Wall clock time and date at job start Fri Apr 10 2020 18:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34228 * 117.00385 * 2 1 4 4 O 1.20830 * 119.99928 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00271 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.57021 * 60.16115 * 5 3 2 7 7 C 1.53115 * 109.52179 * 300.00328 * 5 3 2 8 8 C 1.53038 * 109.27518 * 182.44185 * 7 5 3 9 9 N 1.46843 * 109.52403 * 59.17781 * 8 7 5 10 10 C 1.46903 * 110.99816 * 174.15984 * 9 8 7 11 11 H 1.08996 * 109.47337 * 293.18062 * 10 9 8 12 12 C 1.53003 * 109.47369 * 173.18263 * 10 9 8 13 13 C 1.50706 * 109.47069 * 53.18534 * 10 9 8 14 14 O 1.21273 * 120.00325 * 27.20134 * 13 10 9 15 15 N 1.34777 * 119.99701 * 207.20329 * 13 10 9 16 16 C 1.46500 * 120.00177 * 354.65705 * 15 13 10 17 17 C 1.46503 * 119.99851 * 174.65356 * 15 13 10 18 18 C 1.50705 * 109.46762 * 89.99987 * 17 15 13 19 19 H 1.07998 * 119.99933 * 0.02562 * 18 17 15 20 20 C 1.37875 * 119.99843 * 179.97438 * 18 17 15 21 21 N 1.31515 * 119.99849 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00102 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47103 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46983 * 119.99954 * 22 20 18 25 25 H 1.48491 * 109.47126 * 240.00237 * 22 20 18 26 26 C 1.46846 * 111.19888 * 298.25226 * 9 8 7 27 27 C 1.53039 * 109.52132 * 61.74650 * 26 9 8 28 28 H 1.08994 * 109.50828 * 180.88082 * 27 26 9 29 29 C 1.53003 * 109.53690 * 60.77991 * 27 26 9 30 30 H 1.08996 * 109.47299 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47067 * 300.00625 * 1 2 3 32 32 H 1.09005 * 109.46806 * 59.99963 * 1 2 3 33 33 H 1.08988 * 109.50610 * 62.49655 * 7 5 3 34 34 H 1.09007 * 109.53114 * 302.39908 * 7 5 3 35 35 H 1.08993 * 109.46166 * 299.15761 * 8 7 5 36 36 H 1.09005 * 109.45030 * 179.18756 * 8 7 5 37 37 H 1.09007 * 109.46872 * 54.03461 * 12 10 9 38 38 H 1.09000 * 109.47045 * 294.03618 * 12 10 9 39 39 H 1.08991 * 109.47616 * 174.03417 * 12 10 9 40 40 H 1.08996 * 109.47295 * 94.62423 * 16 15 13 41 41 H 1.08998 * 109.47027 * 214.62782 * 16 15 13 42 42 H 1.09006 * 109.47060 * 334.62367 * 16 15 13 43 43 H 1.08995 * 109.46920 * 209.99918 * 17 15 13 44 44 H 1.08996 * 109.46872 * 330.00106 * 17 15 13 45 45 H 0.97006 * 120.00228 * 179.97438 * 21 20 18 46 46 H 1.08999 * 109.46163 * 181.75713 * 26 9 8 47 47 H 1.08996 * 109.46809 * 301.73386 * 26 9 8 48 48 H 1.09000 * 109.47097 * 300.17815 * 29 27 26 49 49 H 1.08994 * 109.47048 * 60.17665 * 29 27 26 50 50 H 1.09000 * 109.47233 * 180.18061 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9581 0.7834 -0.8900 7 6 4.1146 0.5812 1.2507 8 6 5.6387 0.7175 1.2767 9 7 6.0042 2.1397 1.2841 10 6 7.4540 2.3098 1.4485 11 1 7.7490 1.9733 2.4424 12 6 7.8165 3.7869 1.2818 13 6 8.1767 1.4946 0.4071 14 8 7.6381 1.2479 -0.6511 15 7 9.4216 1.0398 0.6519 16 6 10.1175 1.4344 1.8791 17 6 10.0788 0.1507 -0.3094 18 6 10.8482 0.9739 -1.3102 19 1 10.8479 2.0514 -1.2372 20 6 11.5531 0.3513 -2.3183 21 7 11.5538 -0.9608 -2.4068 22 14 12.5074 1.3715 -3.5585 23 1 12.3471 2.8134 -3.2413 24 1 13.9460 1.0084 -3.4958 25 1 11.9883 1.1039 -4.9237 26 6 5.5292 2.8163 0.0705 27 6 4.0019 2.7427 0.0084 28 1 3.6506 3.2313 -0.9004 29 6 3.4057 3.4459 1.2295 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 3.8439 -0.4744 1.2295 34 1 3.6923 1.0473 2.1409 35 1 6.0613 0.2384 0.3936 36 1 6.0308 0.2370 2.1732 37 1 7.2148 4.3878 1.9637 38 1 7.6195 4.0956 0.2551 39 1 8.8731 3.9295 1.5077 40 1 9.9636 0.6739 2.6447 41 1 11.1837 1.5348 1.6759 42 1 9.7231 2.3881 2.2299 43 1 10.7637 -0.5126 0.2187 44 1 9.3263 -0.4426 -0.8287 45 1 12.0495 -1.3989 -3.1163 46 1 5.8420 3.8602 0.0907 47 1 5.9523 2.3275 -0.8071 48 1 3.7584 2.9577 2.1380 49 1 3.7161 4.4907 1.2346 50 1 2.3180 3.3901 1.1859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249056212.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:48 Heat of formation + Delta-G solvation = -130.496195 kcal Electronic energy + Delta-G solvation = -29950.553612 eV Core-core repulsion = 25977.470232 eV Total energy + Delta-G solvation = -3973.083379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.13405 -41.29002 -39.33878 -37.59944 -36.56655 -35.67424 -34.66856 -32.94353 -31.47659 -29.71253 -28.85465 -27.79787 -27.37945 -26.45684 -25.33055 -23.61548 -23.08071 -22.13489 -20.18457 -19.64504 -18.68306 -18.63189 -18.01924 -17.83375 -17.53651 -17.10950 -16.65533 -16.16859 -15.88429 -15.75209 -15.37435 -15.27646 -14.77371 -14.60880 -14.49110 -14.32446 -14.01732 -13.71740 -13.57967 -13.42764 -13.24521 -13.11422 -13.03900 -12.90646 -12.81020 -12.66749 -12.49648 -12.29072 -12.25323 -12.19580 -12.15678 -11.96178 -11.73190 -11.67422 -11.58181 -11.26200 -10.96752 -10.91602 -10.66492 -9.39420 -9.07168 -8.23629 -6.37993 1.11101 1.34115 1.36352 1.47955 1.72991 1.81869 2.31847 2.48042 2.86599 3.05769 3.48103 3.65732 3.70760 3.84027 4.02694 4.15029 4.23311 4.24614 4.29917 4.32708 4.36370 4.41493 4.47183 4.59242 4.69600 4.71750 4.74100 4.75179 4.80071 4.88304 4.88985 4.93859 4.98637 5.02904 5.06935 5.14529 5.17561 5.22153 5.28005 5.35242 5.43350 5.56681 5.65281 5.84478 5.95863 6.05066 6.06084 6.69695 6.71010 6.82275 7.28178 7.50798 8.83185 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.016823 B = 0.003130 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.998623 B = 8942.205265 C = 9510.914969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.474 3.526 4 O -0.521 6.521 5 C -0.080 4.080 6 H 0.095 0.905 7 C -0.091 4.091 8 C 0.043 3.957 9 N -0.491 5.491 10 C 0.070 3.930 11 H 0.129 0.871 12 C -0.139 4.139 13 C 0.472 3.528 14 O -0.585 6.585 15 N -0.610 5.610 16 C 0.074 3.926 17 C 0.262 3.738 18 C -0.536 4.536 19 H 0.051 0.949 20 C 0.007 3.993 21 N -0.929 5.929 22 Si 0.965 3.035 23 H -0.267 1.267 24 H -0.269 1.269 25 H -0.283 1.283 26 C 0.044 3.956 27 C -0.064 4.064 28 H 0.070 0.930 29 C -0.142 4.142 30 H 0.129 0.871 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.024 0.976 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.097 0.903 43 H 0.020 0.980 44 H -0.006 1.006 45 H 0.266 0.734 46 H 0.089 0.911 47 H 0.038 0.962 48 H 0.068 0.932 49 H 0.057 0.943 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.657 6.013 13.025 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.318 3.682 4 O -0.410 6.410 5 C -0.099 4.099 6 H 0.113 0.887 7 C -0.129 4.129 8 C -0.085 4.085 9 N -0.214 5.214 10 C -0.042 4.042 11 H 0.146 0.854 12 C -0.196 4.196 13 C 0.259 3.741 14 O -0.466 6.466 15 N -0.341 5.341 16 C -0.068 4.068 17 C 0.140 3.860 18 C -0.575 4.575 19 H 0.069 0.931 20 C -0.192 4.192 21 N -0.569 5.569 22 Si 0.790 3.210 23 H -0.192 1.192 24 H -0.194 1.194 25 H -0.209 1.209 26 C -0.084 4.084 27 C -0.083 4.083 28 H 0.088 0.912 29 C -0.199 4.199 30 H 0.147 0.853 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.042 0.958 36 H 0.108 0.892 37 H 0.120 0.880 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.116 0.884 43 H 0.038 0.962 44 H 0.012 0.988 45 H 0.075 0.925 46 H 0.107 0.893 47 H 0.056 0.944 48 H 0.087 0.913 49 H 0.076 0.924 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.318 6.235 12.810 22.425 hybrid contribution 1.011 -0.462 -2.074 2.353 sum -16.307 5.773 10.737 20.360 Atomic orbital electron populations 1.23545 0.74813 1.05606 1.02585 1.86527 1.25027 1.32979 1.83613 1.23814 0.91947 0.81192 0.71251 1.90570 1.67644 1.36618 1.46158 1.21209 0.86637 0.99731 1.02326 0.88681 1.21496 0.94132 1.01145 0.96119 1.22226 0.95963 0.88924 1.01414 1.62634 1.09462 1.12437 1.36915 1.22068 0.87384 0.96994 0.97769 0.85362 1.21874 1.03044 0.92089 1.02629 1.22601 0.81778 0.80590 0.89097 1.90585 1.67451 1.60151 1.28463 1.48338 1.15507 1.47861 1.22407 1.22003 0.98101 1.01566 0.85164 1.18683 0.90989 0.88989 0.87359 1.21696 1.29756 0.93228 1.12805 0.93110 1.25841 0.97700 0.96130 0.99546 1.70054 1.43188 1.09488 1.34156 0.85401 0.78451 0.78875 0.78290 1.19161 1.19398 1.20898 1.22374 0.93932 0.99980 0.92081 1.20973 0.94256 0.92445 1.00599 0.91194 1.21938 1.00974 1.00022 0.96917 0.85330 0.91531 0.92146 0.89412 0.89208 0.95805 0.89170 0.87963 0.93708 0.90522 0.91158 0.91808 0.88418 0.96186 0.98765 0.92477 0.89300 0.94389 0.91309 0.92414 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.60 16 2 O -0.37 -7.93 10.49 -51.40 -0.54 -8.47 16 3 C 0.47 11.64 6.96 71.24 0.50 12.13 16 4 O -0.52 -14.43 13.27 21.95 0.29 -14.14 16 5 C -0.08 -1.98 2.48 -11.46 -0.03 -2.01 16 6 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 7 C -0.09 -2.02 4.95 30.65 0.15 -1.87 16 8 C 0.04 1.14 4.88 86.33 0.42 1.57 16 9 N -0.49 -12.74 4.02 -875.51 -3.52 -16.26 16 10 C 0.07 1.87 2.11 44.17 0.09 1.96 16 11 H 0.13 2.72 6.96 -2.39 -0.02 2.70 16 12 C -0.14 -3.14 8.14 71.98 0.59 -2.55 16 13 C 0.47 18.52 5.87 87.66 0.51 19.03 16 14 O -0.59 -28.62 12.03 -3.01 -0.04 -28.66 16 15 N -0.61 -25.05 2.86 -851.13 -2.43 -27.48 16 16 C 0.07 2.10 9.89 127.77 1.26 3.37 16 17 C 0.26 14.01 5.14 85.63 0.44 14.45 16 18 C -0.54 -30.90 9.39 25.60 0.24 -30.66 16 19 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 20 C 0.01 0.38 5.46 84.65 0.46 0.84 16 21 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16 22 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 26 C 0.04 1.25 4.06 86.33 0.35 1.60 16 27 C -0.06 -1.61 2.42 -10.74 -0.03 -1.63 16 28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 29 C -0.14 -3.16 8.40 71.98 0.60 -2.56 16 30 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 0.93 8.13 -2.39 -0.02 0.91 16 32 H 0.06 0.91 8.13 -2.38 -0.02 0.89 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.76 16 34 H 0.09 1.77 6.59 -2.38 -0.02 1.76 16 35 H 0.02 0.85 6.03 -2.39 -0.01 0.83 16 36 H 0.09 2.12 8.12 -2.38 -0.02 2.10 16 37 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.04 1.20 6.58 -2.39 -0.02 1.19 16 39 H 0.08 1.59 6.67 -2.39 -0.02 1.57 16 40 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.06 1.95 8.11 -2.39 -0.02 1.93 16 42 H 0.10 2.06 5.00 -2.38 -0.01 2.05 16 43 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 44 H -0.01 -0.36 7.50 -2.39 -0.02 -0.38 16 45 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 46 H 0.09 2.33 5.95 -2.39 -0.01 2.31 16 47 H 0.04 1.41 5.70 -2.39 -0.01 1.40 16 48 H 0.07 1.47 6.02 -2.39 -0.01 1.45 16 49 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.06 1.55 5.33 -2.39 -0.01 1.54 16 Total: -1.00 -75.08 379.54 3.78 -71.30 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.93 Total: 17.30 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: 6.77 Total: 15.27 kcal Atomic # 7 Polarization: -94.13 SS G_CDS: -5.66 Total: -99.79 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: -0.28 Total: -51.27 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -75.08 3.78 -71.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249056212.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.198 kcal (2) G-P(sol) polarization free energy of solvation -75.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds