Wall clock time and date at job start Fri Apr 10 2020 18:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 116.99935 * 2 1 4 4 O 1.20818 * 119.99934 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99833 * 180.02562 * 3 2 1 6 6 H 1.08993 * 109.52365 * 59.87119 * 5 3 2 7 7 C 1.53124 * 109.52186 * 299.68009 * 5 3 2 8 8 C 1.53035 * 109.27720 * 182.44365 * 7 5 3 9 9 N 1.46850 * 109.52254 * 59.17700 * 8 7 5 10 10 C 1.46904 * 110.99732 * 174.16065 * 9 8 7 11 11 H 1.09001 * 109.47335 * 316.54907 * 10 9 8 12 12 C 1.52999 * 109.47163 * 76.55331 * 10 9 8 13 13 C 1.50701 * 109.46912 * 196.55374 * 10 9 8 14 14 O 1.21279 * 120.00100 * 343.73542 * 13 10 9 15 15 N 1.34776 * 119.99777 * 163.74580 * 13 10 9 16 16 C 1.46498 * 120.00286 * 359.97438 * 15 13 10 17 17 C 1.46509 * 119.99598 * 179.97438 * 15 13 10 18 18 C 1.50703 * 109.46576 * 90.00269 * 17 15 13 19 19 H 1.07996 * 120.00428 * 359.97438 * 18 17 15 20 20 C 1.37877 * 119.99759 * 179.97438 * 18 17 15 21 21 N 1.31520 * 119.99940 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00169 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46763 * 89.99999 * 22 20 18 24 24 H 1.48494 * 109.47117 * 210.00144 * 22 20 18 25 25 H 1.48503 * 109.46913 * 330.00177 * 22 20 18 26 26 C 1.46845 * 111.20088 * 298.26006 * 9 8 7 27 27 C 1.53030 * 109.52582 * 61.73974 * 26 9 8 28 28 H 1.08991 * 109.50660 * 180.88046 * 27 26 9 29 29 C 1.53005 * 109.50137 * 60.79783 * 27 26 9 30 30 H 1.08997 * 109.47289 * 299.99565 * 1 2 3 31 31 H 1.08995 * 109.47143 * 60.00524 * 1 2 3 32 32 H 1.09004 * 109.46965 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.50109 * 302.38577 * 7 5 3 34 34 H 1.09002 * 109.50311 * 62.46480 * 7 5 3 35 35 H 1.09004 * 109.46227 * 299.16338 * 8 7 5 36 36 H 1.08992 * 109.46268 * 179.19674 * 8 7 5 37 37 H 1.08992 * 109.47243 * 59.99826 * 12 10 9 38 38 H 1.08999 * 109.47167 * 180.02562 * 12 10 9 39 39 H 1.09006 * 109.46644 * 299.99628 * 12 10 9 40 40 H 1.08996 * 109.47231 * 89.99922 * 16 15 13 41 41 H 1.09000 * 109.47221 * 210.00284 * 16 15 13 42 42 H 1.08996 * 109.46877 * 329.99889 * 16 15 13 43 43 H 1.08998 * 109.46684 * 209.99851 * 17 15 13 44 44 H 1.08996 * 109.47020 * 329.99911 * 17 15 13 45 45 H 0.97003 * 119.99817 * 180.02562 * 21 20 18 46 46 H 1.08996 * 109.46118 * 181.76154 * 26 9 8 47 47 H 1.09002 * 109.45985 * 301.73585 * 26 9 8 48 48 H 1.09008 * 109.46684 * 60.00658 * 29 27 26 49 49 H 1.09003 * 109.47135 * 179.97438 * 29 27 26 50 50 H 1.08990 * 109.47378 * 300.00428 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9567 0.7792 -0.8893 7 6 4.1152 0.5877 1.2529 8 6 5.6393 0.7242 1.2775 9 7 6.0047 2.1465 1.2774 10 6 7.4546 2.3175 1.4402 11 1 7.8158 1.6401 2.2140 12 6 8.1570 2.0022 0.1180 13 6 7.7509 3.7400 1.8396 14 8 6.9078 4.5993 1.6928 15 7 8.9531 4.0574 2.3599 16 6 9.9715 3.0194 2.5376 17 6 9.2413 5.4405 2.7477 18 6 8.8445 5.6518 4.1862 19 1 8.4198 4.8375 4.7544 20 6 9.0238 6.8847 4.7767 21 7 9.5405 7.8765 4.0846 22 14 8.5314 7.1469 6.5595 23 1 9.6834 6.8333 7.4424 24 1 8.1262 8.5617 6.7581 25 1 7.3931 6.2542 6.8950 26 6 5.5291 2.8168 0.0605 27 6 4.0018 2.7428 -0.0005 28 1 3.6501 3.2268 -0.9116 29 6 3.4070 3.4528 1.2174 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.6932 1.0590 2.1405 34 1 3.8440 -0.4679 1.2376 35 1 6.0615 0.2406 0.3966 36 1 6.0320 0.2484 2.1761 37 1 7.7959 2.6795 -0.6558 38 1 9.2329 2.1286 0.2389 39 1 7.9427 0.9732 -0.1709 40 1 10.5825 2.9520 1.6375 41 1 10.6042 3.2730 3.3881 42 1 9.4854 2.0609 2.7194 43 1 10.3075 5.6354 2.6325 44 1 8.6765 6.1215 2.1112 45 1 9.6670 8.7438 4.5002 46 1 5.8419 3.8608 0.0751 47 1 5.9517 2.3233 -0.8147 48 1 3.7201 4.4969 1.2181 49 1 2.3191 3.4002 1.1732 50 1 3.7579 2.9676 2.1281 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249056209.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:46 Heat of formation + Delta-G solvation = -130.017986 kcal Electronic energy + Delta-G solvation = -29755.708675 eV Core-core repulsion = 25782.646032 eV Total energy + Delta-G solvation = -3973.062643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.03687 -41.07828 -39.49987 -37.60990 -36.49447 -35.78626 -34.64912 -32.73801 -31.33644 -29.58048 -28.85246 -27.78101 -27.36993 -26.52027 -25.36049 -23.80997 -23.22403 -21.99236 -19.89438 -19.56427 -18.68317 -18.59616 -17.82428 -17.73106 -17.37853 -17.20363 -16.63086 -16.22835 -15.82995 -15.57211 -15.47740 -15.06925 -14.74957 -14.66131 -14.40997 -14.35844 -14.07941 -13.75678 -13.48624 -13.33074 -13.24350 -13.14975 -13.04733 -12.96255 -12.78587 -12.69922 -12.56369 -12.47825 -12.40075 -12.19973 -12.10629 -11.86592 -11.69213 -11.66417 -11.49183 -11.36957 -10.97001 -10.63349 -10.26728 -9.34483 -9.02097 -8.21333 -6.35741 1.16592 1.34957 1.38708 1.48889 1.75673 1.95859 2.32162 2.43379 3.05470 3.07871 3.50277 3.70693 3.76423 3.83051 4.09207 4.11936 4.19396 4.23704 4.28008 4.33213 4.33833 4.45633 4.52858 4.59935 4.65972 4.68584 4.72460 4.73955 4.82564 4.89980 4.92435 4.96205 4.98960 5.05117 5.05528 5.16015 5.17477 5.25995 5.27368 5.28964 5.47019 5.59493 5.60231 5.89133 6.09056 6.09754 6.31234 6.73194 6.75680 6.90673 7.31168 7.63484 8.85276 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.016683 B = 0.003093 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.949352 B = 9049.546745 C = 9961.725958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.466 3.534 4 O -0.532 6.532 5 C -0.070 4.070 6 H 0.135 0.865 7 C -0.102 4.102 8 C 0.058 3.942 9 N -0.539 5.539 10 C 0.078 3.922 11 H 0.124 0.876 12 C -0.172 4.172 13 C 0.500 3.500 14 O -0.580 6.580 15 N -0.613 5.613 16 C 0.078 3.922 17 C 0.263 3.737 18 C -0.537 4.537 19 H 0.051 0.949 20 C 0.006 3.994 21 N -0.930 5.930 22 Si 0.966 3.034 23 H -0.261 1.261 24 H -0.282 1.282 25 H -0.275 1.275 26 C 0.064 3.936 27 C -0.064 4.064 28 H 0.072 0.928 29 C -0.139 4.139 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.133 0.867 33 H 0.058 0.942 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.094 0.906 43 H 0.021 0.979 44 H -0.006 1.006 45 H 0.266 0.734 46 H 0.061 0.939 47 H 0.057 0.943 48 H 0.022 0.978 49 H 0.063 0.937 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.965 -24.540 -10.199 28.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.311 3.689 4 O -0.421 6.421 5 C -0.088 4.088 6 H 0.153 0.847 7 C -0.140 4.140 8 C -0.069 4.069 9 N -0.264 5.264 10 C -0.034 4.034 11 H 0.141 0.859 12 C -0.231 4.231 13 C 0.288 3.712 14 O -0.459 6.459 15 N -0.345 5.345 16 C -0.064 4.064 17 C 0.141 3.859 18 C -0.576 4.576 19 H 0.069 0.931 20 C -0.193 4.193 21 N -0.570 5.570 22 Si 0.790 3.210 23 H -0.186 1.186 24 H -0.208 1.208 25 H -0.200 1.200 26 C -0.063 4.063 27 C -0.083 4.083 28 H 0.091 0.909 29 C -0.196 4.196 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.151 0.849 33 H 0.077 0.923 34 H 0.126 0.874 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.112 0.888 43 H 0.039 0.961 44 H 0.012 0.988 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.075 0.925 48 H 0.042 0.958 49 H 0.082 0.918 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.798 -23.414 -9.854 27.227 hybrid contribution -0.070 1.133 0.346 1.187 sum -9.868 -22.281 -9.508 26.157 Atomic orbital electron populations 1.23515 0.75209 1.05630 1.02210 1.86498 1.24592 1.32634 1.83681 1.24119 0.92550 0.81114 0.71120 1.90608 1.67991 1.37241 1.46262 1.21232 0.85988 0.98096 1.03528 0.84741 1.21616 0.95462 1.01670 0.95248 1.22223 0.94954 0.86562 1.03154 1.61584 1.11354 1.14240 1.39204 1.21591 0.89190 0.92347 1.00262 0.85856 1.22345 1.01838 1.03447 0.95468 1.21295 0.81059 0.91766 0.77074 1.90603 1.46721 1.52438 1.56144 1.48163 1.14640 1.10460 1.61275 1.21968 0.91501 0.90756 1.02153 1.18671 0.94725 0.78651 0.93868 1.21700 1.41468 0.96872 0.97568 0.93099 1.25852 0.95018 0.95444 1.02946 1.70055 1.45597 1.02819 1.38525 0.85442 0.78850 0.77278 0.79407 1.18577 1.20758 1.19984 1.22140 0.93623 0.99875 0.90683 1.20942 0.94722 0.93631 0.99036 0.90927 1.21853 1.00605 0.98928 0.98216 0.92554 0.92152 0.84879 0.92276 0.87354 0.91603 0.88757 0.93104 0.90462 0.88262 0.91070 0.91881 0.88797 0.96053 0.98786 0.92491 0.92103 0.92475 0.95834 0.91828 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.55 16 2 O -0.36 -6.32 10.50 -51.43 -0.54 -6.86 16 3 C 0.47 10.30 6.96 71.24 0.50 10.79 16 4 O -0.53 -15.41 13.26 21.99 0.29 -15.12 16 5 C -0.07 -1.31 2.48 -11.46 -0.03 -1.34 16 6 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 7 C -0.10 -1.70 4.96 30.65 0.15 -1.55 16 8 C 0.06 0.95 5.22 86.32 0.45 1.40 16 9 N -0.54 -14.21 3.65 -875.52 -3.19 -17.40 16 10 C 0.08 2.07 1.93 44.17 0.09 2.16 16 11 H 0.12 2.68 6.22 -2.39 -0.01 2.66 16 12 C -0.17 -3.36 8.20 71.98 0.59 -2.77 16 13 C 0.50 20.68 6.84 87.66 0.60 21.28 16 14 O -0.58 -30.39 13.85 -3.03 -0.04 -30.43 16 15 N -0.61 -25.98 2.86 -851.13 -2.43 -28.41 16 16 C 0.08 2.26 9.36 127.77 1.20 3.45 16 17 C 0.26 14.45 5.16 85.63 0.44 14.90 16 18 C -0.54 -31.76 9.39 25.60 0.24 -31.52 16 19 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 20 C 0.01 0.35 5.46 84.65 0.46 0.82 16 21 N -0.93 -57.61 13.29 21.45 0.28 -57.32 16 22 Si 0.97 46.24 29.54 68.60 2.03 48.27 16 23 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 24 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 25 H -0.27 -13.11 7.11 99.48 0.71 -12.41 16 26 C 0.06 1.77 3.60 86.32 0.31 2.09 16 27 C -0.06 -1.70 2.42 -10.74 -0.03 -1.72 16 28 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16 29 C -0.14 -4.63 8.40 71.98 0.60 -4.03 16 30 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 31 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 32 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 1.27 6.58 -2.39 -0.02 1.26 16 34 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 0.74 7.13 -2.38 -0.02 0.73 16 36 H 0.09 1.33 7.95 -2.39 -0.02 1.31 16 37 H 0.05 1.17 6.45 -2.39 -0.02 1.15 16 38 H 0.08 1.41 6.47 -2.39 -0.02 1.39 16 39 H 0.10 1.24 7.09 -2.38 -0.02 1.22 16 40 H 0.07 1.66 7.45 -2.39 -0.02 1.65 16 41 H 0.06 1.95 8.07 -2.39 -0.02 1.93 16 42 H 0.09 1.98 6.02 -2.39 -0.01 1.97 16 43 H 0.02 1.19 8.07 -2.39 -0.02 1.17 16 44 H -0.01 -0.38 7.42 -2.39 -0.02 -0.40 16 45 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 46 H 0.06 2.29 5.87 -2.39 -0.01 2.27 16 47 H 0.06 1.24 6.59 -2.39 -0.02 1.22 16 48 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 49 H 0.06 2.14 5.33 -2.39 -0.01 2.12 16 50 H 0.05 1.88 6.01 -2.39 -0.01 1.87 16 Total: -1.00 -82.48 381.04 4.10 -78.38 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.93 Total: 13.39 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 6.77 Total: 15.51 kcal Atomic # 7 Polarization: -97.80 SS G_CDS: -5.34 Total: -103.14 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: -0.29 Total: -52.41 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -82.48 4.10 -78.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249056209.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.640 kcal (2) G-P(sol) polarization free energy of solvation -82.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds