Wall clock time and date at job start Fri Apr 10 2020 18:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47240 * 2 1 4 4 C 1.46500 * 119.99821 * 270.00239 * 3 2 1 5 5 C 1.50706 * 109.47171 * 270.00009 * 4 3 2 6 6 H 1.07998 * 119.99442 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00171 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99995 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99829 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47256 * 59.99751 * 9 7 5 11 11 H 1.48497 * 109.47084 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46921 * 299.99738 * 9 7 5 13 13 C 1.34776 * 120.00279 * 90.00184 * 3 2 1 14 14 O 1.21281 * 119.99917 * 180.02562 * 13 3 2 15 15 C 1.50695 * 119.99664 * 359.97438 * 13 3 2 16 16 N 1.46907 * 109.47035 * 180.02562 * 15 13 3 17 17 C 1.46842 * 110.99676 * 293.95450 * 16 15 13 18 18 C 1.53036 * 109.52190 * 185.84074 * 17 16 15 19 19 C 1.53123 * 109.27788 * 300.81892 * 18 17 16 20 20 H 1.09007 * 109.52268 * 297.75177 * 19 18 17 21 21 C 1.50697 * 109.52570 * 177.56259 * 19 18 17 22 22 O 1.20831 * 120.00005 * 240.00735 * 21 19 18 23 23 O 1.34223 * 120.00167 * 59.99601 * 21 19 18 24 24 C 1.45204 * 117.00018 * 180.02562 * 23 21 19 25 25 C 1.53123 * 109.16001 * 57.65365 * 19 18 17 26 26 H 1.08997 * 109.49749 * 62.28489 * 25 19 18 27 27 C 1.52999 * 109.50074 * 182.40572 * 25 19 18 28 28 C 1.46848 * 110.99958 * 58.16512 * 16 15 13 29 29 H 1.08998 * 109.47321 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46642 * 300.00279 * 1 2 3 31 31 H 1.09000 * 109.47108 * 59.99774 * 1 2 3 32 32 H 1.09002 * 109.46642 * 239.99721 * 2 1 3 33 33 H 1.09000 * 109.47108 * 120.00226 * 2 1 3 34 34 H 1.08999 * 109.47551 * 29.99880 * 4 3 2 35 35 H 1.08999 * 109.47439 * 150.00133 * 4 3 2 36 36 H 0.96996 * 119.99659 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.47344 * 60.00190 * 15 13 3 38 38 H 1.09004 * 109.47269 * 299.99671 * 15 13 3 39 39 H 1.09002 * 109.46766 * 65.82407 * 17 16 15 40 40 H 1.09000 * 109.46420 * 305.85141 * 17 16 15 41 41 H 1.09000 * 109.50632 * 60.76184 * 18 17 16 42 42 H 1.09006 * 109.50216 * 180.87978 * 18 17 16 43 43 H 1.09002 * 109.47065 * 299.99630 * 24 23 21 44 44 H 1.08997 * 109.47105 * 60.00146 * 24 23 21 45 45 H 1.09007 * 109.47216 * 180.02562 * 24 23 21 46 46 H 1.08997 * 109.46673 * 179.80689 * 27 25 19 47 47 H 1.08997 * 109.47309 * 299.80194 * 27 25 19 48 48 H 1.08994 * 109.47350 * 59.80786 * 27 25 19 49 49 H 1.09003 * 109.46014 * 294.17985 * 28 16 15 50 50 H 1.08995 * 109.46374 * 54.14015 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7039 6 1 4.3428 1.2308 -1.0959 7 6 4.1494 2.3904 -2.8776 8 7 3.3494 3.1264 -3.6177 9 14 5.9138 2.0973 -3.4165 10 1 6.1417 0.6407 -3.5943 11 1 6.1613 2.7972 -4.7026 12 1 6.8409 2.6206 -2.3812 13 6 2.2431 2.0166 1.1672 14 8 2.6469 3.1602 1.1671 15 6 1.9914 1.3063 2.4722 16 7 2.3092 2.2066 3.5888 17 6 3.7453 2.5101 3.6276 18 6 4.0615 3.3278 4.8819 19 6 3.2472 4.6244 4.8588 20 1 3.5361 5.2206 3.9931 21 6 3.5090 5.4061 6.1202 22 8 2.5974 5.6677 6.8690 23 8 4.7547 5.8117 6.4122 24 6 4.9328 6.5597 7.6439 25 6 1.7577 4.2808 4.7694 26 1 1.4605 3.7178 5.6542 27 6 0.9400 5.5712 4.6854 28 6 1.5083 3.4354 3.5184 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0956 3.1410 -1.1385 36 1 3.6755 3.5169 -4.4436 37 1 2.6212 0.4186 2.5302 38 1 0.9432 1.0127 2.5298 39 1 4.0195 3.0832 2.7418 40 1 4.3128 1.5797 3.6480 41 1 3.8005 2.7499 5.7685 42 1 5.1250 3.5663 4.9023 43 1 4.3302 7.4673 7.6082 44 1 4.6184 5.9477 8.4893 45 1 5.9836 6.8260 7.7586 46 1 -0.1199 5.3259 4.6183 47 1 1.1180 6.1729 5.5766 48 1 1.2393 6.1341 3.8013 49 1 1.7929 4.0041 2.6331 50 1 0.4511 3.1770 3.4594 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249157942.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:53 Heat of formation + Delta-G solvation = -119.356372 kcal Electronic energy + Delta-G solvation = -29601.052436 eV Core-core repulsion = 25628.452116 eV Total energy + Delta-G solvation = -3972.600320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.94387 -39.82619 -38.03236 -36.57715 -35.35490 -33.93360 -32.79643 -32.07114 -30.12886 -28.86568 -27.90208 -26.58067 -26.41746 -24.02578 -23.05595 -22.37993 -21.81389 -21.05150 -19.65913 -18.38930 -17.65934 -16.85664 -16.66776 -16.46995 -16.25818 -15.83190 -15.19824 -14.77519 -14.64975 -14.19934 -14.15530 -14.02972 -13.85957 -13.45688 -13.27264 -12.90447 -12.84996 -12.45253 -12.27703 -12.22599 -11.99858 -11.97236 -11.82984 -11.60263 -11.39631 -11.21748 -11.18146 -10.95899 -10.89307 -10.75251 -10.68238 -10.58813 -10.55072 -10.30377 -10.16362 -10.00313 -9.68592 -9.59192 -8.46404 -7.78355 -7.65032 -6.07379 -4.12403 2.12578 2.61984 3.28774 3.30513 3.33908 3.38047 3.91718 4.05234 4.41825 4.49981 4.71896 4.74938 4.90612 4.97787 5.05771 5.12175 5.20360 5.27225 5.31050 5.33756 5.41242 5.47255 5.57121 5.59286 5.60973 5.68268 5.75946 5.79298 5.85179 5.90439 5.97875 6.02007 6.07245 6.13554 6.21210 6.24834 6.35396 6.44529 6.45867 6.56253 6.98371 7.14189 7.21274 7.41145 7.51667 7.67594 7.88625 8.20347 8.38456 8.85933 9.03597 9.52845 11.00614 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.013404 B = 0.003337 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.500697 B = 8388.729853 C = 9572.748550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.594 5.594 4 C 0.246 3.754 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.474 3.526 14 O -0.541 6.541 15 C 0.033 3.967 16 N -0.517 5.517 17 C 0.041 3.959 18 C -0.101 4.101 19 C -0.077 4.077 20 H 0.111 0.889 21 C 0.469 3.531 22 O -0.505 6.505 23 O -0.358 6.358 24 C 0.035 3.965 25 C -0.064 4.064 26 H 0.080 0.920 27 C -0.157 4.157 28 C 0.037 3.963 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.030 0.970 35 H 0.042 0.958 36 H 0.264 0.736 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.099 0.901 46 H 0.056 0.944 47 H 0.072 0.928 48 H 0.053 0.947 49 H 0.085 0.915 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.113 -1.174 18.253 18.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.326 5.326 4 C 0.126 3.874 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.260 3.740 14 O -0.420 6.420 15 C -0.099 4.099 16 N -0.240 5.240 17 C -0.087 4.087 18 C -0.139 4.139 19 C -0.096 4.096 20 H 0.129 0.871 21 C 0.312 3.688 22 O -0.393 6.393 23 O -0.275 6.275 24 C -0.059 4.059 25 C -0.083 4.083 26 H 0.099 0.901 27 C -0.214 4.214 28 C -0.090 4.090 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.118 0.882 46 H 0.075 0.925 47 H 0.091 0.909 48 H 0.072 0.928 49 H 0.103 0.897 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.285 -0.611 18.751 18.899 hybrid contribution 1.122 0.267 -1.049 1.560 sum -1.163 -0.344 17.701 17.743 Atomic orbital electron populations 1.22213 0.96730 1.01479 1.02284 1.21427 0.93550 0.84200 1.02717 1.48422 1.62944 1.13206 1.08029 1.19245 0.96191 0.93577 0.78346 1.21374 0.96884 1.31956 1.06284 0.92620 1.24931 0.97812 0.94912 0.96396 1.69921 1.35728 1.33358 1.14354 0.86574 0.84818 0.78265 0.77854 1.20248 1.21173 1.20198 1.21625 0.78635 0.87473 0.86224 1.90547 1.46445 1.18162 1.86830 1.22326 1.03333 0.96791 0.87424 1.62450 1.05995 1.15663 1.39857 1.22250 0.88568 0.99954 0.97912 1.21535 0.99362 0.93586 0.99418 1.21277 0.98498 0.96710 0.93132 0.87141 1.23970 0.80233 0.76802 0.87790 1.90601 1.44627 1.53845 1.50233 1.86547 1.32060 1.66607 1.42284 1.23238 1.02898 0.95519 0.84265 1.20982 0.91243 0.96724 0.99393 0.90132 1.21983 0.99783 0.97092 1.02565 1.22509 0.97322 0.90911 0.98288 0.92106 0.93042 0.92115 0.89994 0.91624 0.95205 0.94035 0.92662 0.88403 0.88402 0.91021 0.90828 0.91086 0.90307 0.92035 0.92023 0.88245 0.92480 0.90892 0.92836 0.89687 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.24 37.16 0.38 -1.77 16 2 C 0.11 1.59 5.93 -4.04 -0.02 1.57 16 3 N -0.59 -11.88 2.46 -175.06 -0.43 -12.31 16 4 C 0.25 6.24 5.16 -5.19 -0.03 6.21 16 5 C -0.53 -14.58 9.39 -34.44 -0.32 -14.90 16 6 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 9 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.47 9.08 7.09 -10.99 -0.08 9.00 16 14 O -0.54 -12.27 11.20 5.56 0.06 -12.20 16 15 C 0.03 0.47 4.41 -4.97 -0.02 0.44 16 16 N -0.52 -7.30 4.86 -236.12 -1.15 -8.45 16 17 C 0.04 0.58 5.09 -3.84 -0.02 0.56 16 18 C -0.10 -1.23 5.31 -26.65 -0.14 -1.37 16 19 C -0.08 -0.99 2.20 -91.65 -0.20 -1.19 16 20 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 21 C 0.47 6.07 6.98 36.00 0.25 6.32 16 22 O -0.51 -7.35 13.57 -18.75 -0.25 -7.61 16 23 O -0.36 -4.20 10.49 -39.24 -0.41 -4.61 16 24 C 0.03 0.29 10.56 101.05 1.07 1.36 16 25 C -0.06 -0.85 2.02 -90.54 -0.18 -1.03 16 26 H 0.08 1.09 8.05 -51.93 -0.42 0.67 16 27 C -0.16 -1.98 8.91 37.16 0.33 -1.65 16 28 C 0.04 0.54 4.26 -3.84 -0.02 0.52 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.62 7.22 -51.93 -0.37 0.24 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.31 8.07 -51.93 -0.42 0.90 16 33 H 0.07 0.81 6.44 -51.93 -0.33 0.48 16 34 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 35 H 0.04 1.20 7.42 -51.93 -0.39 0.81 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 37 H 0.10 1.24 7.32 -51.93 -0.38 0.86 16 38 H 0.10 1.21 7.18 -51.93 -0.37 0.84 16 39 H 0.07 1.26 6.00 -51.93 -0.31 0.95 16 40 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 44 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 45 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.07 0.97 5.74 -51.93 -0.30 0.67 16 48 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.09 1.50 5.36 -51.93 -0.28 1.23 16 50 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 LS Contribution 390.31 15.07 5.88 5.88 Total: -1.00 -32.43 390.31 -8.29 -40.72 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -8.60 Total: 1.88 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 0.90 Total: 5.72 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -0.84 Total: -46.33 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.60 Total: -24.43 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.43 -8.29 -40.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249157942.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.635 kcal (2) G-P(sol) polarization free energy of solvation -32.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds