 4.561 19 H 0.075 0.925 20 C -0.142 4.142 21 N -0.536 5.536 22 Si 0.725 3.275 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.198 1.198 26 C -0.072 4.072 27 C -0.086 4.086 28 H 0.094 0.906 29 C -0.207 4.207 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.048 0.952 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.126 0.874 47 H 0.048 0.952 48 H 0.078 0.922 49 H 0.085 0.915 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.103 -19.005 -9.807 23.652 hybrid contribution 0.078 -0.220 0.363 0.432 sum -10.025 -19.225 -9.444 23.649 Atomic orbital electron populations 1.23237 0.76669 1.03482 1.02536 1.86516 1.23190 1.33887 1.84262 1.23905 0.92102 0.81125 0.72128 1.90614 1.67175 1.35968 1.44450 1.21267 0.86545 1.00174 1.01566 0.87975 1.21610 0.95658 1.00344 0.96875 1.22093 0.94853 0.89083 1.01074 1.61722 1.11537 1.11444 1.38849 1.21690 0.88199 0.96958 0.98039 0.88311 1.22375 1.01894 1.01694 0.97933 1.20020 0.82279 0.89329 0.78466 1.90617 1.45033 1.50058 1.54159 1.48131 1.12783 1.11466 1.61287 1.21671 0.92293 0.91024 1.01123 1.19256 0.96438 0.75768 0.95724 1.21436 1.41467 0.96737 0.96504 0.92475 1.24933 0.95183 0.95751 0.98283 1.69937 1.44727 1.02329 1.36568 0.86508 0.78805 0.77482 0.84715 1.20729 1.21132 1.19838 1.22383 0.93380 1.02068 0.89379 1.21037 0.95129 0.91601 1.00813 0.90563 1.21991 1.00829 1.00893 0.97011 0.91893 0.92037 0.88279 0.89986 0.90382 0.94613 0.90203 0.91573 0.91214 0.92085 0.93865 0.90855 0.92565 0.95180 0.93899 0.92787 0.87403 0.95180 0.92219 0.91486 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.66 10.50 -39.26 -0.41 -4.07 16 3 C 0.46 5.47 6.96 36.01 0.25 5.72 16 4 O -0.50 -7.15 13.26 -18.74 -0.25 -7.40 16 5 C -0.08 -0.81 2.48 -91.65 -0.23 -1.04 16 6 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 7 C -0.11 -1.06 4.96 -26.65 -0.13 -1.20 16 8 C 0.06 0.59 5.22 -3.83 -0.02 0.57 16 9 N -0.51 -7.17 3.65 -228.08 -0.83 -8.00 16 10 C 0.06 0.91 1.93 -68.86 -0.13 0.78 16 11 H 0.10 1.28 6.22 -51.93 -0.32 0.96 16 12 C -0.18 -2.08 8.20 37.16 0.30 -1.78 16 13 C 0.51 10.41 6.84 -10.99 -0.08 10.34 16 14 O -0.52 -12.81 13.85 5.56 0.08 -12.73 16 15 N -0.60 -12.59 2.86 -182.95 -0.52 -13.12 16 16 C 0.08 1.28 9.36 59.85 0.56 1.84 16 17 C 0.25 6.47 5.16 -5.19 -0.03 6.44 16 18 C -0.52 -14.93 9.39 -34.44 -0.32 -15.25 16 19 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 22 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 26 C 0.06 0.77 3.60 -3.84 -0.01 0.76 16 27 C -0.07 -0.88 2.42 -90.54 -0.22 -1.10 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 C -0.15 -2.34 8.40 37.16 0.31 -2.03 16 30 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 31 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 32 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.95 6.58 -51.93 -0.34 0.61 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.04 0.32 7.13 -51.93 -0.37 -0.05 16 36 H 0.08 0.76 7.95 -51.93 -0.41 0.35 16 37 H 0.07 0.83 6.45 -51.93 -0.33 0.49 16 38 H 0.07 0.77 6.47 -51.93 -0.34 0.44 16 39 H 0.06 0.57 7.09 -51.93 -0.37 0.20 16 40 H 0.04 0.57 7.45 -51.93 -0.39 0.18 16 41 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 42 H 0.06 0.70 6.02 -51.93 -0.31 0.39 16 43 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 44 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.11 1.89 5.87 -51.93 -0.30 1.59 16 47 H 0.03 0.36 6.59 -51.93 -0.34 0.02 16 48 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16 49 H 0.07 1.05 5.33 -51.93 -0.28 0.78 16 50 H 0.06 1.05 6.01 -51.93 -0.31 0.74 16 LS Contribution 381.04 15.07 5.74 5.74 Total: -1.00 -34.41 381.04 -7.40 -41.81 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -8.15 Total: -0.28 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 1.23 Total: 7.02 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.62 Total: -47.26 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.58 Total: -24.20 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.41 -7.40 -41.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249056209.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.802 kcal (2) G-P(sol) polarization free energy of solvation -34.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds